Wall clock time and date at job start Sat Apr 11 2020 07:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.70927 * 125.56849 * 2 1 4 4 C 1.70765 * 91.15182 * 180.20980 * 3 2 1 5 5 Cl 1.73606 * 124.71487 * 179.79426 * 4 3 2 6 6 N 1.28748 * 110.57566 * 359.83405 * 4 3 2 7 7 C 1.33691 * 115.71475 * 359.97438 * 6 4 3 8 8 C 1.47094 * 123.15131 * 179.97438 * 7 6 4 9 9 O 1.21557 * 119.99626 * 180.02562 * 8 7 6 10 10 O 1.34798 * 119.99924 * 0.02562 * 8 7 6 11 11 C 1.45198 * 117.00032 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47053 * 30.00155 * 11 10 8 13 13 C 1.53000 * 109.47219 * 269.99893 * 11 10 8 14 14 C 1.50701 * 109.46925 * 149.99969 * 11 10 8 15 15 O 1.21277 * 120.00200 * 16.03003 * 14 11 10 16 16 N 1.34778 * 120.00015 * 196.02693 * 14 11 10 17 17 C 1.46503 * 119.99620 * 5.36497 * 16 14 11 18 18 C 1.46493 * 120.00365 * 185.36441 * 16 14 11 19 19 C 1.50700 * 109.47159 * 90.00041 * 18 16 14 20 20 H 1.07997 * 120.00004 * 359.97438 * 19 18 16 21 21 C 1.37874 * 120.00205 * 180.02562 * 19 18 16 22 22 N 1.31522 * 119.99814 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00214 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46924 * 90.00177 * 23 21 19 25 25 H 1.48499 * 109.47096 * 209.99937 * 23 21 19 26 26 H 1.48499 * 109.47100 * 330.00158 * 23 21 19 27 27 H 1.08999 * 109.46824 * 270.08485 * 1 2 3 28 28 H 1.08996 * 109.47123 * 30.08459 * 1 2 3 29 29 H 1.08997 * 109.47212 * 150.08878 * 1 2 3 30 30 H 1.09004 * 109.47012 * 306.14055 * 13 11 10 31 31 H 1.08994 * 109.47120 * 66.13259 * 13 11 10 32 32 H 1.09001 * 109.47253 * 186.13700 * 13 11 10 33 33 H 1.08998 * 109.47160 * 84.82413 * 17 16 14 34 34 H 1.09000 * 109.47181 * 204.82033 * 17 16 14 35 35 H 1.08998 * 109.47314 * 324.82298 * 17 16 14 36 36 H 1.09000 * 109.47560 * 209.99989 * 18 16 14 37 37 H 1.08997 * 109.47093 * 330.00146 * 18 16 14 38 38 H 0.96999 * 119.99906 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5013 1.3904 0.0000 4 6 3.9100 0.4252 -0.0063 5 17 5.5322 1.0436 -0.0149 6 7 3.6020 -0.8249 -0.0045 7 6 2.2938 -1.1000 0.0021 8 6 1.7600 -2.4707 0.0045 9 8 0.5585 -2.6549 0.0102 10 8 2.6032 -3.5223 0.0004 11 6 2.0063 -4.8459 0.0036 12 1 1.0430 -4.8113 -0.5054 13 6 1.8039 -5.3106 1.4472 14 6 2.9178 -5.8098 -0.7113 15 8 4.0741 -5.5095 -0.9201 16 7 2.4480 -7.0056 -1.1185 17 6 1.0251 -7.3219 -0.9723 18 6 3.3603 -7.9891 -1.7074 19 6 3.9254 -8.8649 -0.6190 20 1 3.6345 -8.7046 0.4087 21 6 4.8146 -9.8700 -0.9349 22 7 5.1693 -10.0649 -2.1864 23 14 5.5157 -10.9552 0.4143 24 1 4.6349 -12.1349 0.6084 25 1 6.8750 -11.4107 0.0270 26 1 5.5944 -10.1826 1.6800 27 1 -0.3633 0.0015 1.0277 28 1 -0.3633 0.8892 -0.5151 29 1 -0.3633 -0.8907 -0.5124 30 1 2.7484 -5.2413 1.9870 31 1 1.0611 -4.6773 1.9321 32 1 1.4582 -6.3444 1.4511 33 1 0.4757 -6.9290 -1.8278 34 1 0.8964 -8.4032 -0.9234 35 1 0.6444 -6.8690 -0.0569 36 1 2.8171 -8.6051 -2.4240 37 1 4.1734 -7.4714 -2.2161 38 1 5.7952 -10.7718 -2.4086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763288632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:11 Heat of formation + Delta-G solvation = -69.952522 kcal Electronic energy + Delta-G solvation = -25421.379462 eV Core-core repulsion = 21417.745962 eV Total energy + Delta-G solvation = -4003.633500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.17807 -39.87207 -38.75214 -37.33264 -36.52006 -34.86387 -33.05885 -32.82182 -31.63907 -28.47991 -27.76286 -26.05998 -25.25012 -24.49772 -23.50349 -22.09061 -20.20105 -19.27686 -18.77841 -17.33593 -16.90307 -16.55058 -16.49503 -16.18053 -15.80302 -15.33952 -15.09929 -14.58117 -14.28928 -14.01659 -13.69874 -13.51814 -13.32234 -13.10477 -12.83249 -12.36055 -12.29223 -12.16680 -12.06126 -12.03199 -11.84654 -11.72663 -11.42018 -11.22162 -10.91814 -10.76639 -10.68601 -10.55054 -10.27187 -10.16540 -9.98512 -9.64772 -9.35512 -8.88851 -8.44265 -7.70239 -6.05124 -4.10421 -0.16319 0.16501 0.84568 1.29813 1.38352 2.43797 2.76010 3.25985 3.30307 3.37393 3.42297 3.75351 4.02696 4.25659 4.43258 4.48054 4.81824 4.98822 5.07373 5.09529 5.11949 5.23661 5.29480 5.52855 5.60660 5.69636 5.75403 5.86900 6.08887 6.23833 6.30620 6.75126 7.00086 7.41978 7.47725 7.59442 7.90979 8.20726 8.30744 8.85680 9.00755 9.54695 11.03026 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.002584 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.101173 B =10832.639289 C =11998.706597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.176 4.176 3 S 0.281 5.719 4 C 0.043 3.957 5 Cl 0.038 6.962 6 N -0.398 5.398 7 C 0.029 3.971 8 C 0.548 3.452 9 O -0.498 6.498 10 O -0.301 6.301 11 C 0.069 3.931 12 H 0.104 0.896 13 C -0.165 4.165 14 C 0.509 3.491 15 O -0.515 6.515 16 N -0.597 5.597 17 C 0.074 3.926 18 C 0.246 3.754 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 25.113 5.410 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.300 4.300 3 S 0.535 5.465 4 C -0.262 4.262 5 Cl 0.065 6.935 6 N -0.115 5.115 7 C -0.104 4.104 8 C 0.389 3.611 9 O -0.387 6.387 10 O -0.214 6.214 11 C 0.011 3.989 12 H 0.122 0.878 13 C -0.222 4.222 14 C 0.293 3.707 15 O -0.390 6.390 16 N -0.331 5.331 17 C -0.070 4.070 18 C 0.127 3.873 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.959 25.730 5.161 28.439 hybrid contribution 0.381 -1.719 0.714 1.900 sum -10.578 24.011 5.875 26.887 Atomic orbital electron populations 1.20673 0.84505 1.05330 1.04488 1.25847 1.04203 0.96041 1.03896 1.82934 0.92863 1.06396 1.64350 1.27023 0.95422 0.93115 1.10675 1.98455 1.14758 1.83579 1.96679 1.66768 1.16516 1.16736 1.11438 1.18935 0.86848 0.92700 1.11937 1.19686 0.84270 0.84431 0.72677 1.90807 1.15307 1.85709 1.46870 1.86830 1.38293 1.14146 1.82168 1.22782 0.97595 0.79453 0.99098 0.87789 1.22170 1.03667 1.02864 0.93502 1.19715 0.88102 0.82519 0.80349 1.90722 1.17782 1.75637 1.54828 1.48070 1.09170 1.15083 1.60769 1.21830 0.82063 1.02969 1.00155 1.19363 0.88661 0.85485 0.93769 1.21430 1.26482 1.14955 0.93954 0.92343 1.24941 0.96035 0.97430 0.95676 1.69936 1.33893 1.32358 1.17055 0.86480 0.78436 0.80381 0.82032 1.20625 1.21053 1.19836 0.89111 0.90387 0.87199 0.90534 0.91240 0.89302 0.93455 0.90069 0.92265 0.94625 0.93570 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 9.64 36.01 0.35 -0.30 16 2 C -0.18 -1.69 6.40 -35.37 -0.23 -1.92 16 3 S 0.28 2.03 22.93 -107.50 -2.47 -0.44 16 4 C 0.04 0.48 7.98 51.47 0.41 0.89 16 5 Cl 0.04 0.37 29.33 -51.86 -1.52 -1.15 16 6 N -0.40 -5.88 10.61 -9.47 -0.10 -5.98 16 7 C 0.03 0.39 6.71 -84.53 -0.57 -0.18 16 8 C 0.55 8.53 7.91 34.32 0.27 8.80 16 9 O -0.50 -7.30 13.36 -19.31 -0.26 -7.56 16 10 O -0.30 -5.58 9.40 -47.29 -0.44 -6.02 16 11 C 0.07 1.21 2.14 -27.88 -0.06 1.15 16 12 H 0.10 1.59 6.32 -51.93 -0.33 1.27 16 13 C -0.16 -2.43 9.19 37.16 0.34 -2.08 16 14 C 0.51 11.35 6.95 -10.98 -0.08 11.27 16 15 O -0.51 -13.99 16.13 -13.54 -0.22 -14.21 16 16 N -0.60 -12.96 2.86 -182.96 -0.52 -13.49 16 17 C 0.07 1.17 9.79 59.85 0.59 1.76 16 18 C 0.25 6.51 5.18 -5.20 -0.03 6.49 16 19 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 23 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.11 0.97 6.00 -51.93 -0.31 0.66 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.23 6.33 -51.93 -0.33 0.90 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 35 H 0.06 0.78 4.92 -51.93 -0.26 0.52 16 36 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.05 1.39 7.35 -51.93 -0.38 1.01 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -35.79 359.37 -7.92 -43.71 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.10 Total: -3.39 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 0.58 Total: 12.18 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.11 Total: -45.45 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.92 Total: -27.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.47 Total: -0.44 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.52 Total: -1.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.79 -7.92 -43.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763288632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.247 kcal (2) G-P(sol) polarization free energy of solvation -35.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds