Wall clock time and date at job start Sat Apr 11 2020 07:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99866 * 3 2 1 5 5 H 1.48494 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46882 * 120.00085 * 3 2 1 7 7 C 1.38946 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99864 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00074 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99900 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47282 * 180.02562 * 12 10 9 14 14 S 1.65599 * 120.00418 * 165.00028 * 13 12 10 15 15 O 1.42100 * 106.40241 * 311.46108 * 14 13 12 16 16 O 1.42096 * 106.40379 * 178.53729 * 14 13 12 17 17 C 1.76199 * 107.21658 * 65.00023 * 14 13 12 18 18 C 1.38238 * 120.00251 * 269.72679 * 17 14 13 19 19 C 1.38228 * 120.00121 * 179.76592 * 18 17 14 20 20 C 1.38234 * 120.00032 * 0.48826 * 19 18 17 21 21 C 1.50706 * 120.00191 * 179.77047 * 20 19 18 22 22 C 1.53000 * 109.46736 * 270.02352 * 21 20 19 23 23 Cl 1.80299 * 109.46893 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.99845 * 359.78460 * 20 19 18 25 25 C 1.38234 * 120.00019 * 90.00010 * 17 14 13 26 26 H 0.96995 * 119.99484 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00682 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.47433 * 60.00684 * 12 10 9 29 29 H 1.08996 * 109.47407 * 300.00086 * 12 10 9 30 30 H 0.97001 * 119.99713 * 345.00235 * 13 12 10 31 31 H 1.08004 * 119.99572 * 0.02562 * 18 17 14 32 32 H 1.08004 * 120.00400 * 180.25458 * 19 18 17 33 33 H 1.09000 * 109.47114 * 30.01506 * 21 20 19 34 34 H 1.08992 * 109.47323 * 150.02185 * 21 20 19 35 35 H 1.09004 * 109.47064 * 299.99612 * 22 21 20 36 36 H 1.08997 * 109.47789 * 59.99684 * 22 21 20 37 37 H 1.08005 * 119.99901 * 179.97438 * 24 20 19 38 38 H 1.07999 * 120.00005 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1020 1.6964 -1.2126 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0004 14 16 1.6805 -7.5060 0.3704 15 8 0.9166 -7.3940 1.5633 16 8 2.8161 -8.3518 0.2512 17 6 0.5579 -7.9993 -0.8949 18 6 -0.7931 -7.7391 -0.7603 19 6 -1.6731 -8.1217 -1.7552 20 6 -1.2036 -8.7736 -2.8801 21 6 -2.1638 -9.1954 -3.9624 22 6 -2.6738 -10.6079 -3.6695 23 17 -3.8220 -11.1129 -4.9647 24 6 0.1465 -9.0388 -3.0121 25 6 1.0274 -8.6515 -2.0197 26 1 -0.4849 0.8400 -0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.6174 -4.9205 -0.8914 29 1 0.6167 -4.9209 0.8886 30 1 3.1278 -5.8178 -0.2171 31 1 -1.1604 -7.2330 0.1203 32 1 -2.7281 -7.9148 -1.6519 33 1 -3.0058 -8.5038 -3.9909 34 1 -1.6530 -9.1860 -4.9252 35 1 -1.8319 -11.2996 -3.6409 36 1 -3.1846 -10.6174 -2.7067 37 1 0.5133 -9.5485 -3.8909 38 1 2.0822 -8.8591 -2.1227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796216263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:53 Heat of formation + Delta-G solvation = -130.837171 kcal Electronic energy + Delta-G solvation = -24795.131404 eV Core-core repulsion = 20788.857748 eV Total energy + Delta-G solvation = -4006.273657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48359 -40.25513 -38.39829 -37.10560 -37.01698 -36.33207 -35.39251 -34.93328 -33.32138 -32.07575 -30.40511 -28.76657 -26.16340 -25.23239 -23.91878 -22.35549 -21.41469 -20.60514 -20.05550 -19.20903 -18.67395 -17.46798 -17.26782 -16.89371 -16.74668 -16.40219 -16.07513 -15.91487 -15.54768 -15.39681 -15.23896 -15.07507 -14.48783 -14.34621 -14.17954 -13.92556 -13.61790 -13.56623 -13.29358 -13.20670 -13.12898 -12.90965 -12.83776 -12.77638 -12.44377 -12.12462 -12.10277 -11.89235 -11.54358 -11.49976 -11.28223 -10.71877 -10.43546 -10.21715 -10.05885 -10.04813 -8.48764 -5.97895 -0.72878 -0.28598 0.29734 1.33299 1.39443 1.43877 1.53879 1.89113 1.95836 2.29817 2.42648 2.73614 3.07017 3.18602 3.31241 3.69545 3.70607 3.89215 3.96581 3.96979 4.03122 4.33178 4.35198 4.39661 4.44066 4.44411 4.67584 4.71362 4.75313 4.99111 5.00473 5.08152 5.13473 5.40666 5.42411 5.82618 5.88276 6.00085 6.53500 7.07888 7.48702 8.01573 8.67790 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.002390 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.374639 B =11712.459491 C =13355.409191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.562 5.562 10 C 0.433 3.567 11 O -0.626 6.626 12 C 0.114 3.886 13 N -1.103 6.103 14 S 2.715 3.285 15 O -0.983 6.983 16 O -0.984 6.984 17 C -0.681 4.681 18 C -0.031 4.031 19 C -0.135 4.135 20 C -0.030 4.030 21 C -0.093 4.093 22 C -0.023 4.023 23 Cl -0.201 7.201 24 C -0.136 4.136 25 C -0.030 4.030 26 H 0.280 0.720 27 H 0.401 0.599 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.424 0.576 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.158 0.842 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.349 -20.017 -8.751 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.198 5.198 10 C 0.219 3.781 11 O -0.514 6.514 12 C -0.015 4.015 13 N -0.865 5.865 14 S 2.808 3.192 15 O -0.973 6.973 16 O -0.974 6.974 17 C -0.771 4.771 18 C -0.050 4.050 19 C -0.153 4.153 20 C -0.030 4.030 21 C -0.130 4.130 22 C -0.085 4.085 23 Cl -0.174 7.174 24 C -0.155 4.155 25 C -0.049 4.049 26 H 0.089 0.911 27 H 0.236 0.764 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.262 0.738 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.176 0.824 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.715 -20.388 -8.055 23.591 hybrid contribution 0.080 1.096 -0.532 1.221 sum -8.634 -19.293 -8.587 22.815 Atomic orbital electron populations 1.69652 1.06756 1.29586 1.49443 1.26034 0.96548 1.02388 0.95955 0.84997 0.77797 0.76664 0.78953 1.19620 1.19520 1.19836 1.19652 0.92868 0.83781 1.50364 0.89994 1.41846 1.09623 1.04504 1.63840 1.20566 0.88235 0.86060 0.83199 1.90486 1.15659 1.87530 1.57683 1.20961 0.91106 0.84108 1.05376 1.55124 1.19889 1.22802 1.88685 1.00934 0.72966 0.71337 0.73943 1.93545 1.72877 1.86166 1.44723 1.93544 1.51032 1.65349 1.87517 1.30595 1.10931 1.17538 1.18071 1.21223 0.90852 0.93936 0.98998 1.21528 1.01389 0.99225 0.93202 1.20276 0.94342 0.93679 0.94720 1.21014 0.98778 0.95816 0.97399 1.24431 0.94901 0.97199 0.92004 1.98739 1.67200 1.92716 1.58786 1.21503 0.92795 1.01219 0.99950 1.21153 1.01341 0.91585 0.90814 0.91095 0.76432 0.86702 0.86870 0.73823 0.83221 0.82333 0.88329 0.88342 0.87656 0.87655 0.82418 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.12 13.05 21.66 0.28 -46.83 16 2 C -0.01 -0.43 5.50 84.92 0.47 0.03 16 3 Si 0.99 41.33 29.55 68.60 2.03 43.35 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.34 -18.30 9.68 84.04 0.81 -17.48 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.56 -27.14 5.29 -306.98 -1.62 -28.76 16 10 C 0.43 19.33 7.85 87.66 0.69 20.01 16 11 O -0.63 -32.62 15.30 -3.08 -0.05 -32.67 16 12 C 0.11 3.59 6.70 85.63 0.57 4.17 16 13 N -1.10 -33.16 5.93 -190.79 -1.13 -34.29 16 14 S 2.72 74.06 5.74 -56.49 -0.32 73.74 16 15 O -0.98 -31.22 16.75 -128.00 -2.14 -33.37 16 16 O -0.98 -31.11 17.28 -128.00 -2.21 -33.32 16 17 C -0.68 -14.56 5.95 22.27 0.13 -14.43 16 18 C -0.03 -0.56 9.52 22.27 0.21 -0.35 16 19 C -0.13 -1.83 9.70 22.27 0.22 -1.62 16 20 C -0.03 -0.35 5.13 -19.87 -0.10 -0.46 16 21 C -0.09 -0.70 5.47 29.85 0.16 -0.54 16 22 C -0.02 -0.16 6.64 71.98 0.48 0.31 16 23 Cl -0.20 -2.42 29.15 -2.72 -0.08 -2.50 16 24 C -0.14 -1.85 9.70 22.27 0.22 -1.63 16 25 C -0.03 -0.55 9.52 22.27 0.21 -0.34 16 26 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 27 H 0.40 18.04 7.90 -92.71 -0.73 17.31 16 28 H 0.12 2.81 8.14 -2.38 -0.02 2.80 16 29 H 0.11 3.18 7.75 -2.39 -0.02 3.16 16 30 H 0.42 13.71 7.70 -96.74 -0.75 12.96 16 31 H 0.15 2.50 7.61 -2.91 -0.02 2.48 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.10 0.67 8.09 -2.39 -0.02 0.65 16 34 H 0.10 0.65 8.08 -2.39 -0.02 0.63 16 35 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.15 2.51 7.62 -2.91 -0.02 2.49 16 Total: -1.00 -72.74 361.49 -1.53 -74.27 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.35 Total: 32.69 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.07 Total: -12.31 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -2.47 Total: -109.89 kcal Atomic # 8 Polarization: -94.95 SS G_CDS: -4.40 Total: -99.35 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 74.06 SS G_CDS: -0.32 Total: 73.74 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.50 kcal Total: -72.74 -1.53 -74.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796216263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.562 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds