Wall clock time and date at job start Sat Apr 11 2020 07:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00438 * 2 1 4 4 H 1.48498 * 109.47333 * 270.00208 * 3 2 1 5 5 H 1.48502 * 109.47086 * 30.00115 * 3 2 1 6 6 H 1.48499 * 109.47415 * 150.00016 * 3 2 1 7 7 C 1.38954 * 119.99328 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99592 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00494 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00345 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99858 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00195 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46838 * 180.02562 * 12 10 9 14 14 S 1.65600 * 119.99529 * 164.99736 * 13 12 10 15 15 O 1.42100 * 106.40858 * 311.46065 * 14 13 12 16 16 O 1.42101 * 106.40259 * 178.53620 * 14 13 12 17 17 C 1.76202 * 107.22066 * 65.00163 * 14 13 12 18 18 C 1.38472 * 119.89258 * 89.99458 * 17 14 13 19 19 C 1.38201 * 120.35435 * 180.02562 * 18 17 14 20 20 C 1.38311 * 120.12273 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.11280 * 179.97438 * 20 19 18 22 22 C 1.39880 * 119.77158 * 359.97367 * 20 19 18 23 23 C 1.47566 * 120.17156 * 180.02562 * 22 20 19 24 24 O 1.21494 * 119.99913 * 359.72747 * 23 22 20 25 25 O 1.34732 * 120.00189 * 179.97438 * 23 22 20 26 26 C 1.37845 * 119.88367 * 270.23677 * 17 14 13 27 27 H 0.97007 * 119.99526 * 359.97438 * 1 2 3 28 28 H 0.97007 * 119.99611 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47421 * 59.99716 * 12 10 9 30 30 H 1.08996 * 109.46593 * 299.99987 * 12 10 9 31 31 H 0.96998 * 120.00429 * 344.99300 * 13 12 10 32 32 H 1.08005 * 119.81861 * 359.97438 * 18 17 14 33 33 H 1.08005 * 119.93652 * 179.97438 * 19 18 17 34 34 H 0.96692 * 117.00096 * 180.02562 * 25 23 22 35 35 H 1.07996 * 120.06882 * 0.03563 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5580 0.0016 11 8 3.2099 -3.5580 0.0011 12 6 1.2434 -4.8630 0.0022 13 7 2.1954 -5.9765 0.0027 14 16 1.6804 -7.5058 0.3746 15 8 0.9174 -7.3933 1.5681 16 8 2.8159 -8.3518 0.2550 17 6 0.5567 -7.9997 -0.8895 18 6 1.0285 -8.6535 -2.0153 19 6 0.1557 -9.0447 -3.0129 20 6 -1.1974 -8.7845 -2.8928 21 9 -2.0503 -9.1665 -3.8683 22 6 -1.6796 -8.1244 -1.7577 23 6 -3.1216 -7.8427 -1.6201 24 8 -3.8927 -8.1800 -2.4964 25 8 -3.5824 -7.2072 -0.5252 26 6 -0.7884 -7.7295 -0.7567 27 1 -0.4850 0.8401 0.0004 28 1 0.3531 -2.3906 0.0016 29 1 0.6163 -4.9209 -0.8875 30 1 0.6171 -4.9204 0.8924 31 1 3.1273 -5.8181 -0.2149 32 1 2.0843 -8.8581 -2.1146 33 1 0.5311 -9.5539 -3.8883 34 1 -4.5346 -7.0452 -0.4798 35 1 -1.1531 -7.2155 0.1203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794838813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:50 Heat of formation + Delta-G solvation = -242.864591 kcal Electronic energy + Delta-G solvation = -27499.693094 eV Core-core repulsion = 22924.392094 eV Total energy + Delta-G solvation = -4575.301000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.056 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.36004 -41.48411 -40.22572 -39.85740 -38.41962 -37.21257 -37.03443 -36.30876 -35.36131 -33.29419 -32.96664 -32.22769 -28.74516 -26.22004 -26.10604 -24.57552 -23.08572 -21.38470 -20.62340 -20.02865 -19.56859 -19.19088 -18.98826 -18.44241 -17.78924 -17.41456 -17.33392 -17.19232 -17.14510 -16.45170 -16.41093 -16.05827 -15.90690 -15.54329 -15.30595 -14.73630 -14.62574 -14.33146 -14.16137 -14.01881 -13.75468 -13.56847 -13.32375 -13.23082 -13.11896 -12.92515 -12.89792 -12.70609 -12.40442 -12.27309 -12.10940 -11.82652 -11.52212 -10.72840 -10.62307 -10.50035 -10.40113 -10.02977 -8.46895 -5.95521 -0.96729 -0.73290 -0.43884 1.13316 1.39230 1.45622 1.56988 1.78269 1.81679 1.99175 2.14086 2.31940 2.63833 2.69771 3.02685 3.18593 3.21210 3.38829 3.67106 3.80940 3.97466 4.05510 4.16137 4.43102 4.47154 4.51719 4.53012 4.68254 4.72216 4.78168 5.31163 5.41868 5.43155 5.91656 6.03058 6.56028 6.80553 7.10711 7.52173 8.04683 8.69784 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.003170 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.059469 B = 8832.044210 C =10249.970185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.083 0.917 9 N -0.563 5.563 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.109 3.891 13 N -1.099 6.099 14 S 2.726 3.274 15 O -0.973 6.973 16 O -0.969 6.969 17 C -0.704 4.704 18 C 0.051 3.949 19 C -0.171 4.171 20 C 0.204 3.796 21 F -0.116 7.116 22 C -0.201 4.201 23 C 0.533 3.467 24 O -0.536 6.536 25 O -0.498 6.498 26 C 0.067 3.933 27 H 0.278 0.722 28 H 0.401 0.599 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.427 0.573 32 H 0.185 0.815 33 H 0.190 0.810 34 H 0.439 0.561 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 -17.502 -4.474 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.208 4.208 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.101 0.899 9 N -0.200 5.200 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.020 4.020 13 N -0.862 5.862 14 S 2.815 3.185 15 O -0.963 6.963 16 O -0.959 6.959 17 C -0.792 4.792 18 C 0.032 3.968 19 C -0.190 4.190 20 C 0.184 3.816 21 F -0.094 7.094 22 C -0.204 4.204 23 C 0.378 3.622 24 O -0.428 6.428 25 O -0.312 6.312 26 C 0.047 3.953 27 H 0.088 0.912 28 H 0.235 0.765 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.266 0.734 32 H 0.202 0.798 33 H 0.207 0.793 34 H 0.302 0.698 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.489 -18.008 -3.983 18.982 hybrid contribution -1.157 1.137 -0.896 1.853 sum -5.646 -16.872 -4.879 18.448 Atomic orbital electron populations 1.69657 1.06770 1.29424 1.49661 1.25995 0.96478 1.02321 0.96048 0.84960 0.77965 0.77044 0.78597 1.19697 1.19802 1.19740 1.19689 0.92880 0.83795 1.50141 0.89911 1.41861 1.09628 1.04555 1.63939 1.20571 0.88253 0.86038 0.83090 1.90493 1.15578 1.87515 1.57573 1.21024 0.91185 0.84158 1.05682 1.55114 1.20049 1.22559 1.88495 1.00890 0.72762 0.71392 0.73435 1.93581 1.72944 1.86108 1.43664 1.93580 1.50050 1.65158 1.87124 1.30996 1.10278 1.18315 1.19583 1.21469 1.02395 0.85270 0.87643 1.21602 0.89348 1.04772 1.03305 1.18261 0.88683 0.91053 0.83628 1.91625 1.70334 1.87522 1.59916 1.19263 0.91637 1.10945 0.98546 1.20459 0.88443 0.73992 0.79326 1.90957 1.58756 1.51039 1.42003 1.84510 1.35076 1.70414 1.41210 1.21326 0.90145 0.87851 0.95955 0.91205 0.76476 0.86561 0.86477 0.73427 0.79770 0.79274 0.69760 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.62 13.05 21.66 0.28 -46.34 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 3 Si 0.99 40.80 29.55 68.60 2.03 42.83 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.34 -17.80 9.68 84.04 0.81 -16.99 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.56 -26.31 5.29 -306.98 -1.62 -27.94 16 10 C 0.43 18.33 7.85 87.66 0.69 19.02 16 11 O -0.62 -30.90 15.30 -3.08 -0.05 -30.95 16 12 C 0.11 3.09 6.70 85.63 0.57 3.66 16 13 N -1.10 -28.24 5.93 -190.80 -1.13 -29.38 16 14 S 2.73 60.97 5.73 -56.49 -0.32 60.65 16 15 O -0.97 -26.57 16.74 -128.00 -2.14 -28.71 16 16 O -0.97 -24.90 17.27 -128.00 -2.21 -27.11 16 17 C -0.70 -12.27 5.94 22.23 0.13 -12.14 16 18 C 0.05 0.69 9.51 22.32 0.21 0.90 16 19 C -0.17 -2.17 10.01 22.28 0.22 -1.95 16 20 C 0.20 3.78 7.29 22.68 0.17 3.94 16 21 F -0.12 -2.56 15.55 44.97 0.70 -1.86 16 22 C -0.20 -3.95 5.88 -20.06 -0.12 -4.06 16 23 C 0.53 11.19 8.27 70.28 0.58 11.77 16 24 O -0.54 -14.44 16.13 19.86 0.32 -14.12 16 25 O -0.50 -7.36 12.68 -56.42 -0.72 -8.08 16 26 C 0.07 1.19 9.08 22.53 0.20 1.39 16 27 H 0.28 13.35 8.31 -92.70 -0.77 12.58 16 28 H 0.40 17.49 7.90 -92.70 -0.73 16.76 16 29 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.12 2.90 7.75 -2.39 -0.02 2.88 16 31 H 0.43 11.83 7.70 -96.75 -0.75 11.08 16 32 H 0.19 1.61 7.60 -2.91 -0.02 1.59 16 33 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.44 2.57 9.11 -74.06 -0.67 1.90 16 35 H 0.18 2.79 7.16 -2.91 -0.02 2.76 16 Total: -1.00 -76.56 339.16 -1.85 -78.41 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.93 Total: 26.98 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 3.94 Total: 5.62 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -2.47 Total: -103.65 kcal Atomic # 8 Polarization: -104.18 SS G_CDS: -4.80 Total: -108.98 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.70 Total: -1.86 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 60.97 SS G_CDS: -0.32 Total: 60.65 kcal Total: -76.56 -1.85 -78.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794838813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.454 kcal (2) G-P(sol) polarization free energy of solvation -76.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds