Wall clock time and date at job start Sat Apr 11 2020 07:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99749 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00165 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99926 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00033 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34774 * 116.99772 * 180.02562 * 14 13 11 16 16 O 1.21530 * 120.00480 * 359.97438 * 15 14 13 17 17 C 1.47223 * 119.99800 * 180.02562 * 15 14 13 18 18 C 1.40426 * 120.21765 * 89.72296 * 17 15 14 19 19 N 1.38905 * 120.17922 * 0.02562 * 18 17 15 20 20 C 1.38990 * 119.64114 * 179.77237 * 18 17 15 21 21 Cl 1.73604 * 119.95384 * 180.24837 * 20 18 17 22 22 C 1.38109 * 120.08705 * 0.50225 * 20 18 17 23 23 C 1.38522 * 120.44479 * 359.74843 * 22 20 18 24 24 C 1.37932 * 120.35673 * 359.97438 * 23 22 20 25 25 Cl 1.73603 * 120.04723 * 179.97438 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47718 * 59.99471 * 9 7 2 28 28 H 1.09004 * 109.47331 * 299.99598 * 9 7 2 29 29 H 0.97004 * 120.00363 * 359.97438 * 10 9 7 30 30 H 1.09004 * 109.47103 * 60.00241 * 13 11 10 31 31 H 1.09000 * 109.47247 * 300.00119 * 13 11 10 32 32 H 0.96999 * 119.99802 * 0.02562 * 19 18 17 33 33 H 0.97000 * 119.99650 * 180.02562 * 19 18 17 34 34 H 1.07994 * 119.77389 * 179.72340 * 22 20 18 35 35 H 1.08002 * 119.82344 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 5.3248 -2.8218 0.0024 12 8 6.1130 -1.9000 0.0021 13 6 5.8271 -4.2426 0.0041 14 8 7.2791 -4.2427 0.0046 15 6 7.8909 -5.4436 0.0055 16 8 7.2290 -6.4628 0.0065 17 6 9.3611 -5.5207 0.0066 18 6 10.0663 -5.5513 1.2206 19 7 9.3805 -5.5095 2.4278 20 6 11.4540 -5.6290 1.2076 21 17 12.3336 -5.6738 2.7036 22 6 12.1342 -5.6652 0.0062 23 6 11.4425 -5.6299 -1.1934 24 6 10.0650 -5.5586 -1.2020 25 17 9.2063 -5.5141 -2.7100 26 1 -0.4850 0.8401 -0.0004 27 1 3.8746 -0.6801 0.8910 28 1 3.8752 -0.6806 -0.8889 29 1 3.3694 -3.3127 0.0029 30 1 5.4636 -4.7575 -0.8852 31 1 5.4638 -4.7553 0.8948 32 1 8.4118 -5.4594 2.4338 33 1 9.8703 -5.5304 3.2648 34 1 13.2127 -5.7211 0.0021 35 1 11.9846 -5.6584 -2.1271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785618896.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:36 Heat of formation + Delta-G solvation = -129.549674 kcal Electronic energy + Delta-G solvation = -24432.857074 eV Core-core repulsion = 20288.762446 eV Total energy + Delta-G solvation = -4144.094627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.032 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.08769 -40.77757 -40.10136 -38.03842 -37.65423 -37.35579 -36.22283 -35.87725 -34.47715 -32.47270 -31.08798 -30.07441 -28.86157 -25.73367 -24.10844 -23.67973 -22.32544 -21.76303 -19.73913 -19.23280 -18.88206 -18.65585 -18.29815 -17.59840 -17.46414 -16.96252 -16.37602 -16.25928 -16.04327 -15.83233 -15.69706 -15.31349 -14.89176 -14.58938 -14.38955 -14.00987 -13.80978 -13.66724 -13.47914 -13.26993 -13.09681 -12.72191 -12.66596 -12.34547 -12.18134 -12.02122 -11.94337 -11.85868 -11.67740 -11.64879 -11.01540 -10.93204 -10.06262 -10.02928 -8.93302 -8.40815 -6.48347 -0.43573 0.07829 0.62946 0.75474 0.94181 1.24279 1.33078 1.36248 1.46632 1.48966 2.22094 2.27418 2.39882 2.46482 2.94642 3.35709 3.57120 3.66141 3.83779 3.94992 3.99307 4.09654 4.17812 4.42241 4.73002 4.86615 4.90925 4.99255 5.01141 5.22499 5.30212 5.37723 5.92197 6.04193 6.30219 6.39336 6.51475 6.69158 7.10022 7.25344 8.73702 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002355 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.067160 B =11886.643474 C =12558.329758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.232 3.768 10 N -0.696 5.696 11 C 0.506 3.494 12 O -0.576 6.576 13 C 0.052 3.948 14 O -0.334 6.334 15 C 0.525 3.475 16 O -0.501 6.501 17 C -0.205 4.205 18 C 0.278 3.722 19 N -0.847 5.847 20 C -0.124 4.124 21 Cl -0.044 7.044 22 C -0.010 4.010 23 C -0.152 4.152 24 C 0.041 3.959 25 Cl -0.054 7.054 26 H 0.273 0.727 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.413 0.587 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.405 0.595 33 H 0.418 0.582 34 H 0.185 0.815 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.173 -15.844 1.845 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.109 3.891 10 N -0.347 5.347 11 C 0.291 3.709 12 O -0.455 6.455 13 C -0.025 4.025 14 O -0.249 6.249 15 C 0.368 3.632 16 O -0.389 6.389 17 C -0.213 4.213 18 C 0.166 3.834 19 N -0.385 5.385 20 C -0.156 4.156 21 Cl -0.015 7.015 22 C -0.029 4.029 23 C -0.172 4.172 24 C 0.013 3.987 25 Cl -0.025 7.025 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.250 0.750 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.234 0.766 33 H 0.251 0.749 34 H 0.202 0.798 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 28.301 -15.355 1.879 32.253 hybrid contribution -1.146 0.525 0.292 1.294 sum 27.154 -14.830 2.171 31.016 Atomic orbital electron populations 1.69979 1.07703 1.28652 1.50534 1.25588 0.95528 1.02665 0.93572 0.85876 0.79325 0.79349 0.79477 1.19032 1.19896 1.18252 1.21264 0.89767 0.94711 1.52808 0.91990 1.19175 0.93467 0.80268 0.96165 1.45847 1.05772 1.10388 1.72704 1.20488 0.82772 0.90829 0.76781 1.90694 1.56169 1.47440 1.51243 1.22877 0.77671 0.94405 1.07554 1.86762 1.22161 1.32705 1.83254 1.21017 0.89015 0.81158 0.72005 1.90885 1.66784 1.36229 1.44956 1.18113 0.88802 1.21387 0.93008 1.17096 0.90144 0.90712 0.85417 1.42516 1.10169 1.80606 1.05221 1.20372 0.89063 1.16137 0.89994 1.98376 1.74364 1.97248 1.31513 1.21375 1.02391 0.91039 0.88134 1.21054 0.89788 1.05669 1.00725 1.20904 0.93524 0.99064 0.85213 1.98425 1.77372 1.96290 1.30430 0.91814 0.96399 0.96665 0.75041 0.85913 0.85115 0.76620 0.74856 0.79796 0.80519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.96 21.45 0.30 -54.57 16 2 C 0.03 1.50 5.47 84.66 0.46 1.97 16 3 Si 0.94 43.32 27.47 68.60 1.88 45.21 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -11.79 6.54 99.48 0.65 -11.13 16 7 C -0.55 -29.52 9.83 25.60 0.25 -29.27 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 9 C 0.23 11.08 4.50 85.63 0.38 11.46 16 10 N -0.70 -26.60 5.55 -466.79 -2.59 -29.19 16 11 C 0.51 18.50 7.91 87.66 0.69 19.19 16 12 O -0.58 -26.12 16.50 15.76 0.26 -25.86 16 13 C 0.05 1.39 5.95 71.24 0.42 1.82 16 14 O -0.33 -9.92 9.77 -50.46 -0.49 -10.41 16 15 C 0.53 14.01 5.19 70.18 0.36 14.37 16 16 O -0.50 -14.45 16.90 19.74 0.33 -14.11 16 17 C -0.21 -4.67 5.77 -19.98 -0.12 -4.79 16 18 C 0.28 5.20 6.76 38.73 0.26 5.46 16 19 N -0.85 -13.56 8.94 -50.85 -0.45 -14.02 16 20 C -0.12 -1.78 6.33 22.42 0.14 -1.64 16 21 Cl -0.04 -0.52 27.58 -2.72 -0.08 -0.60 16 22 C -0.01 -0.11 9.80 22.31 0.22 0.11 16 23 C -0.15 -1.91 9.80 22.26 0.22 -1.69 16 24 C 0.04 0.81 6.35 22.60 0.14 0.95 16 25 Cl -0.05 -1.18 28.04 -2.72 -0.08 -1.26 16 26 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 27 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 28 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 29 H 0.41 13.42 8.32 -92.71 -0.77 12.65 16 30 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.40 6.74 7.68 -92.71 -0.71 6.03 16 33 H 0.42 5.05 7.49 -92.71 -0.69 4.35 16 34 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -72.51 345.93 1.51 -71.00 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -1.03 Total: 15.84 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 3.45 Total: 17.96 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -2.75 Total: -97.77 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: 0.10 Total: -50.38 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.15 Total: -1.85 kcal Total: -72.51 1.51 -71.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785618896.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.551 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds