Wall clock time and date at job start Sat Apr 11 2020 07:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35930 * 116.99908 * 2 1 4 4 C 1.39062 * 120.48055 * 0.02562 * 3 2 1 5 5 C 1.38596 * 118.39109 * 179.72928 * 4 3 2 6 6 S 1.76196 * 120.37561 * 180.26720 * 5 4 3 7 7 O 1.42097 * 106.40269 * 23.76807 * 6 5 4 8 8 O 1.42100 * 106.40441 * 156.69102 * 6 5 4 9 9 N 1.65602 * 107.21554 * 270.22893 * 6 5 4 10 10 C 1.46497 * 120.00063 * 65.00381 * 9 6 5 11 11 C 1.53006 * 109.47110 * 164.43737 * 10 9 6 12 12 C 1.50691 * 115.55031 * 65.11626 * 11 10 9 13 13 H 1.08006 * 119.99939 * 264.73199 * 12 11 10 14 14 C 1.37877 * 120.00144 * 84.73983 * 12 11 10 15 15 N 1.31516 * 119.99886 * 352.53554 * 14 12 11 16 16 Si 1.86805 * 120.00127 * 172.54253 * 14 12 11 17 17 H 1.48502 * 109.46909 * 59.99679 * 16 14 12 18 18 H 1.48496 * 109.47179 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46933 * 299.99786 * 16 14 12 20 20 C 1.53002 * 117.49387 * 279.44636 * 11 10 9 21 21 C 1.53002 * 117.49514 * 210.79130 * 11 10 9 22 22 C 1.38200 * 119.24864 * 0.49272 * 5 4 3 23 23 N 1.31894 * 120.89545 * 359.49637 * 22 5 4 24 24 C 1.31914 * 121.76329 * 0.25119 * 23 22 5 25 25 Cl 1.73597 * 119.67342 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.46814 * 299.99879 * 1 2 3 27 27 H 1.08997 * 109.47010 * 60.00127 * 1 2 3 28 28 H 1.08999 * 109.46718 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.79865 * 359.97438 * 4 3 2 30 30 H 0.97001 * 119.99921 * 244.99490 * 9 6 5 31 31 H 1.09004 * 109.47049 * 284.43005 * 10 9 6 32 32 H 1.08994 * 109.47496 * 44.43381 * 10 9 6 33 33 H 0.96998 * 119.99854 * 185.02546 * 15 14 12 34 34 H 1.08998 * 117.50309 * 359.97438 * 20 11 10 35 35 H 1.08996 * 117.49614 * 145.02557 * 20 11 10 36 36 H 1.09001 * 117.49083 * 214.97939 * 21 11 10 37 37 H 1.09001 * 117.50240 * 359.96706 * 21 11 10 38 38 H 1.07997 * 119.55422 * 179.77205 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2986 2.3837 0.0005 5 6 1.9724 3.5949 0.0063 6 16 1.0771 5.1124 0.0143 7 8 -0.2010 4.8214 0.5629 8 8 1.9518 6.0914 0.5582 9 7 0.8219 5.5393 -1.5653 10 6 -0.0218 4.7033 -2.4228 11 6 -0.4115 5.4889 -3.6766 12 6 0.7259 5.8504 -4.5967 13 1 1.1989 6.8180 -4.5162 14 6 1.1625 4.9460 -5.5414 15 7 0.6894 3.7188 -5.5449 16 14 2.4260 5.4636 -6.8162 17 1 3.6707 5.8967 -6.1319 18 1 2.7264 4.3162 -7.7097 19 1 1.8856 6.5892 -7.6200 20 6 -1.5662 6.4853 -3.5554 21 6 -1.7647 5.1722 -4.3165 22 6 3.3544 3.5988 0.0009 23 7 4.0348 2.4689 0.0003 24 6 3.4322 1.2954 -0.0001 25 17 4.3815 -0.1581 -0.0014 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2191 2.3513 0.0005 30 1 1.2310 6.3430 -1.9226 31 1 0.5283 3.8077 -2.7116 32 1 -0.9220 4.4171 -1.8789 33 1 1.0489 3.0623 -6.1618 34 1 -2.0485 6.5809 -2.5826 35 1 -1.5034 7.4021 -4.1415 36 1 -1.8323 5.2256 -5.4031 37 1 -2.3771 4.4038 -3.8446 38 1 3.8844 4.5397 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797458297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:41:58 Heat of formation + Delta-G solvation = -52.316591 kcal Electronic energy + Delta-G solvation = -26369.615922 eV Core-core repulsion = 22366.747173 eV Total energy + Delta-G solvation = -4002.868749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93010 -38.49134 -37.29022 -36.95820 -36.84919 -35.74193 -33.45995 -32.67122 -32.05617 -30.97273 -27.79182 -26.07708 -25.03992 -24.29783 -23.49568 -21.23072 -19.79817 -19.42612 -18.56824 -17.73907 -17.40583 -17.11799 -16.62170 -16.26401 -16.16170 -15.44135 -14.77715 -14.73182 -14.37019 -14.33737 -13.97311 -13.75796 -13.20421 -12.97052 -12.55757 -12.21487 -12.14754 -12.03838 -11.97908 -11.88041 -11.76086 -11.63752 -11.46710 -11.31845 -11.10454 -11.02326 -10.59007 -10.33713 -10.24185 -10.00181 -9.69526 -9.19615 -8.80927 -8.73427 -8.55797 -8.28087 -6.18489 -4.25777 0.14388 0.57559 0.84710 1.54777 2.75780 3.02200 3.22125 3.28166 3.30490 3.32245 3.85826 4.06300 4.25939 4.28531 4.53330 4.67357 4.69711 4.94714 4.98752 5.10028 5.16342 5.22786 5.31795 5.47602 5.70968 5.89433 6.12347 6.23005 6.26333 6.42834 6.66003 6.72537 6.86452 6.97627 7.27737 7.30737 7.41069 7.57132 7.73313 8.25503 8.75717 9.41689 10.89366 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004430 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.157247 B = 6319.504634 C = 7270.974539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.297 6.297 3 C 0.078 3.922 4 C -0.049 4.049 5 C -0.688 4.688 6 S 2.698 3.302 7 O -0.958 6.958 8 O -0.961 6.961 9 N -1.089 6.089 10 C 0.157 3.843 11 C 0.036 3.964 12 C -0.499 4.499 13 H 0.062 0.938 14 C 0.075 3.925 15 N -0.877 5.877 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.207 4.207 21 C -0.151 4.151 22 C 0.183 3.817 23 N -0.454 5.454 24 C 0.193 3.807 25 Cl -0.009 7.009 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.166 0.834 30 H 0.425 0.575 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.262 0.738 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -6.062 10.820 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.209 6.209 3 C 0.028 3.972 4 C -0.076 4.076 5 C -0.773 4.773 6 S 2.782 3.218 7 O -0.948 6.948 8 O -0.951 6.951 9 N -0.852 5.852 10 C 0.031 3.969 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.513 5.513 16 Si 0.716 3.284 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.245 4.245 21 C -0.190 4.190 22 C 0.025 3.975 23 N -0.165 5.165 24 C 0.027 3.973 25 Cl 0.019 6.981 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.183 0.817 30 H 0.262 0.738 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.887 -6.324 11.491 13.146 hybrid contribution 0.258 -0.275 -1.368 1.419 sum 1.145 -6.600 10.123 12.138 Atomic orbital electron populations 1.23318 0.77110 1.05073 1.02381 1.86177 1.22291 1.24247 1.88142 1.19464 0.91489 0.86350 0.99934 1.21433 1.01432 0.89869 0.94914 1.32256 1.08273 1.21496 1.15230 1.01930 0.73734 0.72800 0.73318 1.93571 1.38950 1.85176 1.77066 1.93579 1.67245 1.56944 1.77303 1.55154 1.63258 1.37031 1.29781 1.20989 0.91606 0.93362 0.90905 1.18881 0.88698 0.96072 0.92979 1.20328 1.16624 1.01275 1.15465 0.92003 1.24966 0.96052 0.94981 0.96902 1.69938 1.41345 1.02540 1.37456 0.86713 0.81727 0.78227 0.81709 1.20120 1.21314 1.20099 1.23031 1.06860 0.94371 1.00216 1.22551 1.01274 0.96302 0.98862 1.22383 0.89065 0.96204 0.89867 1.67225 1.39699 0.96821 1.12772 1.21228 0.86213 0.89956 0.99863 1.98418 1.72711 1.30918 1.96015 0.91959 0.91448 0.87219 0.81664 0.73823 0.91304 0.93227 0.92794 0.91299 0.90243 0.89830 0.91655 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.30 -3.67 9.97 -19.52 -0.19 -3.86 16 3 C 0.08 1.09 6.70 -39.04 -0.26 0.83 16 4 C -0.05 -0.68 8.61 -39.14 -0.34 -1.02 16 5 C -0.69 -10.07 5.96 -39.46 -0.24 -10.30 16 6 S 2.70 41.41 5.75 -107.50 -0.62 40.79 16 7 O -0.96 -16.18 16.83 -57.17 -0.96 -17.14 16 8 O -0.96 -15.93 17.30 -57.17 -0.99 -16.92 16 9 N -1.09 -18.23 5.95 -10.61 -0.06 -18.29 16 10 C 0.16 3.00 6.05 -4.04 -0.02 2.98 16 11 C 0.04 0.78 1.43 -155.66 -0.22 0.55 16 12 C -0.50 -12.07 8.47 -34.44 -0.29 -12.36 16 13 H 0.06 1.48 7.83 -52.48 -0.41 1.07 16 14 C 0.08 1.88 5.38 -17.82 -0.10 1.79 16 15 N -0.88 -22.67 12.98 55.43 0.72 -21.95 16 16 Si 0.89 19.85 29.55 -169.99 -5.02 14.83 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.21 -4.07 9.96 -26.69 -0.27 -4.34 16 21 C -0.15 -3.19 9.49 -26.69 -0.25 -3.44 16 22 C 0.18 2.68 10.68 -17.54 -0.19 2.49 16 23 N -0.45 -7.03 10.34 -10.25 -0.11 -7.14 16 24 C 0.19 2.89 7.29 -17.29 -0.13 2.77 16 25 Cl -0.01 -0.12 28.66 -51.86 -1.49 -1.61 16 26 H 0.06 0.47 7.70 -51.93 -0.40 0.07 16 27 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.17 1.95 6.10 -52.49 -0.32 1.63 16 30 H 0.42 6.95 8.38 -34.47 -0.29 6.66 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 33 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.19 2.28 7.62 -52.49 -0.40 1.88 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -29.69 358.66 -8.91 -38.61 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.29 Total: 6.22 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.31 Total: -18.93 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.55 Total: -47.39 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -2.15 Total: -37.93 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 41.41 SS G_CDS: -0.62 Total: 40.79 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.49 Total: -1.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.69 -8.91 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797458297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.709 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds