Wall clock time and date at job start Sat Apr 11 2020 07:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99749 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00165 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99926 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00033 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34774 * 116.99772 * 180.02562 * 14 13 11 16 16 O 1.21530 * 120.00480 * 359.97438 * 15 14 13 17 17 C 1.47223 * 119.99800 * 180.02562 * 15 14 13 18 18 C 1.40426 * 120.21765 * 89.72296 * 17 15 14 19 19 N 1.38905 * 120.17922 * 0.02562 * 18 17 15 20 20 C 1.38990 * 119.64114 * 179.77237 * 18 17 15 21 21 Cl 1.73604 * 119.95384 * 180.24837 * 20 18 17 22 22 C 1.38109 * 120.08705 * 0.50225 * 20 18 17 23 23 C 1.38522 * 120.44479 * 359.74843 * 22 20 18 24 24 C 1.37932 * 120.35673 * 359.97438 * 23 22 20 25 25 Cl 1.73603 * 120.04723 * 179.97438 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47718 * 59.99471 * 9 7 2 28 28 H 1.09004 * 109.47331 * 299.99598 * 9 7 2 29 29 H 0.97004 * 120.00363 * 359.97438 * 10 9 7 30 30 H 1.09004 * 109.47103 * 60.00241 * 13 11 10 31 31 H 1.09000 * 109.47247 * 300.00119 * 13 11 10 32 32 H 0.96999 * 119.99802 * 0.02562 * 19 18 17 33 33 H 0.97000 * 119.99650 * 180.02562 * 19 18 17 34 34 H 1.07994 * 119.77389 * 179.72340 * 22 20 18 35 35 H 1.08002 * 119.82344 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 5.3248 -2.8218 0.0024 12 8 6.1130 -1.9000 0.0021 13 6 5.8271 -4.2426 0.0041 14 8 7.2791 -4.2427 0.0046 15 6 7.8909 -5.4436 0.0055 16 8 7.2290 -6.4628 0.0065 17 6 9.3611 -5.5207 0.0066 18 6 10.0663 -5.5513 1.2206 19 7 9.3805 -5.5095 2.4278 20 6 11.4540 -5.6290 1.2076 21 17 12.3336 -5.6738 2.7036 22 6 12.1342 -5.6652 0.0062 23 6 11.4425 -5.6299 -1.1934 24 6 10.0650 -5.5586 -1.2020 25 17 9.2063 -5.5141 -2.7100 26 1 -0.4850 0.8401 -0.0004 27 1 3.8746 -0.6801 0.8910 28 1 3.8752 -0.6806 -0.8889 29 1 3.3694 -3.3127 0.0029 30 1 5.4636 -4.7575 -0.8852 31 1 5.4638 -4.7553 0.8948 32 1 8.4118 -5.4594 2.4338 33 1 9.8703 -5.5304 3.2648 34 1 13.2127 -5.7211 0.0021 35 1 11.9846 -5.6584 -2.1271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785618896.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:37 Heat of formation + Delta-G solvation = -106.717193 kcal Electronic energy + Delta-G solvation = -24431.866983 eV Core-core repulsion = 20288.762446 eV Total energy + Delta-G solvation = -4143.104537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.032 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11464 -39.73176 -38.80482 -37.32041 -36.76396 -36.46109 -35.22639 -34.41709 -32.46849 -31.70061 -29.66476 -29.29195 -27.25985 -24.85472 -23.01670 -22.26829 -21.34551 -20.18183 -18.73695 -18.16262 -17.82342 -17.67228 -16.96269 -16.48301 -16.09126 -15.48066 -15.36808 -15.26784 -15.11304 -14.61695 -14.57857 -14.16449 -13.38136 -13.23318 -12.97061 -12.92568 -12.69110 -12.54235 -12.40587 -12.11695 -12.02273 -11.58316 -11.47962 -11.10411 -11.00753 -10.92359 -10.90724 -10.79684 -10.02685 -9.57585 -9.43089 -9.30147 -8.84532 -8.31133 -8.27885 -6.26698 -4.29920 0.26206 0.73061 1.42793 1.55443 1.78376 2.22553 2.89511 2.97083 3.10345 3.23507 3.30422 3.38045 3.72077 4.14351 4.28646 4.42819 4.48308 4.70820 4.79809 4.98968 5.03034 5.06222 5.09562 5.15759 5.44977 5.53831 5.83282 6.02296 6.59124 6.69531 6.97587 6.98052 7.04536 7.28371 7.35528 8.00861 8.37485 8.63986 8.76053 9.32262 10.85025 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002355 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.067160 B =11886.643474 C =12558.329758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.533 6.533 13 C 0.045 3.955 14 O -0.316 6.316 15 C 0.518 3.482 16 O -0.484 6.484 17 C -0.174 4.174 18 C 0.287 3.713 19 N -0.850 5.850 20 C -0.119 4.119 21 Cl -0.055 7.055 22 C -0.024 4.024 23 C -0.161 4.161 24 C 0.057 3.943 25 Cl -0.040 7.040 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.024 0.976 29 H 0.399 0.601 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.406 0.594 33 H 0.411 0.589 34 H 0.150 0.850 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.639 -15.342 1.673 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.411 6.411 13 C -0.033 4.033 14 O -0.230 6.230 15 C 0.359 3.641 16 O -0.371 6.371 17 C -0.182 4.182 18 C 0.175 3.825 19 N -0.387 5.387 20 C -0.151 4.151 21 Cl -0.026 7.026 22 C -0.043 4.043 23 C -0.182 4.182 24 C 0.029 3.971 25 Cl -0.010 7.010 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.233 0.767 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.236 0.764 33 H 0.243 0.757 34 H 0.168 0.832 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 25.764 -14.813 1.694 29.767 hybrid contribution -0.429 0.453 0.305 0.695 sum 25.335 -14.359 1.999 29.190 Atomic orbital electron populations 1.69877 1.06215 1.27527 1.49095 1.24789 0.94803 0.99188 0.93775 0.86820 0.80562 0.83198 0.79144 1.19759 1.20830 1.18470 1.21058 0.88301 0.95341 1.53728 0.90112 1.19561 0.95382 0.77882 0.97095 1.46065 1.04776 1.11581 1.72493 1.19865 0.83767 0.89282 0.78603 1.90717 1.55275 1.45551 1.49514 1.22940 0.77496 0.97749 1.05090 1.86768 1.21945 1.31423 1.82908 1.20725 0.88311 0.82039 0.73032 1.90909 1.66172 1.35985 1.44037 1.18050 0.89863 1.18574 0.91721 1.16958 0.89357 0.90503 0.85640 1.42500 1.10191 1.80876 1.05127 1.20181 0.89496 1.16522 0.88876 1.98368 1.74863 1.97321 1.32087 1.20944 1.00789 0.93389 0.89219 1.20699 0.90952 1.07326 0.99180 1.20674 0.92498 0.97809 0.86151 1.98436 1.76803 1.96115 1.29653 0.92165 0.95422 0.95840 0.76692 0.87973 0.88129 0.76379 0.75740 0.83239 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.55 -14.63 9.83 -34.44 -0.34 -14.96 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.31 4.50 -5.20 -0.02 5.29 16 10 N -0.70 -13.54 5.55 -61.47 -0.34 -13.88 16 11 C 0.50 9.35 7.91 -10.99 -0.09 9.26 16 12 O -0.53 -12.12 16.50 -14.11 -0.23 -12.35 16 13 C 0.04 0.63 5.95 36.01 0.21 0.85 16 14 O -0.32 -4.79 9.77 -47.37 -0.46 -5.26 16 15 C 0.52 7.05 5.19 34.38 0.18 7.23 16 16 O -0.48 -7.15 16.90 -19.29 -0.33 -7.47 16 17 C -0.17 -2.05 5.77 -104.80 -0.60 -2.66 16 18 C 0.29 2.85 6.76 -83.55 -0.57 2.29 16 19 N -0.85 -7.17 8.94 32.57 0.29 -6.88 16 20 C -0.12 -0.99 6.33 -39.35 -0.25 -1.24 16 21 Cl -0.06 -0.39 27.58 -51.86 -1.43 -1.82 16 22 C -0.02 -0.16 9.80 -39.52 -0.39 -0.55 16 23 C -0.16 -1.22 9.80 -39.59 -0.39 -1.60 16 24 C 0.06 0.60 6.35 -39.07 -0.25 0.35 16 25 Cl -0.04 -0.44 28.04 -51.86 -1.45 -1.89 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 28 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 29 H 0.40 6.63 8.32 -40.82 -0.34 6.29 16 30 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.41 3.49 7.68 -40.82 -0.31 3.18 16 33 H 0.41 2.70 7.49 -40.82 -0.31 2.39 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -33.50 345.93 -8.23 -41.73 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.99 Total: 5.14 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -2.60 Total: 6.34 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.72 Total: -46.02 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.02 Total: -25.08 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -2.88 Total: -3.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.50 -8.23 -41.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785618896.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.992 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds