Wall clock time and date at job start Sat Apr 11 2020 07:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70936 * 125.57341 * 2 1 4 4 C 1.70762 * 91.15375 * 180.20272 * 3 2 1 5 5 Cl 1.73611 * 124.71226 * 179.79244 * 4 3 2 6 6 N 1.28744 * 110.57803 * 359.83272 * 4 3 2 7 7 C 1.33691 * 115.71381 * 359.97438 * 6 4 3 8 8 C 1.47087 * 123.15073 * 179.97438 * 7 6 4 9 9 O 1.21559 * 120.00156 * 180.02562 * 8 7 6 10 10 O 1.34814 * 120.00093 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00096 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46975 * 330.00236 * 11 10 8 13 13 C 1.52994 * 109.46903 * 90.00234 * 11 10 8 14 14 C 1.50704 * 109.47107 * 210.00298 * 11 10 8 15 15 O 1.21281 * 119.99620 * 345.80604 * 14 11 10 16 16 N 1.34770 * 119.99916 * 165.81149 * 14 11 10 17 17 C 1.46500 * 120.00248 * 4.44544 * 16 14 11 18 18 C 1.46498 * 119.99836 * 184.17639 * 16 14 11 19 19 C 1.50700 * 109.47272 * 270.26961 * 18 16 14 20 20 H 1.08002 * 119.99718 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00424 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99313 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00080 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47042 * 60.00678 * 23 21 19 25 25 H 1.48498 * 109.46963 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47334 * 300.00318 * 23 21 19 27 27 H 1.08996 * 109.47527 * 270.08797 * 1 2 3 28 28 H 1.08999 * 109.46730 * 30.09179 * 1 2 3 29 29 H 1.08999 * 109.47033 * 150.08434 * 1 2 3 30 30 H 1.09007 * 109.47005 * 172.32767 * 13 11 10 31 31 H 1.09000 * 109.47518 * 292.32995 * 13 11 10 32 32 H 1.09006 * 109.47291 * 52.33175 * 13 11 10 33 33 H 1.09000 * 109.47558 * 268.28481 * 17 16 14 34 34 H 1.09004 * 109.47186 * 28.29140 * 17 16 14 35 35 H 1.09001 * 109.46945 * 148.28284 * 17 16 14 36 36 H 1.09004 * 109.47199 * 30.27559 * 18 16 14 37 37 H 1.09002 * 109.47107 * 150.27183 * 18 16 14 38 38 H 0.97008 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5014 1.3903 0.0000 4 6 3.9100 0.4251 -0.0060 5 17 5.5322 1.0436 -0.0146 6 7 3.6020 -0.8249 -0.0042 7 6 2.2937 -1.1000 0.0024 8 6 1.7600 -2.4706 0.0048 9 8 0.5584 -2.6549 0.0103 10 8 2.6032 -3.5224 0.0008 11 6 2.0063 -4.8459 0.0041 12 1 1.0481 -4.8110 0.5227 13 6 1.7895 -5.3111 -1.4371 14 6 2.9249 -5.8096 0.7103 15 8 4.0743 -5.4960 0.9370 16 7 2.4691 -7.0198 1.0897 17 6 1.1115 -7.4369 0.7304 18 6 3.3334 -7.9206 1.8563 19 6 4.1216 -8.7878 0.9088 20 1 3.9921 -8.6784 -0.1578 21 6 5.0090 -9.7199 1.4035 22 7 5.1671 -9.8526 2.7024 23 14 5.9865 -10.7943 0.2289 24 1 6.8210 -9.9354 -0.6493 25 1 6.8625 -11.7074 1.0060 26 1 5.0528 -11.5943 -0.6037 27 1 -0.3634 0.0016 1.0276 28 1 -0.3633 0.8892 -0.5153 29 1 -0.3633 -0.8907 -0.5125 30 1 1.4699 -6.3533 -1.4384 31 1 1.0222 -4.6953 -1.9063 32 1 2.7219 -5.2164 -1.9937 33 1 0.4229 -7.1595 1.5285 34 1 0.8129 -6.9442 -0.1949 35 1 1.0886 -8.5177 0.5902 36 1 4.0190 -7.3336 2.4675 37 1 2.7207 -8.5507 2.5011 38 1 5.7911 -10.5087 3.0505 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763288634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:15 Heat of formation + Delta-G solvation = -65.638596 kcal Electronic energy + Delta-G solvation = -25417.816842 eV Core-core repulsion = 21414.370407 eV Total energy + Delta-G solvation = -4003.446434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.17925 -39.87835 -38.75711 -37.32958 -36.51912 -34.86935 -33.05883 -32.85415 -31.64751 -28.49419 -27.68353 -26.16064 -25.23461 -24.45024 -23.48680 -22.10565 -20.20599 -19.27696 -18.82190 -17.33206 -16.89593 -16.54986 -16.46474 -16.20828 -15.77980 -15.33194 -15.13053 -14.53386 -14.31214 -14.01637 -13.72474 -13.57163 -13.35187 -13.09949 -12.84838 -12.49041 -12.29902 -12.15038 -12.05456 -12.03008 -11.84479 -11.63380 -11.34224 -11.18666 -10.88417 -10.73862 -10.70484 -10.53309 -10.27062 -10.14374 -9.98252 -9.64558 -9.35351 -8.87376 -8.42269 -7.69846 -6.03391 -4.08150 -0.16135 0.16685 0.84741 1.29828 1.38585 2.43486 2.75969 3.27302 3.33727 3.38050 3.42415 3.75229 4.02602 4.25687 4.44911 4.47884 4.79940 4.96381 5.07537 5.09587 5.11243 5.23828 5.31202 5.43456 5.59536 5.67507 5.75485 5.88865 6.07354 6.26285 6.29759 6.75297 7.00347 7.40710 7.47833 7.59352 7.92395 8.22372 8.31611 8.87486 9.02002 9.56616 11.04845 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.002612 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.315843 B =10718.556286 C =11989.937732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.176 4.176 3 S 0.281 5.719 4 C 0.043 3.957 5 Cl 0.038 6.962 6 N -0.398 5.398 7 C 0.029 3.971 8 C 0.548 3.452 9 O -0.498 6.498 10 O -0.300 6.300 11 C 0.070 3.930 12 H 0.105 0.895 13 C -0.171 4.171 14 C 0.507 3.493 15 O -0.512 6.512 16 N -0.597 5.597 17 C 0.067 3.933 18 C 0.248 3.752 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 24.580 -6.992 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.300 4.300 3 S 0.535 5.465 4 C -0.262 4.262 5 Cl 0.065 6.935 6 N -0.115 5.115 7 C -0.104 4.104 8 C 0.390 3.610 9 O -0.387 6.387 10 O -0.214 6.214 11 C 0.011 3.989 12 H 0.123 0.877 13 C -0.228 4.228 14 C 0.290 3.710 15 O -0.386 6.386 16 N -0.331 5.331 17 C -0.076 4.076 18 C 0.129 3.871 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.181 25.216 -6.703 28.386 hybrid contribution 0.541 -1.692 -0.564 1.864 sum -10.640 23.524 -7.267 26.821 Atomic orbital electron populations 1.20671 0.84509 1.05256 1.04560 1.25847 1.04198 0.96039 1.03892 1.82935 0.92864 1.06395 1.64353 1.27022 0.95424 0.93113 1.10665 1.98455 1.14757 1.83580 1.96679 1.66766 1.16508 1.16740 1.11438 1.18929 0.86851 0.92692 1.11950 1.19688 0.84266 0.84426 0.72666 1.90807 1.15307 1.85702 1.46872 1.86833 1.38264 1.14110 1.82169 1.22761 0.97578 0.79537 0.99034 0.87702 1.22313 1.03650 1.03073 0.93755 1.19731 0.87993 0.82683 0.80558 1.90736 1.17695 1.76177 1.54015 1.48073 1.14840 1.15459 1.54718 1.21971 0.83749 1.02330 0.99577 1.19337 0.89150 0.87597 0.90986 1.21384 1.23363 1.18550 0.93316 0.92401 1.24937 0.96618 0.97293 0.95241 1.69925 1.36583 1.35407 1.11489 0.86540 0.79994 0.80012 0.80774 1.20107 1.21173 1.20246 0.89069 0.90406 0.87217 0.88921 0.91177 0.90521 0.93405 0.91610 0.90268 0.93840 0.94607 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 9.64 36.00 0.35 -0.30 16 2 C -0.18 -1.69 6.40 -35.38 -0.23 -1.92 16 3 S 0.28 2.04 22.93 -107.50 -2.47 -0.43 16 4 C 0.04 0.48 7.98 51.47 0.41 0.89 16 5 Cl 0.04 0.38 29.33 -51.86 -1.52 -1.15 16 6 N -0.40 -5.89 10.61 -9.47 -0.10 -5.99 16 7 C 0.03 0.39 6.71 -84.54 -0.57 -0.18 16 8 C 0.55 8.53 7.91 34.32 0.27 8.80 16 9 O -0.50 -7.30 13.36 -19.31 -0.26 -7.56 16 10 O -0.30 -5.56 9.39 -47.37 -0.44 -6.00 16 11 C 0.07 1.20 2.17 -27.88 -0.06 1.14 16 12 H 0.11 1.61 6.71 -51.93 -0.35 1.26 16 13 C -0.17 -2.42 9.15 37.15 0.34 -2.09 16 14 C 0.51 11.28 7.00 -10.99 -0.08 11.20 16 15 O -0.51 -13.96 16.19 -13.67 -0.22 -14.18 16 16 N -0.60 -12.97 2.86 -182.95 -0.52 -13.49 16 17 C 0.07 1.07 9.86 59.85 0.59 1.66 16 18 C 0.25 6.59 5.13 -5.19 -0.03 6.56 16 19 C -0.53 -15.13 9.38 -34.44 -0.32 -15.45 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 23 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.11 0.95 6.01 -51.93 -0.31 0.64 16 30 H 0.09 1.21 5.52 -51.93 -0.29 0.92 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.85 4.21 -51.93 -0.22 0.64 16 35 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 36 H 0.04 1.31 7.49 -51.93 -0.39 0.92 16 37 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -36.09 358.53 -7.89 -43.98 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.05 Total: -3.54 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 0.58 Total: 12.00 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.11 Total: -45.63 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.92 Total: -27.75 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.47 Total: -0.43 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.52 Total: -1.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.09 -7.89 -43.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763288634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.661 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds