Wall clock time and date at job start Sat Apr 11 2020 07:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47044 * 2 1 4 4 C 1.46501 * 120.00222 * 269.99905 * 3 2 1 5 5 C 1.50701 * 109.47058 * 270.00205 * 4 3 2 6 6 H 1.07991 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99481 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00048 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99626 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47494 * 90.00159 * 9 7 5 11 11 H 1.48502 * 109.46806 * 210.00180 * 9 7 5 12 12 H 1.48499 * 109.47216 * 329.99880 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00341 * 3 2 1 14 14 O 1.21279 * 119.99689 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00342 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47406 * 180.02562 * 15 13 3 17 17 C 1.34893 * 117.00188 * 179.97438 * 16 15 13 18 18 O 1.21619 * 120.00030 * 0.28088 * 17 16 15 19 19 C 1.46406 * 119.99835 * 179.97438 * 17 16 15 20 20 S 1.76201 * 126.16802 * 359.69412 * 19 17 16 21 21 C 1.70926 * 90.38268 * 179.97438 * 20 19 17 22 22 Cl 1.73598 * 124.71265 * 180.02562 * 21 20 19 23 23 N 1.29546 * 110.56894 * 0.35049 * 21 20 19 24 24 C 1.30907 * 117.43369 * 359.72477 * 23 21 20 25 25 C 1.50703 * 123.02746 * 180.02562 * 24 23 21 26 26 H 1.08996 * 109.47114 * 299.99686 * 1 2 3 27 27 H 1.09002 * 109.47270 * 60.00003 * 1 2 3 28 28 H 1.08997 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46847 * 240.00264 * 2 1 3 30 30 H 1.09002 * 109.47270 * 119.99997 * 2 1 3 31 31 H 1.09003 * 109.46735 * 29.99933 * 4 3 2 32 32 H 1.08997 * 109.47210 * 150.00247 * 4 3 2 33 33 H 0.97000 * 119.99686 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47654 * 59.99954 * 15 13 3 35 35 H 1.09003 * 109.47273 * 300.00345 * 15 13 3 36 36 H 1.09002 * 109.46902 * 269.95448 * 25 24 23 37 37 H 1.08998 * 109.47458 * 29.95613 * 25 24 23 38 38 H 1.09004 * 109.47086 * 149.95858 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3487 3.1251 -3.6185 9 14 5.9130 2.0957 -3.4176 10 1 5.9759 0.8746 -4.2603 11 1 6.3921 3.2628 -4.2008 12 1 6.7734 1.9159 -2.2207 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1673 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1960 3.5759 17 6 2.1326 1.7102 4.8224 18 8 1.7351 0.5719 4.9818 19 6 2.4299 2.5510 5.9835 20 16 3.0255 4.2088 5.9417 21 6 3.0363 4.2602 7.6501 22 17 3.5242 5.6324 8.5948 23 7 2.6362 3.1304 8.1420 24 6 2.3022 2.1888 7.2961 25 6 1.8199 0.8285 7.7297 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1383 33 1 3.6747 3.5156 -4.4444 34 1 2.6211 0.4186 2.5303 35 1 0.9432 1.0125 2.5299 36 1 2.6721 0.1569 7.8333 37 1 1.3056 0.9134 8.6870 38 1 1.1331 0.4313 6.9822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754572275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:39 Heat of formation + Delta-G solvation = -93.965322 kcal Electronic energy + Delta-G solvation = -24996.724158 eV Core-core repulsion = 20992.049385 eV Total energy + Delta-G solvation = -4004.674773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.99996 -41.12938 -40.40642 -38.27700 -37.68444 -36.97693 -34.93210 -33.08319 -31.76128 -31.00818 -29.73415 -28.24081 -26.20364 -25.01859 -24.30855 -23.61455 -21.04073 -20.27405 -20.00113 -18.69986 -18.47202 -18.26846 -17.95125 -17.45179 -17.21894 -16.63505 -16.54394 -16.09545 -15.81906 -14.97816 -14.88999 -14.73279 -14.55114 -14.10759 -13.96744 -13.87707 -13.68998 -13.57016 -13.27323 -13.07284 -12.87124 -12.76995 -12.67931 -12.58964 -12.49921 -12.23554 -12.08167 -11.81576 -11.81315 -11.71700 -11.19020 -10.93090 -10.74198 -10.63631 -10.05431 -9.54055 -8.22762 -6.36994 -1.34817 -0.65968 0.16736 0.47131 0.82467 1.06422 1.37793 1.40583 1.50463 1.52487 1.62274 2.29055 2.43254 3.02526 3.07632 3.39449 3.44633 3.65696 3.92153 3.96595 4.16864 4.35719 4.39793 4.60976 4.67271 4.72171 4.85843 4.96338 4.97672 5.04797 5.20735 5.25785 5.38415 5.54787 5.79912 6.04684 6.05445 6.31245 6.61642 6.72460 7.21294 7.36990 8.84645 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.002547 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.582735 B =10989.406052 C =12334.928973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.064 3.936 16 O -0.346 6.346 17 C 0.552 3.448 18 O -0.492 6.492 19 C -0.321 4.321 20 S 0.319 5.681 21 C 0.074 3.926 22 Cl 0.057 6.943 23 N -0.483 5.483 24 C 0.181 3.819 25 C -0.091 4.091 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.029 0.971 32 H 0.000 1.000 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 -4.407 23.278 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.013 4.013 16 O -0.262 6.262 17 C 0.396 3.604 18 O -0.382 6.382 19 C -0.444 4.444 20 S 0.574 5.426 21 C -0.224 4.224 22 Cl 0.085 6.915 23 N -0.201 5.201 24 C 0.040 3.960 25 C -0.149 4.149 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.887 -3.153 22.977 23.516 hybrid contribution 0.609 -0.306 -0.396 0.789 sum -3.278 -3.459 22.581 23.078 Atomic orbital electron populations 1.22180 0.94316 1.03809 1.01869 1.21888 0.95556 0.80905 1.04532 1.48203 1.63541 1.15296 1.05622 1.18791 0.95549 0.91708 0.79763 1.21701 0.97839 1.32127 1.06584 0.92691 1.25830 1.02289 0.94446 0.96437 1.70044 1.37741 1.34142 1.14775 0.85430 0.79096 0.78159 0.78219 1.18850 1.20744 1.19759 1.20505 0.78441 0.86676 0.85797 1.90687 1.47075 1.20134 1.87722 1.22951 1.05328 0.91850 0.81131 1.86623 1.79284 1.45659 1.14600 1.19225 0.74514 0.84848 0.81801 1.90843 1.43147 1.18087 1.86165 1.24843 1.22385 1.01043 0.96142 1.84800 1.54285 1.05681 0.97818 1.27867 1.02991 0.94830 0.96710 1.98469 1.88064 1.33606 1.71364 1.65898 1.16050 0.99748 1.38383 1.21164 0.92827 0.97101 0.84942 1.20830 1.03020 0.87157 1.03908 0.92250 0.93829 0.88382 0.90069 0.88117 0.95261 0.98166 0.92379 0.85739 0.85314 0.88211 0.88450 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.24 71.98 0.74 -2.99 16 2 C 0.09 2.62 5.93 86.38 0.51 3.13 16 3 N -0.59 -24.12 2.46 -826.16 -2.03 -26.15 16 4 C 0.26 13.77 5.16 85.63 0.44 14.21 16 5 C -0.54 -30.66 9.39 25.60 0.24 -30.41 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 9 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.50 20.34 7.75 87.65 0.68 21.02 16 14 O -0.58 -29.75 16.08 15.77 0.25 -29.50 16 15 C 0.06 1.83 4.51 71.23 0.32 2.15 16 16 O -0.35 -10.72 9.65 -51.68 -0.50 -11.22 16 17 C 0.55 14.57 7.92 69.95 0.55 15.12 16 18 O -0.49 -12.73 14.12 19.45 0.27 -12.45 16 19 C -0.32 -7.55 6.51 24.05 0.16 -7.39 16 20 S 0.32 6.72 23.08 -56.49 -1.30 5.42 16 21 C 0.07 1.46 8.02 130.58 1.05 2.51 16 22 Cl 0.06 0.91 29.33 -2.72 -0.08 0.83 16 23 N -0.48 -10.34 10.50 -180.48 -1.89 -12.24 16 24 C 0.18 3.79 6.83 42.35 0.29 4.08 16 25 C -0.09 -1.44 9.71 71.24 0.69 -0.75 16 26 H 0.06 1.25 7.22 -2.39 -0.02 1.23 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 2.41 8.07 -2.38 -0.02 2.40 16 30 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 31 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.12 2.97 7.39 -2.39 -0.02 2.95 16 35 H 0.13 2.92 7.18 -2.39 -0.02 2.91 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 1.68 6.06 -2.39 -0.01 1.67 16 Total: -1.00 -73.57 363.34 4.28 -69.29 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.11 Total: 3.08 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.13 Total: 21.66 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -3.64 Total: -93.35 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: 0.03 Total: -53.17 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.30 Total: 5.42 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -0.08 Total: 0.83 kcal Total: -73.57 4.28 -69.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754572275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.676 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds