Wall clock time and date at job start Sat Apr 11 2020 07:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47044 * 2 1 4 4 C 1.46501 * 120.00222 * 269.99905 * 3 2 1 5 5 C 1.50701 * 109.47058 * 270.00205 * 4 3 2 6 6 H 1.07991 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99481 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00048 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99626 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47494 * 90.00159 * 9 7 5 11 11 H 1.48502 * 109.46806 * 210.00180 * 9 7 5 12 12 H 1.48499 * 109.47216 * 329.99880 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00341 * 3 2 1 14 14 O 1.21279 * 119.99689 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00342 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47406 * 180.02562 * 15 13 3 17 17 C 1.34893 * 117.00188 * 179.97438 * 16 15 13 18 18 O 1.21619 * 120.00030 * 0.28088 * 17 16 15 19 19 C 1.46406 * 119.99835 * 179.97438 * 17 16 15 20 20 S 1.76201 * 126.16802 * 359.69412 * 19 17 16 21 21 C 1.70926 * 90.38268 * 179.97438 * 20 19 17 22 22 Cl 1.73598 * 124.71265 * 180.02562 * 21 20 19 23 23 N 1.29546 * 110.56894 * 0.35049 * 21 20 19 24 24 C 1.30907 * 117.43369 * 359.72477 * 23 21 20 25 25 C 1.50703 * 123.02746 * 180.02562 * 24 23 21 26 26 H 1.08996 * 109.47114 * 299.99686 * 1 2 3 27 27 H 1.09002 * 109.47270 * 60.00003 * 1 2 3 28 28 H 1.08997 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46847 * 240.00264 * 2 1 3 30 30 H 1.09002 * 109.47270 * 119.99997 * 2 1 3 31 31 H 1.09003 * 109.46735 * 29.99933 * 4 3 2 32 32 H 1.08997 * 109.47210 * 150.00247 * 4 3 2 33 33 H 0.97000 * 119.99686 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47654 * 59.99954 * 15 13 3 35 35 H 1.09003 * 109.47273 * 300.00345 * 15 13 3 36 36 H 1.09002 * 109.46902 * 269.95448 * 25 24 23 37 37 H 1.08998 * 109.47458 * 29.95613 * 25 24 23 38 38 H 1.09004 * 109.47086 * 149.95858 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3487 3.1251 -3.6185 9 14 5.9130 2.0957 -3.4176 10 1 5.9759 0.8746 -4.2603 11 1 6.3921 3.2628 -4.2008 12 1 6.7734 1.9159 -2.2207 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1960 3.5759 17 6 2.1326 1.7102 4.8224 18 8 1.7351 0.5719 4.9818 19 6 2.4299 2.5510 5.9835 20 16 3.0255 4.2088 5.9417 21 6 3.0363 4.2602 7.6501 22 17 3.5242 5.6324 8.5948 23 7 2.6362 3.1304 8.1420 24 6 2.3022 2.1888 7.2961 25 6 1.8199 0.8285 7.7297 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1383 33 1 3.6747 3.5156 -4.4444 34 1 2.6211 0.4186 2.5303 35 1 0.9432 1.0125 2.5299 36 1 2.6721 0.1569 7.8333 37 1 1.3056 0.9134 8.6870 38 1 1.1331 0.4313 6.9822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754572275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:40 Heat of formation + Delta-G solvation = -74.154663 kcal Electronic energy + Delta-G solvation = -24995.865104 eV Core-core repulsion = 20992.049385 eV Total energy + Delta-G solvation = -4003.815719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.97026 -40.06170 -38.95742 -37.49105 -36.53279 -35.37895 -32.88939 -32.23685 -30.26327 -29.86847 -28.54406 -26.54467 -25.37568 -23.34604 -23.09366 -22.28684 -20.05149 -19.16805 -18.72385 -17.46445 -17.16571 -16.87949 -16.46964 -16.13046 -15.81160 -15.67029 -15.18253 -14.55088 -14.30304 -14.18302 -13.60068 -13.49460 -13.29897 -13.04144 -12.92393 -12.71663 -12.22013 -12.10826 -12.09446 -12.02276 -11.78697 -11.68733 -11.28372 -11.01019 -10.95182 -10.82518 -10.70159 -10.58577 -10.32754 -10.18815 -10.04977 -9.70841 -9.21880 -9.08825 -8.48638 -7.82020 -6.09788 -4.14821 -0.46981 0.17665 1.02144 1.29167 1.74848 2.19608 2.48574 3.16446 3.27271 3.34400 3.38877 3.75434 3.84949 4.36167 4.40485 4.64763 4.76428 5.03976 5.10685 5.15480 5.25046 5.29415 5.32354 5.42030 5.52829 5.67407 5.80845 5.94171 6.12376 6.14525 6.39667 6.90608 6.93155 7.33935 7.36671 7.44307 7.85969 8.15607 8.22434 8.77766 8.93212 9.50396 10.98395 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.002547 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.582735 B =10989.406052 C =12334.928973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.052 3.948 16 O -0.325 6.325 17 C 0.548 3.452 18 O -0.490 6.490 19 C -0.298 4.298 20 S 0.318 5.682 21 C 0.066 3.934 22 Cl 0.039 6.961 23 N -0.469 5.469 24 C 0.173 3.827 25 C -0.092 4.092 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 -2.577 21.648 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.025 4.025 16 O -0.240 6.240 17 C 0.391 3.609 18 O -0.380 6.380 19 C -0.421 4.421 20 S 0.573 5.427 21 C -0.232 4.232 22 Cl 0.066 6.934 23 N -0.187 5.187 24 C 0.033 3.967 25 C -0.151 4.151 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.135 -1.269 21.332 21.766 hybrid contribution 0.723 -0.923 0.027 1.173 sum -3.412 -2.192 21.360 21.741 Atomic orbital electron populations 1.22234 0.96465 1.01757 1.02440 1.21527 0.93801 0.83887 1.03107 1.48216 1.63694 1.13432 1.07081 1.19347 0.96527 0.93717 0.77474 1.21415 0.96833 1.32154 1.06400 0.92384 1.24931 0.97936 0.94822 0.96340 1.69927 1.35728 1.33296 1.14301 0.86484 0.84540 0.77710 0.78619 1.20621 1.21044 1.19858 1.19650 0.79864 0.87171 0.84222 1.90722 1.44493 1.17464 1.86692 1.23070 1.03056 0.92537 0.83880 1.86635 1.78702 1.44898 1.13757 1.19145 0.74766 0.84681 0.82297 1.90855 1.42820 1.18026 1.86265 1.24889 1.20434 1.00445 0.96302 1.84772 1.54259 1.06079 0.97552 1.27680 1.04286 0.94647 0.96593 1.98459 1.88405 1.34607 1.71884 1.65794 1.15234 0.99401 1.38307 1.20798 0.94141 0.96455 0.85354 1.20748 1.02660 0.88283 1.03372 0.93135 0.91748 0.91835 0.89335 0.91712 0.94572 0.93663 0.92634 0.88231 0.88327 0.89334 0.89996 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.15 0.38 -1.75 16 2 C 0.10 1.50 5.93 -4.04 -0.02 1.48 16 3 N -0.59 -11.90 2.46 -175.06 -0.43 -12.33 16 4 C 0.25 6.23 5.16 -5.19 -0.03 6.21 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.51 10.26 7.75 -10.99 -0.09 10.17 16 14 O -0.52 -12.84 16.08 -14.10 -0.23 -13.07 16 15 C 0.05 0.79 4.51 36.00 0.16 0.95 16 16 O -0.33 -5.17 9.65 -47.71 -0.46 -5.63 16 17 C 0.55 7.60 7.92 34.02 0.27 7.87 16 18 O -0.49 -6.87 14.12 -19.36 -0.27 -7.14 16 19 C -0.30 -3.64 6.51 -36.83 -0.24 -3.88 16 20 S 0.32 3.43 23.08 -107.50 -2.48 0.95 16 21 C 0.07 0.69 8.02 51.80 0.42 1.11 16 22 Cl 0.04 0.33 29.33 -51.86 -1.52 -1.19 16 23 N -0.47 -5.39 10.50 -8.40 -0.09 -5.48 16 24 C 0.17 1.95 6.83 -83.52 -0.57 1.38 16 25 C -0.09 -0.83 9.71 36.01 0.35 -0.48 16 26 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.10 1.34 7.39 -51.93 -0.38 0.96 16 35 H 0.10 1.27 7.18 -51.93 -0.37 0.90 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.99 6.06 -51.93 -0.31 0.67 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -32.88 363.34 -8.32 -41.20 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -4.24 Total: -3.75 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 0.21 Total: 9.78 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.22 Total: -43.07 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.96 Total: -25.84 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.48 Total: 0.95 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.52 Total: -1.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.88 -8.32 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754572275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.950 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds