Wall clock time and date at job start Sat Apr 11 2020 07:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99866 * 3 2 1 5 5 H 1.48494 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46882 * 120.00085 * 3 2 1 7 7 C 1.38946 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99864 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00074 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99900 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47282 * 180.02562 * 12 10 9 14 14 S 1.65599 * 120.00418 * 165.00028 * 13 12 10 15 15 O 1.42100 * 106.40241 * 311.46108 * 14 13 12 16 16 O 1.42096 * 106.40379 * 178.53729 * 14 13 12 17 17 C 1.76199 * 107.21658 * 65.00023 * 14 13 12 18 18 C 1.38238 * 120.00251 * 269.72679 * 17 14 13 19 19 C 1.38228 * 120.00121 * 179.76592 * 18 17 14 20 20 C 1.38234 * 120.00032 * 0.48826 * 19 18 17 21 21 C 1.50706 * 120.00191 * 179.77047 * 20 19 18 22 22 C 1.53000 * 109.46736 * 270.02352 * 21 20 19 23 23 Cl 1.80299 * 109.46893 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.99845 * 359.78460 * 20 19 18 25 25 C 1.38234 * 120.00019 * 90.00010 * 17 14 13 26 26 H 0.96995 * 119.99484 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00682 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.47433 * 60.00684 * 12 10 9 29 29 H 1.08996 * 109.47407 * 300.00086 * 12 10 9 30 30 H 0.97001 * 119.99713 * 345.00235 * 13 12 10 31 31 H 1.08004 * 119.99572 * 0.02562 * 18 17 14 32 32 H 1.08004 * 120.00400 * 180.25458 * 19 18 17 33 33 H 1.09000 * 109.47114 * 30.01506 * 21 20 19 34 34 H 1.08992 * 109.47323 * 150.02185 * 21 20 19 35 35 H 1.09004 * 109.47064 * 299.99612 * 22 21 20 36 36 H 1.08997 * 109.47789 * 59.99684 * 22 21 20 37 37 H 1.08005 * 119.99901 * 179.97438 * 24 20 19 38 38 H 1.07999 * 120.00005 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1020 1.6964 -1.2126 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 16 1.6805 -7.5060 0.3704 15 8 0.9166 -7.3940 1.5633 16 8 2.8161 -8.3518 0.2512 17 6 0.5579 -7.9993 -0.8949 18 6 -0.7931 -7.7391 -0.7603 19 6 -1.6731 -8.1217 -1.7552 20 6 -1.2036 -8.7736 -2.8801 21 6 -2.1638 -9.1954 -3.9624 22 6 -2.6738 -10.6079 -3.6695 23 17 -3.8220 -11.1129 -4.9647 24 6 0.1465 -9.0388 -3.0121 25 6 1.0274 -8.6515 -2.0197 26 1 -0.4849 0.8400 -0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.6174 -4.9205 -0.8914 29 1 0.6167 -4.9209 0.8886 30 1 3.1278 -5.8178 -0.2171 31 1 -1.1604 -7.2330 0.1203 32 1 -2.7281 -7.9148 -1.6519 33 1 -3.0058 -8.5038 -3.9909 34 1 -1.6530 -9.1860 -4.9252 35 1 -1.8319 -11.2996 -3.6409 36 1 -3.1846 -10.6174 -2.7067 37 1 0.5133 -9.5485 -3.8909 38 1 2.0822 -8.8591 -2.1227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796216263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:54 Heat of formation + Delta-G solvation = -106.421401 kcal Electronic energy + Delta-G solvation = -24794.072657 eV Core-core repulsion = 20788.857748 eV Total energy + Delta-G solvation = -4005.214909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81926 -38.47393 -37.21261 -36.62486 -35.84076 -34.71212 -34.37194 -33.73680 -31.40201 -31.38247 -29.81056 -27.20172 -24.66972 -24.37184 -23.23609 -21.74625 -19.73467 -19.51711 -18.20455 -18.15738 -17.44135 -16.45607 -16.20719 -15.82595 -15.56003 -15.00307 -14.90971 -14.73349 -14.51250 -14.47873 -14.31787 -13.84062 -13.74790 -13.63773 -12.98137 -12.54678 -12.36291 -12.30801 -12.18892 -12.07611 -11.99429 -11.93214 -11.57308 -11.49003 -11.16111 -11.11993 -10.85887 -10.83940 -10.52044 -10.32370 -9.65398 -9.56112 -9.42693 -9.36149 -8.63779 -8.12026 -6.53673 -3.95403 0.26402 0.54372 0.97573 1.76532 2.90495 3.12577 3.20400 3.21783 3.25682 3.69457 3.78143 4.07592 4.15415 4.22068 4.28142 4.34562 4.56701 4.58267 4.79193 4.81085 4.96479 4.98829 5.13317 5.26354 5.28471 5.38983 5.44767 5.61137 5.71315 5.76835 5.78644 5.81438 6.04220 6.23496 6.48507 7.20458 7.44430 7.91038 8.43728 9.03297 9.36848 9.85482 10.63262 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.002390 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.374639 B =11712.459491 C =13355.409191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.434 3.566 11 O -0.589 6.589 12 C 0.106 3.894 13 N -1.096 6.096 14 S 2.700 3.300 15 O -0.957 6.957 16 O -0.960 6.960 17 C -0.675 4.675 18 C -0.016 4.016 19 C -0.134 4.134 20 C -0.038 4.038 21 C -0.097 4.097 22 C -0.027 4.027 23 Cl -0.183 7.183 24 C -0.136 4.136 25 C -0.014 4.014 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.428 0.572 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 -19.431 -7.540 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.218 3.782 11 O -0.475 6.475 12 C -0.025 4.025 13 N -0.860 5.860 14 S 2.788 3.212 15 O -0.947 6.947 16 O -0.951 6.951 17 C -0.761 4.761 18 C -0.036 4.036 19 C -0.153 4.153 20 C -0.039 4.039 21 C -0.134 4.134 22 C -0.090 4.090 23 Cl -0.157 7.157 24 C -0.155 4.155 25 C -0.033 4.033 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.267 0.733 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.151 0.849 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.200 -19.804 -6.880 22.167 hybrid contribution -0.353 1.027 -0.852 1.380 sum -7.553 -18.778 -7.732 21.666 Atomic orbital electron populations 1.69600 1.05985 1.28608 1.49502 1.25310 0.95676 0.99901 0.96808 0.85874 0.78782 0.80146 0.79184 1.19806 1.20876 1.19753 1.19684 0.93464 0.82006 1.48232 0.87719 1.41805 1.09389 1.04492 1.63033 1.19588 0.88344 0.84650 0.85572 1.90512 1.13656 1.86572 1.56726 1.20956 0.91409 0.87340 1.02773 1.55086 1.20128 1.22495 1.88321 1.01704 0.73330 0.72229 0.73954 1.93588 1.72580 1.86012 1.42485 1.93583 1.49402 1.65088 1.86980 1.31144 1.11153 1.15481 1.18320 1.21021 0.91133 0.93364 0.98047 1.21212 1.00393 0.99957 0.93754 1.20017 0.94177 0.95009 0.94663 1.21009 0.98992 0.95537 0.97904 1.24358 0.94936 0.97319 0.92393 1.98735 1.66498 1.92592 1.57877 1.21188 0.92740 1.01794 0.99790 1.20953 1.00567 0.91234 0.90594 0.91567 0.77119 0.90256 0.88668 0.73268 0.83733 0.84774 0.89027 0.89129 0.88541 0.88476 0.84935 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.32 13.05 55.50 0.72 -22.59 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 3 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.11 9.68 -14.94 -0.14 -8.26 16 8 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.19 5.29 -10.96 -0.06 -13.25 16 10 C 0.43 9.61 7.85 -10.98 -0.09 9.52 16 11 O -0.59 -14.98 15.30 5.54 0.08 -14.90 16 12 C 0.11 1.70 6.70 -5.19 -0.03 1.67 16 13 N -1.10 -16.54 5.93 -11.65 -0.07 -16.61 16 14 S 2.70 37.05 5.74 -107.50 -0.62 36.43 16 15 O -0.96 -15.27 16.75 -57.17 -0.96 -16.23 16 16 O -0.96 -15.02 17.28 -57.17 -0.99 -16.01 16 17 C -0.67 -7.65 5.95 -39.58 -0.24 -7.88 16 18 C -0.02 -0.17 9.52 -39.58 -0.38 -0.54 16 19 C -0.13 -1.12 9.70 -39.59 -0.38 -1.50 16 20 C -0.04 -0.29 5.13 -104.62 -0.54 -0.83 16 21 C -0.10 -0.53 5.47 -27.88 -0.15 -0.69 16 22 C -0.03 -0.14 6.64 37.16 0.25 0.11 16 23 Cl -0.18 -1.30 29.15 -51.86 -1.51 -2.81 16 24 C -0.14 -1.12 9.70 -39.59 -0.38 -1.50 16 25 C -0.01 -0.14 9.52 -39.58 -0.38 -0.52 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.40 8.88 7.90 -40.82 -0.32 8.55 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.39 7.75 -51.93 -0.40 0.99 16 30 H 0.43 6.78 7.70 -34.47 -0.27 6.51 16 31 H 0.14 1.33 7.61 -52.48 -0.40 0.93 16 32 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.09 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.14 1.29 7.62 -52.49 -0.40 0.89 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -33.61 361.49 -9.78 -43.40 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.25 Total: 11.72 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.56 Total: -9.86 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.60 Total: -52.45 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.86 Total: -47.13 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 37.05 SS G_CDS: -0.62 Total: 36.43 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.51 Total: -2.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.61 -9.78 -43.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796216263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.023 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds