Wall clock time and date at job start Sat Apr 11 2020 07:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21558 * 120.00095 * 359.97438 * 14 13 3 16 16 C 1.47791 * 119.99571 * 180.02562 * 14 13 3 17 17 C 1.39632 * 120.13354 * 359.71911 * 16 14 13 18 18 C 1.37870 * 119.86887 * 179.81127 * 17 16 14 19 19 C 1.38533 * 120.12789 * 0.44858 * 18 17 16 20 20 Cl 1.73603 * 119.86822 * 179.76489 * 19 18 17 21 21 C 1.38492 * 120.26659 * 359.78088 * 19 18 17 22 22 S 1.76203 * 119.93230 * 179.97438 * 21 19 18 23 23 N 1.65598 * 107.22057 * 295.02291 * 22 21 19 24 24 O 1.42099 * 106.40221 * 48.56590 * 22 21 19 25 25 O 1.42104 * 106.39869 * 181.48416 * 22 21 19 26 26 C 1.37912 * 120.13387 * 0.02562 * 21 19 18 27 27 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 28 28 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 30 30 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 31 31 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 32 32 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 34 34 H 1.08010 * 120.06584 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.93592 * 180.20429 * 18 17 16 36 36 H 0.97002 * 119.99952 * 0.02562 * 23 22 21 37 37 H 0.97001 * 119.99937 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.07009 * 179.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3410 2.6325 0.4321 16 6 0.0444 3.3254 2.6298 17 6 0.9321 3.3593 3.7072 18 6 0.5634 3.9809 4.8812 19 6 -0.6884 4.5631 4.9965 20 17 -1.1479 5.3387 6.4801 21 6 -1.5749 4.5285 3.9330 22 16 -3.1651 5.2711 4.0895 23 7 -3.9926 4.4193 5.2435 24 8 -2.9506 6.5694 4.6258 25 8 -3.8387 5.0397 2.8598 26 6 -1.2159 3.9130 2.7522 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8770 0.4827 -2.1133 33 1 2.2720 2.1230 1.9979 34 1 1.9069 2.9024 3.6197 35 1 1.2504 4.0106 5.7141 36 1 -3.5712 3.6654 5.6851 37 1 -4.8987 4.6742 5.4779 38 1 -1.9082 3.8863 1.9237 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798339273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:05 Heat of formation + Delta-G solvation = -83.106947 kcal Electronic energy + Delta-G solvation = -25846.084144 eV Core-core repulsion = 21841.880225 eV Total energy + Delta-G solvation = -4004.203919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36616 -38.72405 -37.47535 -36.94824 -36.07773 -35.49931 -33.54617 -32.88358 -32.09032 -31.64715 -30.82865 -27.64397 -24.42971 -23.85729 -22.68042 -21.29332 -20.11110 -19.68308 -19.02635 -17.74855 -17.37748 -17.17847 -16.60459 -16.21639 -15.80385 -15.72326 -15.22302 -14.87728 -14.61468 -14.40113 -14.03843 -13.61461 -13.16904 -13.08289 -12.56376 -12.44564 -12.36750 -12.28934 -12.22616 -12.07628 -11.95648 -11.81911 -11.77772 -11.18411 -11.07307 -11.00947 -10.80093 -10.71709 -10.02684 -9.98882 -9.74357 -9.41755 -9.33790 -9.26461 -8.85214 -8.25869 -6.29658 -4.33429 -0.07191 0.15102 0.55611 1.36070 2.45116 2.79704 3.17443 3.25700 3.30575 3.34477 3.53160 3.63620 4.04306 4.24030 4.44708 4.52283 4.69376 4.86116 4.96861 5.03926 5.28744 5.37765 5.58745 5.63609 5.75936 5.86880 5.93491 6.07243 6.11292 6.54921 6.60701 6.65949 6.71812 6.84814 7.08378 7.16568 7.37747 7.97167 8.34314 8.59612 8.71252 9.30093 10.82123 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.002878 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.125399 B = 9727.900551 C =10495.446269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.293 1.293 13 N -0.690 5.690 14 C 0.542 3.458 15 O -0.534 6.534 16 C -0.134 4.134 17 C -0.020 4.020 18 C -0.131 4.131 19 C 0.059 3.941 20 Cl -0.037 7.037 21 C -0.680 4.680 22 S 2.702 3.298 23 N -1.247 6.247 24 O -0.946 6.946 25 O -0.954 6.954 26 C 0.047 3.953 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.269 0.731 33 H 0.394 0.606 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.416 0.584 37 H 0.422 0.578 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 4.669 17.785 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.220 1.220 13 N -0.338 5.338 14 C 0.327 3.673 15 O -0.413 6.413 16 C -0.138 4.138 17 C -0.039 4.039 18 C -0.150 4.150 19 C 0.031 3.969 20 Cl -0.007 7.007 21 C -0.766 4.766 22 S 2.788 3.212 23 N -0.922 5.922 24 O -0.935 6.935 25 O -0.944 6.944 26 C 0.026 3.974 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.228 0.772 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.243 0.757 37 H 0.253 0.747 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.046 5.488 16.479 22.979 hybrid contribution 0.448 -1.189 0.276 1.300 sum -14.598 4.299 16.755 22.634 Atomic orbital electron populations 1.21895 0.96867 0.99266 1.02293 1.22299 0.94409 0.99731 1.01332 1.19249 0.95886 0.88616 0.82361 0.92913 1.20996 0.88366 1.40265 1.08076 0.90161 1.24825 0.94888 0.95035 0.97645 1.69859 1.08707 1.44183 1.29841 0.86907 0.80990 0.79961 0.80936 1.20161 1.18374 1.22047 1.46147 1.14212 1.55162 1.18287 1.17968 0.83204 0.79571 0.86564 1.90794 1.51396 1.59640 1.39452 1.20553 0.95375 1.02023 0.95858 1.21799 0.99036 0.92124 0.90906 1.21153 0.94992 0.99378 0.99484 1.20715 0.94876 0.94058 0.87266 1.98460 1.91580 1.78627 1.32056 1.30511 1.24222 1.21139 1.00720 1.01741 0.72808 0.73366 0.73306 1.52973 1.28944 1.49249 1.61061 1.93654 1.84978 1.36000 1.78906 1.93637 1.72024 1.85103 1.43589 1.21141 0.95382 0.86241 0.94596 0.92678 0.94767 0.93052 0.92531 0.92197 0.92155 0.77155 0.83143 0.83104 0.75700 0.74745 0.81427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.51 37.16 0.32 -2.47 16 2 C -0.14 -2.92 5.11 -26.73 -0.14 -3.05 16 3 C 0.24 5.40 1.83 -69.08 -0.13 5.27 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -13.83 9.31 -34.44 -0.32 -14.15 16 6 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 9 Si 0.88 21.01 24.41 -169.99 -4.15 16.86 16 10 H -0.27 -6.33 6.83 56.52 0.39 -5.94 16 11 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.69 -12.47 4.97 -55.89 -0.28 -12.75 16 14 C 0.54 9.47 6.34 -12.35 -0.08 9.39 16 15 O -0.53 -11.02 13.48 5.31 0.07 -10.95 16 16 C -0.13 -1.81 5.87 -104.96 -0.62 -2.42 16 17 C -0.02 -0.20 9.54 -39.20 -0.37 -0.57 16 18 C -0.13 -1.15 9.81 -39.61 -0.39 -1.54 16 19 C 0.06 0.58 6.31 -39.38 -0.25 0.33 16 20 Cl -0.04 -0.32 26.44 -51.86 -1.37 -1.69 16 21 C -0.68 -7.43 5.87 -39.61 -0.23 -7.67 16 22 S 2.70 27.94 5.60 -107.50 -0.60 27.34 16 23 N -1.25 -7.37 9.32 60.35 0.56 -6.81 16 24 O -0.95 -11.98 16.48 -57.17 -0.94 -12.92 16 25 O -0.95 -12.95 16.96 -57.17 -0.97 -13.92 16 26 C 0.05 0.60 9.09 -39.19 -0.36 0.25 16 27 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.95 5.64 -51.93 -0.29 0.65 16 30 H 0.06 1.26 3.22 -51.93 -0.17 1.09 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.39 6.00 6.57 -40.82 -0.27 5.73 16 34 H 0.15 1.25 6.40 -52.48 -0.34 0.91 16 35 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.42 1.64 8.92 -34.47 -0.31 1.33 16 37 H 0.42 1.60 8.96 -34.47 -0.31 1.30 16 38 H 0.17 2.30 6.92 -52.49 -0.36 1.94 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -34.53 336.88 -8.15 -42.68 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.67 Total: 6.38 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.66 Total: -14.56 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 1.06 Total: -44.30 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.84 Total: -37.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal Atomic # 16 Polarization: 27.94 SS G_CDS: -0.60 Total: 27.34 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.37 Total: -1.69 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.53 -8.15 -42.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798339273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.426 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds