Wall clock time and date at job start Sat Apr 11 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48501 * 109.47142 * 269.99737 * 3 2 1 5 5 H 1.48502 * 109.47252 * 29.99946 * 3 2 1 6 6 H 1.48503 * 109.47308 * 149.99823 * 3 2 1 7 7 C 1.40050 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99687 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00368 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00010 * 180.02562 * 9 7 2 12 12 C 1.46498 * 120.00297 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47496 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47221 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46867 * 180.02562 * 14 13 12 16 16 S 1.65597 * 119.99791 * 165.00419 * 15 14 13 17 17 O 1.42102 * 106.40060 * 178.54054 * 16 15 14 18 18 O 1.42101 * 106.40207 * 311.45359 * 16 15 14 19 19 C 1.76196 * 107.22133 * 64.99502 * 16 15 14 20 20 C 1.38237 * 120.00794 * 115.00028 * 19 16 15 21 21 C 1.38219 * 120.01679 * 179.97438 * 20 19 16 22 22 C 1.38260 * 120.02355 * 0.03929 * 21 20 19 23 23 C 1.38192 * 120.01292 * 359.97438 * 22 21 20 24 24 C 1.38328 * 120.00974 * 294.72704 * 19 16 15 25 25 Cl 1.73604 * 120.00982 * 359.97438 * 24 19 16 26 26 H 0.97006 * 120.00002 * 359.97438 * 1 2 3 27 27 H 0.97006 * 119.99987 * 0.02562 * 11 9 7 28 28 H 1.09002 * 109.46897 * 59.99628 * 12 11 9 29 29 H 1.09008 * 109.47169 * 299.99879 * 12 11 9 30 30 H 1.09002 * 109.47313 * 59.99930 * 13 12 11 31 31 H 1.08995 * 109.47095 * 300.00129 * 13 12 11 32 32 H 1.08998 * 109.47232 * 60.00247 * 14 13 12 33 33 H 1.09002 * 109.46985 * 299.99790 * 14 13 12 34 34 H 0.96995 * 120.00050 * 344.72503 * 15 14 13 35 35 H 1.08006 * 119.98832 * 0.02562 * 20 19 16 36 36 H 1.08000 * 119.98213 * 180.02562 * 21 20 19 37 37 H 1.08002 * 119.99018 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00296 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0026 11 7 1.9489 -3.6477 0.0027 12 6 1.2165 -4.9164 0.0044 13 6 2.2106 -6.0793 0.0047 14 6 1.4456 -7.4043 0.0071 15 7 2.3977 -8.5179 0.0080 16 16 1.8830 -10.0469 0.3816 17 8 3.0186 -10.8928 0.2620 18 8 1.1209 -9.9332 1.5756 19 6 0.7585 -10.5419 -0.8812 20 6 1.0764 -11.5977 -1.7150 21 6 0.1941 -11.9865 -2.7054 22 6 -1.0065 -11.3193 -2.8633 23 6 -1.3253 -10.2636 -2.0306 24 6 -0.4452 -9.8779 -1.0350 25 17 -0.8486 -8.5569 0.0168 26 1 -0.4850 0.8401 0.0004 27 1 2.9190 -3.6477 0.0031 28 1 0.5894 -4.9751 -0.8852 29 1 0.5901 -4.9732 0.8948 30 1 2.8380 -6.0208 0.8941 31 1 2.8366 -6.0224 -0.8858 32 1 0.8180 -7.4632 -0.8821 33 1 0.8200 -7.4610 0.8979 34 1 3.3286 -8.3602 -0.2142 35 1 2.0140 -12.1194 -1.5920 36 1 0.4428 -12.8117 -3.3563 37 1 -1.6953 -11.6233 -3.6376 38 1 -2.2634 -9.7427 -2.1538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343765073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:05 Heat of formation + Delta-G solvation = -83.935251 kcal Electronic energy + Delta-G solvation = -25101.823695 eV Core-core repulsion = 21097.583858 eV Total energy + Delta-G solvation = -4004.239837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75521 -37.78604 -37.44005 -36.97686 -36.16195 -36.06467 -33.52801 -32.33799 -31.90481 -31.31106 -30.12750 -26.54604 -24.45173 -23.90322 -23.35101 -21.72782 -19.86398 -19.65122 -18.71414 -17.75185 -17.02498 -16.72603 -16.62327 -16.02997 -15.62198 -15.29834 -15.10183 -14.86617 -14.42548 -14.27799 -14.09027 -13.89655 -13.40658 -13.09715 -12.94442 -12.44321 -12.34249 -12.30356 -12.11513 -12.05894 -11.96205 -11.74259 -11.29171 -11.19581 -11.07760 -11.02962 -10.64084 -10.54092 -10.42871 -10.21758 -9.99821 -9.68490 -9.26416 -8.85183 -7.62074 -7.51370 -6.18562 -4.64013 -0.00875 0.25941 0.60794 1.49769 2.62462 2.93226 3.14097 3.20960 3.24417 3.39695 3.93398 4.10405 4.28693 4.37959 4.59265 4.59649 4.64145 4.78534 4.91021 4.97397 5.02638 5.19246 5.28508 5.37441 5.52284 5.59728 5.67845 5.72301 5.77162 5.87134 6.02966 6.12789 6.52656 6.53704 6.72001 7.43431 7.92740 8.08933 8.32656 9.02586 9.53306 10.60196 10.78689 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.002349 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.821103 B =11915.237776 C =12564.730608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.768 5.768 12 C 0.134 3.866 13 C -0.138 4.138 14 C 0.110 3.890 15 N -1.109 6.109 16 S 2.695 3.305 17 O -0.959 6.959 18 O -0.939 6.939 19 C -0.673 4.673 20 C -0.011 4.011 21 C -0.138 4.138 22 C -0.054 4.054 23 C -0.128 4.128 24 C 0.045 3.955 25 Cl -0.026 7.026 26 H 0.268 0.732 27 H 0.380 0.620 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.420 0.580 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -24.733 -6.085 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.424 5.424 12 C 0.008 3.992 13 C -0.177 4.177 14 C -0.016 4.016 15 N -0.870 5.870 16 S 2.781 3.219 17 O -0.949 6.949 18 O -0.928 6.928 19 C -0.758 4.758 20 C -0.030 4.030 21 C -0.157 4.157 22 C -0.072 4.072 23 C -0.148 4.148 24 C 0.017 3.983 25 Cl 0.004 6.996 26 H 0.079 0.921 27 H 0.212 0.788 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.256 0.744 35 H 0.170 0.830 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.717 -25.035 -5.224 25.584 hybrid contribution 0.784 1.025 -0.808 1.523 sum 1.501 -24.010 -6.033 24.802 Atomic orbital electron populations 1.70023 1.07062 1.27247 1.35381 1.25714 0.94622 1.00307 0.92637 0.86372 0.80146 0.81413 0.78789 1.19774 1.20470 1.18927 1.20884 0.93569 0.89405 1.54409 0.91435 1.18225 0.87219 0.82446 0.76341 1.90599 1.14101 1.86864 1.54824 1.46116 1.08549 1.04836 1.82919 1.20752 0.93831 0.83627 1.00979 1.22027 0.99277 0.93145 1.03256 1.22090 0.91021 0.85734 1.02765 1.55399 1.19375 1.23988 1.88276 1.02003 0.73448 0.72405 0.74011 1.93585 1.49164 1.65301 1.86879 1.93654 1.72156 1.85555 1.41481 1.30992 1.12666 1.09172 1.22985 1.21008 0.99263 0.91881 0.90884 1.21426 0.94452 1.00931 0.98841 1.21503 0.96183 0.92831 0.96728 1.21291 1.00115 0.98439 0.94915 1.20675 0.93886 0.90617 0.93102 1.98505 1.93814 1.43478 1.63826 0.92117 0.78837 0.93157 0.93167 0.90652 0.90841 0.90856 0.89586 0.74408 0.83023 0.84285 0.84153 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.10 11.83 55.55 0.66 -22.44 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.09 29.56 -169.99 -5.02 15.06 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.55 -15.37 9.54 -35.63 -0.34 -15.71 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.55 15.73 7.75 -12.99 -0.10 15.63 16 10 O -0.58 -18.86 15.02 5.20 0.08 -18.78 16 11 N -0.77 -16.83 5.55 -61.72 -0.34 -17.17 16 12 C 0.13 2.46 5.67 -4.04 -0.02 2.44 16 13 C -0.14 -1.76 5.47 -26.73 -0.15 -1.91 16 14 C 0.11 1.28 4.12 -4.04 -0.02 1.26 16 15 N -1.11 -10.94 6.00 -10.61 -0.06 -11.00 16 16 S 2.69 30.15 5.44 -107.50 -0.58 29.56 16 17 O -0.96 -11.94 16.97 -57.17 -0.97 -12.91 16 18 O -0.94 -13.26 15.95 -57.17 -0.91 -14.17 16 19 C -0.67 -6.75 5.89 -39.55 -0.23 -6.99 16 20 C -0.01 -0.09 9.55 -39.59 -0.38 -0.47 16 21 C -0.14 -0.86 10.05 -39.58 -0.40 -1.26 16 22 C -0.05 -0.33 10.05 -39.59 -0.40 -0.73 16 23 C -0.13 -1.04 9.83 -39.55 -0.39 -1.42 16 24 C 0.05 0.47 6.09 -39.50 -0.24 0.22 16 25 Cl -0.03 -0.30 20.65 -51.86 -1.07 -1.38 16 26 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 27 H 0.38 7.18 8.45 -40.82 -0.35 6.84 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.81 6.17 -51.93 -0.32 0.49 16 33 H 0.09 1.09 5.90 -51.93 -0.31 0.78 16 34 H 0.42 3.21 8.66 -34.47 -0.30 2.91 16 35 H 0.15 1.02 7.33 -52.48 -0.38 0.63 16 36 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -38.56 347.18 -9.92 -48.48 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.16 Total: 6.11 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.76 Total: -6.59 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.25 Total: -50.61 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.80 Total: -45.86 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 30.15 SS G_CDS: -0.58 Total: 29.56 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.07 Total: -1.38 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.56 -9.92 -48.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343765073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.459 kcal (2) G-P(sol) polarization free energy of solvation -38.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds