Wall clock time and date at job start Sat Apr 11 2020 07:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48502 * 109.47340 * 275.41309 * 3 2 1 5 5 H 1.48501 * 109.47330 * 35.41767 * 3 2 1 6 6 H 1.48503 * 109.47245 * 155.41236 * 3 2 1 7 7 C 1.39930 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99743 * 341.72835 * 7 2 1 9 9 C 1.41395 * 120.00516 * 161.73315 * 7 2 1 10 10 C 1.40775 * 120.21517 * 330.19646 * 9 7 2 11 11 C 1.37624 * 119.85782 * 180.02562 * 10 9 7 12 12 C 1.38571 * 120.30380 * 359.72640 * 11 10 9 13 13 C 1.39111 * 120.44250 * 0.54990 * 12 11 10 14 14 O 1.35894 * 119.93369 * 179.72415 * 13 12 11 15 15 S 1.52208 * 114.00043 * 269.73291 * 14 13 12 16 16 O 1.42100 * 106.39670 * 321.45219 * 15 14 13 17 17 O 1.42098 * 106.40217 * 188.53948 * 15 14 13 18 18 C 1.76199 * 107.22143 * 74.99577 * 15 14 13 19 19 C 1.35598 * 120.30272 * 90.00075 * 18 15 14 20 20 C 1.40067 * 121.93893 * 179.72278 * 19 18 15 21 21 C 1.35600 * 121.94809 * 0.23533 * 20 19 18 22 22 C 1.40841 * 119.38813 * 0.02562 * 21 20 19 23 23 N 1.31016 * 138.56748 * 179.97438 * 22 21 20 24 24 O 1.21472 * 109.09129 * 180.02562 * 23 22 21 25 25 N 1.21476 * 116.28140 * 0.02562 * 24 23 22 26 26 C 1.31011 * 109.08912 * 359.97438 * 25 24 23 27 27 C 1.38136 * 120.13387 * 359.44998 * 13 12 11 28 28 H 0.97006 * 119.99624 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.07101 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.84824 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.77965 * 180.29742 * 12 11 10 32 32 H 1.07994 * 119.03118 * 0.02562 * 19 18 15 33 33 H 1.07998 * 119.02685 * 180.26043 * 20 19 18 34 34 H 1.08001 * 120.30780 * 179.97438 * 21 20 19 35 35 H 1.08011 * 120.15251 * 180.24588 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1125 -1.3938 5 1 1.5017 2.6169 0.8114 6 1 3.5924 1.4098 0.5826 7 6 2.0080 -1.2118 -0.0005 8 1 1.5087 -2.1237 0.2923 9 6 3.3685 -1.2426 -0.3844 10 6 3.8631 -0.3102 -1.3159 11 6 5.1885 -0.3472 -1.6846 12 6 6.0399 -1.2946 -1.1389 13 6 5.5633 -2.2256 -0.2217 14 8 6.4061 -3.1536 0.3027 15 16 6.4771 -4.4472 -0.4963 16 8 5.1558 -4.7140 -0.9459 17 8 7.2309 -5.3620 0.2874 18 6 7.4362 -4.1183 -1.9372 19 6 8.7807 -4.2941 -1.9191 20 6 9.5753 -4.0485 -3.0461 21 6 9.0456 -3.6168 -4.2173 22 6 7.6563 -3.4060 -4.3114 23 7 6.7803 -3.0149 -5.2038 24 8 5.6731 -3.0245 -4.7044 25 7 5.6098 -3.3754 -3.5431 26 6 6.8142 -3.6653 -3.1169 27 6 4.2362 -2.2050 0.1614 28 1 -0.4850 0.8401 -0.0004 29 1 3.2037 0.4320 -1.7408 30 1 5.5679 0.3685 -2.3989 31 1 7.0796 -1.3129 -1.4307 32 1 9.2520 -4.6381 -1.0104 33 1 10.6414 -4.2082 -2.9804 34 1 9.6834 -3.4354 -5.0698 35 1 3.8667 -2.9252 0.8765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755150025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:40:56 Heat of formation + Delta-G solvation = 45.352507 kcal Electronic energy + Delta-G solvation = -28354.812674 eV Core-core repulsion = 24222.778931 eV Total energy + Delta-G solvation = -4132.033744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.050 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.72574 -41.90795 -39.92724 -38.95630 -38.56818 -37.26957 -35.92862 -35.53188 -34.33434 -32.70531 -32.39067 -31.21262 -27.39588 -27.04747 -26.02537 -24.56054 -23.53554 -22.78921 -21.60259 -20.55889 -20.00517 -19.75156 -19.34694 -18.84967 -18.58955 -18.11625 -17.59450 -16.98945 -16.64712 -16.29470 -16.20412 -15.58373 -14.96797 -14.71317 -14.43582 -14.20583 -14.17861 -14.11106 -14.01149 -13.86895 -13.48657 -13.43713 -13.38611 -13.29268 -13.03652 -12.95995 -12.79880 -12.69600 -12.38214 -11.90262 -11.77622 -11.62767 -11.16247 -11.05983 -10.14792 -9.78853 -9.65136 -8.98372 -6.64902 -1.45789 -1.00281 0.02796 0.43316 0.56490 0.58092 1.24607 1.26972 1.39815 1.48172 1.96435 2.04398 2.08200 2.27688 2.38576 2.40332 2.64253 3.04833 3.26166 3.48628 3.64104 3.76512 4.00516 4.10185 4.13831 4.18294 4.30383 4.42798 4.48698 4.68384 4.73006 4.77968 4.87961 5.12166 5.29411 5.31530 5.38529 5.51246 5.72928 6.00251 6.19443 6.51173 6.64433 7.35202 8.09614 Molecular weight = 346.05amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.004553 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.411439 B = 6147.807648 C = 7022.413098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.050 3.950 3 Si 0.963 3.037 4 H -0.245 1.245 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.476 4.476 8 H 0.057 0.943 9 C 0.089 3.911 10 C -0.226 4.226 11 C -0.057 4.057 12 C -0.228 4.228 13 C 0.092 3.908 14 O -0.661 6.661 15 S 2.678 3.322 16 O -0.971 6.971 17 O -0.947 6.947 18 C -0.679 4.679 19 C 0.077 3.923 20 C -0.103 4.103 21 C 0.005 3.995 22 C 0.005 3.995 23 N -0.345 5.345 24 O 0.366 5.634 25 N -0.343 5.343 26 C 0.053 3.947 27 C -0.202 4.202 28 H 0.299 0.701 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.190 0.810 33 H 0.216 0.784 34 H 0.198 0.802 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.033 -2.383 -8.320 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.167 4.167 3 Si 0.784 3.216 4 H -0.170 1.170 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.505 4.505 8 H 0.075 0.925 9 C 0.086 3.914 10 C -0.246 4.246 11 C -0.075 4.075 12 C -0.249 4.249 13 C 0.051 3.949 14 O -0.621 6.621 15 S 2.773 3.227 16 O -0.970 6.970 17 O -0.946 6.946 18 C -0.769 4.769 19 C 0.055 3.945 20 C -0.125 4.125 21 C -0.015 4.015 22 C -0.150 4.150 23 N -0.069 5.069 24 O 0.130 5.870 25 N -0.062 5.062 26 C -0.102 4.102 27 C -0.224 4.224 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.207 0.793 33 H 0.232 0.768 34 H 0.215 0.785 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.481 -2.345 -8.255 23.132 hybrid contribution 0.083 -0.002 0.313 0.324 sum 21.564 -2.347 -7.942 23.100 Atomic orbital electron populations 1.69709 1.09348 1.32073 1.34856 1.26921 0.95431 1.04357 0.89970 0.85532 0.79824 0.75867 0.80341 1.17003 1.19829 1.17186 1.19481 0.93974 0.96067 1.40962 0.92511 1.17593 0.92362 0.91162 0.90240 1.21350 0.97029 1.03845 1.02352 1.20812 0.92227 0.96853 0.97593 1.20695 1.00658 1.00093 1.03432 1.17985 0.87011 0.91415 0.98473 1.85562 1.68137 1.42861 1.65514 1.02258 0.73769 0.73180 0.73486 1.93667 1.37650 1.83450 1.82210 1.93570 1.73165 1.59250 1.68580 1.29639 1.09117 1.22939 1.15198 1.21786 0.89300 0.81697 1.01765 1.21782 1.03755 0.97262 0.89704 1.20995 0.87154 0.92253 1.01078 1.23507 0.99708 1.03293 0.88493 1.75147 0.92100 1.17606 1.22038 1.85457 1.26126 1.57204 1.18174 1.75651 1.21053 1.14500 0.94961 1.21935 0.88237 1.02359 0.97692 1.21194 0.91768 1.04725 1.04724 0.89010 0.86677 0.83509 0.84523 0.79305 0.76771 0.78532 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.06 13.93 21.82 0.30 -44.75 16 2 C 0.05 2.63 5.40 85.25 0.46 3.09 16 3 Si 0.96 40.52 24.52 68.60 1.68 42.20 16 4 H -0.25 -9.43 6.71 99.48 0.67 -8.76 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.25 -10.59 6.86 99.48 0.68 -9.91 16 7 C -0.48 -27.14 9.57 23.46 0.22 -26.91 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 C 0.09 4.67 5.10 -21.30 -0.11 4.56 16 10 C -0.23 -10.34 7.17 22.75 0.16 -10.18 16 11 C -0.06 -2.19 10.02 22.20 0.22 -1.97 16 12 C -0.23 -8.64 8.25 22.56 0.19 -8.45 16 13 C 0.09 3.98 4.79 22.46 0.11 4.09 16 14 O -0.66 -25.33 10.15 -61.64 -0.63 -25.96 16 15 S 2.68 95.88 5.43 -56.49 -0.31 95.57 16 16 O -0.97 -43.55 15.63 -118.78 -1.86 -45.41 16 17 O -0.95 -32.99 17.23 -118.78 -2.05 -35.04 16 18 C -0.68 -18.36 5.28 22.30 0.12 -18.24 16 19 C 0.08 1.17 9.41 22.10 0.21 1.38 16 20 C -0.10 -0.73 9.90 22.10 0.22 -0.51 16 21 C 0.00 0.05 10.08 22.30 0.22 0.28 16 22 C 0.01 0.12 7.76 42.62 0.33 0.45 16 23 N -0.35 -9.24 12.29 -57.44 -0.71 -9.95 16 24 O 0.37 11.74 11.67 139.34 1.63 13.37 16 25 N -0.34 -12.57 11.77 -57.45 -0.68 -13.25 16 26 C 0.05 1.63 6.16 42.62 0.26 1.89 16 27 C -0.20 -10.19 8.92 22.82 0.20 -9.98 16 28 H 0.30 14.28 8.30 -92.70 -0.77 13.51 16 29 H 0.12 5.08 4.73 -2.91 -0.01 5.06 16 30 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.14 4.18 7.96 -2.91 -0.02 4.16 16 32 H 0.19 1.78 7.53 -2.91 -0.02 1.76 16 33 H 0.22 -0.87 8.06 -2.91 -0.02 -0.89 16 34 H 0.20 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.10 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -76.50 319.90 1.33 -75.17 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.11 Total: 8.56 kcal Atomic # 6 Polarization: -63.34 SS G_CDS: 2.82 Total: -60.52 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -1.08 Total: -67.95 kcal Atomic # 8 Polarization: -90.13 SS G_CDS: -2.90 Total: -93.04 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.68 Total: 42.20 kcal Atomic # 16 Polarization: 95.88 SS G_CDS: -0.31 Total: 95.57 kcal Total: -76.50 1.33 -75.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755150025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.525 kcal (2) G-P(sol) polarization free energy of solvation -76.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds