Wall clock time and date at job start Sat Apr 11 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30905 * 123.02869 * 2 1 4 4 C 1.29553 * 117.43398 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 124.71281 * 180.02562 * 4 3 2 6 6 S 1.70918 * 110.57018 * 359.76013 * 4 3 2 7 7 C 1.36756 * 123.02621 * 180.02562 * 2 1 3 8 8 C 1.46406 * 126.16869 * 359.93709 * 7 2 1 9 9 O 1.21628 * 119.99971 * 359.97438 * 8 7 2 10 10 O 1.34892 * 120.00351 * 179.97438 * 8 7 2 11 11 C 1.45193 * 117.00416 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47051 * 29.99804 * 11 10 8 13 13 C 1.53003 * 109.47164 * 270.00009 * 11 10 8 14 14 C 1.50696 * 109.47419 * 150.00027 * 11 10 8 15 15 O 1.21273 * 120.00086 * 16.02481 * 14 11 10 16 16 N 1.34784 * 119.99829 * 196.02784 * 14 11 10 17 17 C 1.46498 * 119.99986 * 5.36422 * 16 14 11 18 18 C 1.46505 * 119.99787 * 185.36135 * 16 14 11 19 19 C 1.50698 * 109.46727 * 90.00141 * 18 16 14 20 20 H 1.07993 * 120.00154 * 359.97438 * 19 18 16 21 21 C 1.37872 * 119.99512 * 179.97438 * 19 18 16 22 22 N 1.31516 * 120.00181 * 179.97438 * 21 19 18 23 23 Si 1.86809 * 120.00244 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46876 * 90.00038 * 23 21 19 25 25 H 1.48506 * 109.46995 * 209.99932 * 23 21 19 26 26 H 1.48491 * 109.46755 * 329.99886 * 23 21 19 27 27 H 1.09001 * 109.47329 * 269.96406 * 1 2 3 28 28 H 1.09001 * 109.46867 * 29.96780 * 1 2 3 29 29 H 1.09002 * 109.47019 * 149.96394 * 1 2 3 30 30 H 1.08998 * 109.47092 * 306.13398 * 13 11 10 31 31 H 1.09000 * 109.47285 * 186.13249 * 13 11 10 32 32 H 1.09003 * 109.46841 * 66.13385 * 13 11 10 33 33 H 1.09003 * 109.47021 * 84.82085 * 17 16 14 34 34 H 1.09000 * 109.46647 * 204.81852 * 17 16 14 35 35 H 1.08993 * 109.47435 * 324.82332 * 17 16 14 36 36 H 1.09002 * 109.46813 * 210.00586 * 18 16 14 37 37 H 1.08998 * 109.46595 * 330.00027 * 18 16 14 38 38 H 0.96995 * 120.00550 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2205 1.0975 0.0000 4 6 3.5099 0.9712 -0.0005 5 17 4.6328 2.2950 0.0000 6 16 3.9515 -0.6799 0.0056 7 6 2.2524 -1.1466 -0.0005 8 6 1.7323 -2.5152 0.0002 9 8 0.5317 -2.7095 0.0018 10 8 2.5847 -3.5607 -0.0010 11 6 1.9987 -4.8891 0.0004 12 1 1.0369 -4.8624 -0.5118 13 6 1.7953 -5.3553 1.4434 14 6 2.9205 -5.8455 -0.7113 15 8 4.0749 -5.5358 -0.9163 16 7 2.4618 -7.0452 -1.1199 17 6 1.0410 -7.3732 -0.9785 18 6 3.3841 -8.0213 -1.7057 19 6 3.9527 -8.8922 -0.6152 20 1 3.6570 -8.7343 0.4114 21 6 4.8504 -9.8907 -0.9282 22 7 5.3471 -10.6506 0.0234 23 14 5.3625 -10.1635 -2.7040 24 1 6.5575 -9.3357 -3.0072 25 1 5.6882 -11.5976 -2.9105 26 1 4.2487 -9.7740 -3.6056 27 1 -0.3634 -0.0006 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8897 -0.5144 30 1 2.7373 -5.2782 1.9863 31 1 1.4580 -6.3918 1.4462 32 1 1.0456 -4.7280 1.9256 33 1 0.4914 -6.9848 -1.8359 34 1 0.9211 -8.4555 -0.9299 35 1 0.6535 -6.9232 -0.0645 36 1 2.8484 -8.6417 -2.4241 37 1 4.1947 -7.4969 -2.2117 38 1 5.9784 -11.3533 -0.1968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754573447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:44 Heat of formation + Delta-G solvation = -65.996120 kcal Electronic energy + Delta-G solvation = -25328.470263 eV Core-core repulsion = 21325.008325 eV Total energy + Delta-G solvation = -4003.461938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.05861 -40.19136 -39.02152 -37.51320 -36.58677 -35.08265 -32.86970 -32.30523 -31.72355 -29.08791 -28.42261 -26.25828 -25.43818 -24.70413 -23.21708 -21.73206 -20.03943 -19.22511 -18.85122 -17.57771 -17.17205 -17.01958 -16.52253 -16.21173 -15.84652 -15.51343 -15.10905 -14.76760 -14.22121 -14.19147 -13.75741 -13.36327 -13.26947 -13.05892 -12.92191 -12.46143 -12.36689 -12.33349 -12.12524 -12.05827 -11.97993 -11.81260 -11.57373 -11.55099 -11.01749 -10.91632 -10.78975 -10.57014 -10.34481 -10.21574 -10.07180 -9.61731 -9.24120 -9.12186 -8.65109 -7.86218 -6.15087 -4.15028 -0.48946 0.15327 0.99830 1.27091 1.73158 2.17223 2.47335 3.05893 3.25398 3.31347 3.33520 3.67513 3.82517 4.33866 4.34378 4.55902 4.68316 4.90057 4.96846 5.13597 5.18300 5.30826 5.39521 5.41783 5.57455 5.63423 5.72486 5.82707 5.99269 6.14415 6.19360 6.58305 6.84554 6.88755 7.16101 7.38901 7.52181 8.02510 8.37940 8.72277 8.87422 9.44392 10.97983 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.002555 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.925671 B =10956.568479 C =12001.620015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.173 3.827 3 N -0.469 5.469 4 C 0.067 3.933 5 Cl 0.039 6.961 6 S 0.315 5.685 7 C -0.297 4.297 8 C 0.548 3.452 9 O -0.489 6.489 10 O -0.323 6.323 11 C 0.075 3.925 12 H 0.107 0.893 13 C -0.167 4.167 14 C 0.513 3.487 15 O -0.519 6.519 16 N -0.591 5.591 17 C 0.072 3.928 18 C 0.216 3.784 19 C -0.533 4.533 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.265 1.265 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 22.076 0.510 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.033 3.967 3 N -0.187 5.187 4 C -0.231 4.231 5 Cl 0.067 6.933 6 S 0.570 5.430 7 C -0.420 4.420 8 C 0.391 3.609 9 O -0.379 6.379 10 O -0.238 6.238 11 C 0.017 3.983 12 H 0.125 0.875 13 C -0.224 4.224 14 C 0.297 3.703 15 O -0.394 6.394 16 N -0.324 5.324 17 C -0.071 4.071 18 C 0.096 3.904 19 C -0.572 4.572 20 H 0.094 0.906 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.724 22.128 0.427 23.441 hybrid contribution -0.489 -0.108 -0.753 0.904 sum -8.213 22.020 -0.325 23.503 Atomic orbital electron populations 1.20752 0.84945 1.05061 1.04324 1.20802 0.98573 0.83569 0.93781 1.65797 1.03545 1.31906 1.17450 1.27669 0.93365 0.96435 1.05674 1.98459 1.54375 1.44303 1.96198 1.84723 1.02629 0.94074 1.61545 1.24898 0.97610 0.96114 1.23379 1.19166 0.84600 0.83994 0.73131 1.90843 1.15386 1.85395 1.46251 1.86702 1.38908 1.14794 1.83371 1.22730 0.97600 0.78656 0.99351 0.87485 1.22194 1.03860 1.03116 0.93218 1.19722 0.88076 0.82455 0.80036 1.90697 1.18013 1.75626 1.55081 1.47743 1.09225 1.14629 1.60804 1.21880 0.81483 1.03264 1.00507 1.19756 0.89120 0.86877 0.94663 1.21300 1.26114 1.14871 0.94886 0.90629 1.24846 0.95317 0.95408 0.97313 1.69886 1.30742 1.20361 1.32348 0.86855 0.79878 0.77641 0.85367 1.19812 1.20996 1.19021 0.89329 0.89987 0.87892 0.90394 0.89091 0.91005 0.93205 0.89792 0.91868 0.94783 0.94252 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.71 36.01 0.35 -0.47 16 2 C 0.17 1.92 6.83 -83.52 -0.57 1.35 16 3 N -0.47 -5.31 10.50 -8.40 -0.09 -5.40 16 4 C 0.07 0.69 8.02 51.80 0.42 1.10 16 5 Cl 0.04 0.33 29.33 -51.86 -1.52 -1.19 16 6 S 0.32 3.31 23.08 -107.50 -2.48 0.83 16 7 C -0.30 -3.59 6.51 -36.83 -0.24 -3.83 16 8 C 0.55 7.54 7.90 34.02 0.27 7.81 16 9 O -0.49 -6.78 13.59 -19.36 -0.26 -7.04 16 10 O -0.32 -5.09 9.36 -47.55 -0.45 -5.54 16 11 C 0.07 1.17 2.15 -27.88 -0.06 1.11 16 12 H 0.11 1.46 6.32 -51.93 -0.33 1.14 16 13 C -0.17 -2.25 9.19 37.16 0.34 -1.91 16 14 C 0.51 10.33 6.95 -10.98 -0.08 10.26 16 15 O -0.52 -12.63 16.13 -13.53 -0.22 -12.85 16 16 N -0.59 -11.73 2.86 -182.96 -0.52 -12.25 16 17 C 0.07 1.04 9.79 59.85 0.59 1.63 16 18 C 0.22 5.11 4.25 -5.19 -0.02 5.09 16 19 C -0.53 -14.81 9.94 -34.44 -0.34 -15.15 16 20 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 23 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.99 6.06 -51.93 -0.31 0.67 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 35 H 0.06 0.76 4.92 -51.93 -0.26 0.51 16 36 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 37 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -33.68 356.37 -7.58 -41.27 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.07 Total: -2.37 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 0.55 Total: 9.00 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.16 Total: -43.84 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.93 Total: -25.43 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.48 Total: 0.83 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.52 Total: -1.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.68 -7.58 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754573447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.730 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds