Wall clock time and date at job start Sat Apr 11 2020 07:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70936 * 125.57341 * 2 1 4 4 C 1.70762 * 91.15375 * 180.20272 * 3 2 1 5 5 Cl 1.73611 * 124.71226 * 179.79244 * 4 3 2 6 6 N 1.28744 * 110.57803 * 359.83272 * 4 3 2 7 7 C 1.33691 * 115.71381 * 359.97438 * 6 4 3 8 8 C 1.47087 * 123.15073 * 179.97438 * 7 6 4 9 9 O 1.21559 * 120.00156 * 180.02562 * 8 7 6 10 10 O 1.34814 * 120.00093 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00096 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46975 * 330.00236 * 11 10 8 13 13 C 1.52994 * 109.46903 * 90.00234 * 11 10 8 14 14 C 1.50704 * 109.47107 * 210.00298 * 11 10 8 15 15 O 1.21281 * 119.99620 * 345.80604 * 14 11 10 16 16 N 1.34770 * 119.99916 * 165.81149 * 14 11 10 17 17 C 1.46500 * 120.00248 * 4.44544 * 16 14 11 18 18 C 1.46498 * 119.99836 * 184.17639 * 16 14 11 19 19 C 1.50700 * 109.47272 * 270.26961 * 18 16 14 20 20 H 1.08002 * 119.99718 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00424 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99313 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00080 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47042 * 60.00678 * 23 21 19 25 25 H 1.48498 * 109.46963 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47334 * 300.00318 * 23 21 19 27 27 H 1.08996 * 109.47527 * 270.08797 * 1 2 3 28 28 H 1.08999 * 109.46730 * 30.09179 * 1 2 3 29 29 H 1.08999 * 109.47033 * 150.08434 * 1 2 3 30 30 H 1.09007 * 109.47005 * 172.32767 * 13 11 10 31 31 H 1.09000 * 109.47518 * 292.32995 * 13 11 10 32 32 H 1.09006 * 109.47291 * 52.33175 * 13 11 10 33 33 H 1.09000 * 109.47558 * 268.28481 * 17 16 14 34 34 H 1.09004 * 109.47186 * 28.29140 * 17 16 14 35 35 H 1.09001 * 109.46945 * 148.28284 * 17 16 14 36 36 H 1.09004 * 109.47199 * 30.27559 * 18 16 14 37 37 H 1.09002 * 109.47107 * 150.27183 * 18 16 14 38 38 H 0.97008 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5014 1.3903 0.0000 4 6 3.9100 0.4251 -0.0060 5 17 5.5322 1.0436 -0.0146 6 7 3.6020 -0.8249 -0.0042 7 6 2.2937 -1.1000 0.0024 8 6 1.7600 -2.4706 0.0048 9 8 0.5584 -2.6549 0.0103 10 8 2.6032 -3.5224 0.0008 11 6 2.0063 -4.8459 0.0041 12 1 1.0481 -4.8110 0.5227 13 6 1.7895 -5.3111 -1.4371 14 6 2.9249 -5.8096 0.7103 15 8 4.0743 -5.4960 0.9370 16 7 2.4691 -7.0198 1.0897 17 6 1.1115 -7.4369 0.7304 18 6 3.3334 -7.9206 1.8563 19 6 4.1216 -8.7878 0.9088 20 1 3.9921 -8.6784 -0.1578 21 6 5.0090 -9.7199 1.4035 22 7 5.1671 -9.8526 2.7024 23 14 5.9865 -10.7943 0.2289 24 1 6.8210 -9.9354 -0.6493 25 1 6.8625 -11.7074 1.0060 26 1 5.0528 -11.5943 -0.6037 27 1 -0.3634 0.0016 1.0276 28 1 -0.3633 0.8892 -0.5153 29 1 -0.3633 -0.8907 -0.5125 30 1 1.4699 -6.3533 -1.4384 31 1 1.0222 -4.6953 -1.9063 32 1 2.7219 -5.2164 -1.9937 33 1 0.4229 -7.1595 1.5285 34 1 0.8129 -6.9442 -0.1949 35 1 1.0886 -8.5177 0.5902 36 1 4.0190 -7.3336 2.4675 37 1 2.7207 -8.5507 2.5011 38 1 5.7911 -10.5087 3.0505 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763288634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:14 Heat of formation + Delta-G solvation = -90.072253 kcal Electronic energy + Delta-G solvation = -25418.876365 eV Core-core repulsion = 21414.370407 eV Total energy + Delta-G solvation = -4004.505957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26178 -41.12588 -40.19744 -38.12806 -37.74335 -36.72148 -34.90346 -33.79690 -33.14023 -29.74113 -29.23177 -27.68059 -26.19471 -25.75980 -24.92769 -23.59209 -21.29504 -20.52459 -20.04751 -18.71266 -18.44679 -18.22873 -17.57911 -17.26832 -17.23459 -16.75388 -16.44533 -16.11796 -16.01599 -14.89689 -14.83712 -14.66048 -14.35786 -14.25487 -14.11969 -13.83170 -13.68558 -13.62716 -13.34954 -13.11107 -13.06771 -12.91276 -12.79423 -12.62535 -12.61811 -12.38979 -12.19301 -11.99916 -11.74961 -11.68844 -11.09060 -10.67046 -10.66292 -10.64593 -10.13058 -9.54377 -8.24477 -6.39068 -0.93564 -0.53832 0.07022 0.30212 0.62489 1.24786 1.35619 1.40856 1.47398 1.58594 1.74759 2.27987 2.40889 3.00163 3.05574 3.35603 3.54782 3.60379 3.70765 3.79822 4.11702 4.21662 4.49732 4.57661 4.62862 4.65559 4.71218 4.83999 4.89797 5.00599 5.10422 5.16532 5.28249 5.49998 5.76034 5.91196 6.01876 6.43851 6.58946 6.69196 7.18727 7.34445 8.83038 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.002612 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.315843 B =10718.556286 C =11989.937732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.167 4.167 3 S 0.405 5.595 4 C 0.012 3.988 5 Cl 0.035 6.965 6 N -0.452 5.452 7 C -0.013 4.013 8 C 0.544 3.456 9 O -0.495 6.495 10 O -0.333 6.333 11 C 0.080 3.920 12 H 0.129 0.871 13 C -0.163 4.163 14 C 0.497 3.503 15 O -0.578 6.578 16 N -0.600 5.600 17 C 0.060 3.940 18 C 0.261 3.739 19 C -0.545 4.545 20 H 0.056 0.944 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.969 3.031 24 H -0.280 1.280 25 H -0.278 1.278 26 H -0.257 1.257 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.078 0.922 36 H -0.005 1.005 37 H 0.034 0.966 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.546 26.205 -8.634 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.293 4.293 3 S 0.659 5.341 4 C -0.292 4.292 5 Cl 0.063 6.937 6 N -0.169 5.169 7 C -0.145 4.145 8 C 0.387 3.613 9 O -0.384 6.384 10 O -0.248 6.248 11 C 0.022 3.978 12 H 0.146 0.854 13 C -0.220 4.220 14 C 0.284 3.716 15 O -0.457 6.457 16 N -0.332 5.332 17 C -0.081 4.081 18 C 0.140 3.860 19 C -0.583 4.583 20 H 0.074 0.926 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.792 3.208 24 H -0.206 1.206 25 H -0.203 1.203 26 H -0.181 1.181 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.013 0.987 37 H 0.052 0.948 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.752 26.846 -8.362 31.301 hybrid contribution 1.237 -2.017 -0.001 2.366 sum -12.516 24.828 -8.362 29.035 Atomic orbital electron populations 1.20845 0.82498 1.06336 1.05556 1.26379 1.05799 0.96345 1.00730 1.82494 0.88331 1.02379 1.60892 1.27355 0.96953 0.93643 1.11215 1.98447 1.15334 1.83202 1.96723 1.66656 1.17844 1.19195 1.13242 1.18818 0.87308 0.92521 1.15890 1.20057 0.84260 0.84570 0.72423 1.90780 1.14755 1.85791 1.47064 1.86828 1.40035 1.14927 1.82967 1.22654 0.96246 0.78567 1.00338 0.85374 1.22320 1.03868 1.04386 0.91443 1.20692 0.87981 0.83230 0.79735 1.90691 1.20810 1.77559 1.56679 1.48069 1.16449 1.14927 1.53752 1.22325 0.80804 1.02771 1.02228 1.18837 0.89075 0.87249 0.90847 1.21664 1.24163 1.19063 0.93420 0.92622 1.25876 0.97567 0.98715 0.97007 1.70046 1.37275 1.36147 1.13347 0.85455 0.78586 0.78148 0.78561 1.20570 1.20264 1.18084 0.87833 0.86790 0.88683 0.87510 0.88189 0.92093 0.90669 0.88201 0.90293 0.98696 0.94845 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.64 71.23 0.69 -0.32 16 2 C -0.17 -2.84 6.40 24.99 0.16 -2.68 16 3 S 0.41 4.65 22.93 -56.49 -1.30 3.35 16 4 C 0.01 0.27 7.98 130.70 1.04 1.31 16 5 Cl 0.04 0.70 29.33 -2.72 -0.08 0.62 16 6 N -0.45 -13.65 10.61 -183.87 -1.95 -15.60 16 7 C -0.01 -0.36 6.71 40.49 0.27 -0.09 16 8 C 0.54 16.95 7.91 70.14 0.55 17.51 16 9 O -0.49 -13.90 13.36 19.64 0.26 -13.64 16 10 O -0.33 -12.70 9.39 -50.99 -0.48 -13.17 16 11 C 0.08 2.76 2.17 29.85 0.06 2.82 16 12 H 0.13 3.74 6.71 -2.39 -0.02 3.72 16 13 C -0.16 -4.41 9.15 71.98 0.66 -3.75 16 14 C 0.50 22.94 7.00 87.66 0.61 23.56 16 15 O -0.58 -33.70 16.19 15.35 0.25 -33.45 16 16 N -0.60 -26.60 2.86 -851.13 -2.43 -29.03 16 17 C 0.06 1.80 9.86 127.77 1.26 3.06 16 18 C 0.26 14.50 5.13 85.63 0.44 14.94 16 19 C -0.54 -32.12 9.38 25.60 0.24 -31.88 16 20 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 21 C 0.01 0.44 5.46 84.66 0.46 0.90 16 22 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 23 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 1.40 6.01 -2.39 -0.01 1.39 16 30 H 0.11 2.52 5.52 -2.38 -0.01 2.51 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 2.31 4.21 -2.39 -0.01 2.30 16 35 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 36 H -0.01 -0.33 7.49 -2.38 -0.02 -0.35 16 37 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -85.17 358.53 4.16 -81.01 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.12 Total: 3.66 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 6.45 Total: 25.38 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -4.10 Total: -101.60 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: 0.03 Total: -60.26 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.30 Total: 3.35 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -85.17 4.16 -81.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763288634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.062 kcal (2) G-P(sol) polarization free energy of solvation -85.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds