Wall clock time and date at job start Sat Apr 11 2020 07:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86793 * 119.99907 * 2 1 4 4 H 1.48509 * 109.47452 * 269.99743 * 3 2 1 5 5 H 1.48502 * 109.47156 * 29.99894 * 3 2 1 6 6 H 1.48498 * 109.47135 * 149.99951 * 3 2 1 7 7 C 1.38946 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00313 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00054 * 180.02562 * 7 2 1 10 10 C 1.34767 * 120.00180 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00419 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99930 * 179.97438 * 10 9 7 13 13 N 1.46508 * 109.47193 * 180.02562 * 12 10 9 14 14 S 1.65595 * 119.99876 * 165.00215 * 13 12 10 15 15 O 1.42105 * 106.40149 * 178.54167 * 14 13 12 16 16 O 1.42098 * 106.40317 * 311.46040 * 14 13 12 17 17 C 1.76204 * 107.21987 * 65.00402 * 14 13 12 18 18 C 1.37835 * 119.94023 * 114.72369 * 17 14 13 19 19 C 1.39684 * 119.87316 * 179.72804 * 18 17 14 20 20 C 1.47594 * 120.12321 * 180.27014 * 19 18 17 21 21 O 1.21485 * 120.00348 * 0.27566 * 20 19 18 22 22 O 1.34733 * 120.00181 * 180.27208 * 20 19 18 23 23 C 1.39733 * 119.75509 * 0.54264 * 19 18 17 24 24 C 1.37792 * 119.87020 * 359.72895 * 23 19 18 25 25 C 1.38644 * 119.93228 * 294.99655 * 17 14 13 26 26 F 1.35103 * 119.88311 * 0.02562 * 25 17 14 27 27 H 0.97006 * 120.00028 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99734 * 0.02562 * 9 7 2 29 29 H 1.09006 * 109.47277 * 60.00539 * 12 10 9 30 30 H 1.08993 * 109.47815 * 300.00335 * 12 10 9 31 31 H 0.96997 * 120.00091 * 345.00187 * 13 12 10 32 32 H 1.07994 * 120.06495 * 359.97438 * 18 17 14 33 33 H 0.96701 * 117.00434 * 179.97438 * 22 20 19 34 34 H 1.08001 * 120.06296 * 179.70366 * 23 19 18 35 35 H 1.08000 * 119.93667 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3705 0.0000 11 8 3.4473 -3.4209 -0.0009 12 6 5.5606 -2.3705 0.0000 13 7 6.0490 -3.7518 -0.0006 14 16 7.6310 -4.0705 -0.3719 15 8 7.7958 -5.4769 -0.2526 16 8 7.9156 -3.3531 -1.5650 17 6 8.6201 -3.3447 0.8930 18 6 9.3669 -4.1476 1.7280 19 6 10.1549 -3.5705 2.7266 20 6 10.9615 -4.4247 3.6200 21 8 10.9448 -5.6318 3.4845 22 8 11.7164 -3.8657 4.5859 23 6 10.1723 -2.1817 2.8803 24 6 9.4173 -1.3891 2.0433 25 6 8.6411 -1.9673 1.0499 26 9 7.9024 -1.1853 0.2325 27 1 -0.4850 0.8401 -0.0004 28 1 3.8648 -0.3633 0.0011 29 1 5.9240 -1.8567 0.8901 30 1 5.9241 -1.8567 -0.8899 31 1 5.4457 -4.4796 0.2164 32 1 9.3461 -5.2207 1.6080 33 1 12.2270 -4.4658 5.1465 34 1 10.7761 -1.7305 3.6538 35 1 9.4297 -0.3157 2.1614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794837360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:47 Heat of formation + Delta-G solvation = -201.824534 kcal Electronic energy + Delta-G solvation = -27785.670136 eV Core-core repulsion = 23212.148766 eV Total energy + Delta-G solvation = -4573.521369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.056 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.84338 -40.95082 -39.09513 -38.68375 -37.35506 -36.61802 -36.02225 -34.84944 -33.85461 -32.23494 -31.81426 -31.67588 -27.47252 -25.30276 -24.32439 -24.19628 -22.15996 -19.96204 -19.73928 -18.98509 -18.76495 -18.56955 -17.88636 -17.64876 -17.04338 -16.67110 -16.35849 -16.13644 -15.86884 -15.58217 -15.08536 -14.87268 -14.70970 -14.56353 -14.33914 -14.06594 -13.51427 -13.27755 -13.14627 -12.67422 -12.53611 -12.49227 -12.46545 -12.24283 -12.14647 -12.08581 -11.87250 -11.38369 -11.27534 -11.15608 -10.67764 -10.26599 -10.08093 -9.73877 -9.65622 -9.58847 -8.77455 -8.32509 -6.42137 -3.94888 -0.28041 0.09736 0.27252 1.74337 2.36657 2.68818 2.90076 2.95125 3.01159 3.09627 3.27536 3.46078 3.53408 3.84411 4.01060 4.12797 4.23980 4.30063 4.43633 4.67015 4.88053 5.09163 5.09964 5.11977 5.16614 5.27963 5.37307 5.50212 5.61658 5.89809 5.91074 5.92037 7.05546 7.31819 7.43083 7.99577 8.43426 8.80570 9.27768 9.61714 10.70118 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.003084 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.526457 B = 9077.158234 C = 9817.173680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.578 5.578 10 C 0.444 3.556 11 O -0.570 6.570 12 C 0.099 3.901 13 N -1.091 6.091 14 S 2.701 3.299 15 O -0.946 6.946 16 O -0.940 6.940 17 C -0.726 4.726 18 C 0.073 3.927 19 C -0.162 4.162 20 C 0.531 3.469 21 O -0.503 6.503 22 O -0.512 6.512 23 C 0.018 3.982 24 C -0.181 4.181 25 C 0.231 3.769 26 F -0.108 7.108 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.432 0.568 32 H 0.170 0.830 33 H 0.419 0.581 34 H 0.158 0.842 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.995 -0.208 8.213 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.216 5.216 10 C 0.229 3.771 11 O -0.453 6.453 12 C -0.031 4.031 13 N -0.857 5.857 14 S 2.785 3.215 15 O -0.936 6.936 16 O -0.930 6.930 17 C -0.810 4.810 18 C 0.054 3.946 19 C -0.164 4.164 20 C 0.375 3.625 21 O -0.392 6.392 22 O -0.324 6.324 23 C -0.001 4.001 24 C -0.201 4.201 25 C 0.210 3.790 26 F -0.085 7.085 27 H 0.086 0.914 28 H 0.207 0.793 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.272 0.728 32 H 0.187 0.813 33 H 0.279 0.721 34 H 0.176 0.824 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 24.534 -1.114 7.162 25.582 hybrid contribution 0.641 1.393 1.081 1.876 sum 25.175 0.280 8.243 26.492 Atomic orbital electron populations 1.69619 1.05712 1.27794 1.48183 1.25065 0.95527 0.98142 0.97202 0.86680 0.79801 0.83831 0.79191 1.19302 1.20016 1.19315 1.19451 0.78914 0.96840 1.48624 0.86028 1.42138 1.07735 1.06045 1.65709 1.19439 0.87639 0.84925 0.85145 1.90555 1.68780 1.30906 1.55063 1.21208 0.96552 0.82269 1.03067 1.55081 1.27376 1.15161 1.88084 1.01950 0.72345 0.73472 0.73725 1.93617 1.85334 1.28144 1.86542 1.93638 1.83908 1.74388 1.41060 1.31313 1.22536 1.01993 1.25156 1.20967 0.85754 1.01309 0.86598 1.19140 1.03675 0.93574 0.99989 1.20520 0.77130 0.86233 0.78641 1.90958 1.62825 1.15538 1.69838 1.84512 1.57667 1.45719 1.44533 1.21634 0.91930 0.91768 0.94733 1.21306 0.99703 1.02393 0.96655 1.17425 0.87690 0.86770 0.87085 1.91678 1.73068 1.73982 1.69820 0.91380 0.79314 0.90345 0.88057 0.72778 0.81251 0.72134 0.82396 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.69 13.96 55.50 0.77 -23.92 16 2 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 3 Si 0.88 18.45 27.74 -169.99 -4.71 13.73 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.01 6.52 56.52 0.37 -4.64 16 7 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.09 5.09 -10.97 -0.06 -13.14 16 10 C 0.44 9.55 7.85 -10.99 -0.09 9.46 16 11 O -0.57 -14.38 15.30 5.55 0.08 -14.30 16 12 C 0.10 1.57 5.04 -5.19 -0.03 1.54 16 13 N -1.09 -16.18 5.93 -11.65 -0.07 -16.25 16 14 S 2.70 36.78 5.48 -107.50 -0.59 36.19 16 15 O -0.95 -14.37 16.96 -57.17 -0.97 -15.34 16 16 O -0.94 -14.93 16.89 -57.17 -0.97 -15.90 16 17 C -0.73 -8.05 5.89 -39.58 -0.23 -8.28 16 18 C 0.07 0.75 9.09 -39.19 -0.36 0.39 16 19 C -0.16 -1.38 5.87 -104.98 -0.62 -2.00 16 20 C 0.53 4.48 8.27 34.55 0.29 4.76 16 21 O -0.50 -5.86 17.13 -19.25 -0.33 -6.19 16 22 O -0.51 -2.50 12.68 -40.58 -0.51 -3.01 16 23 C 0.02 0.11 9.61 -39.19 -0.38 -0.27 16 24 C -0.18 -1.27 10.01 -39.57 -0.40 -1.67 16 25 C 0.23 2.31 6.81 -39.26 -0.27 2.04 16 26 F -0.11 -1.17 12.89 2.25 0.03 -1.15 16 27 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.37 7.30 5.76 -40.82 -0.24 7.07 16 29 H 0.08 1.00 6.74 -51.93 -0.35 0.65 16 30 H 0.10 1.46 7.24 -51.93 -0.38 1.08 16 31 H 0.43 6.64 7.70 -34.47 -0.27 6.37 16 32 H 0.17 1.75 6.91 -52.49 -0.36 1.39 16 33 H 0.42 0.29 9.11 45.56 0.42 0.71 16 34 H 0.16 0.54 7.61 -52.49 -0.40 0.14 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -36.87 329.69 -6.22 -43.09 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -1.55 Total: 12.71 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.32 Total: -1.49 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.65 Total: -53.32 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -2.69 Total: -54.73 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.03 Total: -1.15 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.71 Total: 13.73 kcal Atomic # 16 Polarization: 36.78 SS G_CDS: -0.59 Total: 36.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.87 -6.22 -43.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794837360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.736 kcal (2) G-P(sol) polarization free energy of solvation -36.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds