Wall clock time and date at job start Sat Apr 11 2020 07:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21558 * 120.00095 * 359.97438 * 14 13 3 16 16 C 1.47791 * 119.99571 * 180.02562 * 14 13 3 17 17 C 1.39632 * 120.13354 * 359.71911 * 16 14 13 18 18 C 1.37870 * 119.86887 * 179.81127 * 17 16 14 19 19 C 1.38533 * 120.12789 * 0.44858 * 18 17 16 20 20 Cl 1.73603 * 119.86822 * 179.76489 * 19 18 17 21 21 C 1.38492 * 120.26659 * 359.78088 * 19 18 17 22 22 S 1.76203 * 119.93230 * 179.97438 * 21 19 18 23 23 N 1.65598 * 107.22057 * 295.02291 * 22 21 19 24 24 O 1.42099 * 106.40221 * 48.56590 * 22 21 19 25 25 O 1.42104 * 106.39869 * 181.48416 * 22 21 19 26 26 C 1.37912 * 120.13387 * 0.02562 * 21 19 18 27 27 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 28 28 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 30 30 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 31 31 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 32 32 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 34 34 H 1.08010 * 120.06584 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.93592 * 180.20429 * 18 17 16 36 36 H 0.97002 * 119.99952 * 0.02562 * 23 22 21 37 37 H 0.97001 * 119.99937 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.07009 * 179.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3410 2.6325 0.4321 16 6 0.0444 3.3254 2.6298 17 6 0.9321 3.3593 3.7072 18 6 0.5634 3.9809 4.8812 19 6 -0.6884 4.5631 4.9965 20 17 -1.1479 5.3387 6.4801 21 6 -1.5749 4.5285 3.9330 22 16 -3.1651 5.2711 4.0895 23 7 -3.9926 4.4193 5.2435 24 8 -2.9506 6.5694 4.6258 25 8 -3.8387 5.0397 2.8598 26 6 -1.2159 3.9130 2.7522 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8770 0.4827 -2.1133 33 1 2.2720 2.1230 1.9979 34 1 1.9069 2.9024 3.6197 35 1 1.2504 4.0106 5.7141 36 1 -3.5712 3.6654 5.6851 37 1 -4.8987 4.6742 5.4779 38 1 -1.9082 3.8863 1.9237 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798339273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:04 Heat of formation + Delta-G solvation = -111.750679 kcal Electronic energy + Delta-G solvation = -25847.326230 eV Core-core repulsion = 21841.880225 eV Total energy + Delta-G solvation = -4005.446004 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52911 -39.89320 -38.40094 -37.78857 -37.14250 -37.01526 -34.54442 -34.15310 -33.70895 -32.59420 -31.98515 -29.43389 -25.62096 -24.84609 -24.29630 -22.59348 -21.56130 -20.74937 -20.06303 -18.82904 -18.47802 -18.06082 -17.75791 -17.66665 -17.12112 -16.66904 -16.46094 -16.17103 -15.98996 -15.33716 -15.20712 -15.01262 -14.85002 -14.15062 -13.96313 -13.80882 -13.67158 -13.31708 -13.28613 -13.21946 -13.17329 -13.01130 -12.78305 -12.77132 -12.62935 -12.40493 -11.92032 -11.85854 -11.41918 -11.39595 -11.25437 -10.96908 -10.85843 -10.83381 -10.20430 -9.84069 -8.38705 -6.44286 -0.91677 -0.72311 -0.34630 0.56909 1.26989 1.36468 1.44983 1.45733 2.00508 2.19223 2.25756 2.35538 2.56102 2.97679 3.19052 3.51469 3.65999 3.71764 3.99149 4.02969 4.22795 4.31246 4.37754 4.47250 4.53509 4.71022 4.83309 4.87621 5.00812 5.10672 5.19873 5.21695 5.25589 5.37690 5.50721 5.57151 6.11023 6.28992 6.56920 6.74646 7.15741 7.32118 8.76015 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.002878 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.125399 B = 9727.900551 C =10495.446269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.248 3.752 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.932 3.068 10 H -0.258 1.258 11 H -0.261 1.261 12 H -0.296 1.296 13 N -0.688 5.688 14 C 0.544 3.456 15 O -0.572 6.572 16 C -0.152 4.152 17 C -0.009 4.009 18 C -0.118 4.118 19 C 0.063 3.937 20 Cl -0.021 7.021 21 C -0.678 4.678 22 S 2.719 3.281 23 N -1.228 6.228 24 O -0.970 6.970 25 O -0.991 6.991 26 C 0.036 3.964 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.270 0.730 33 H 0.408 0.592 34 H 0.172 0.828 35 H 0.189 0.811 36 H 0.428 0.572 37 H 0.434 0.566 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.236 4.221 20.351 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.042 0.958 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.759 3.241 10 H -0.184 1.184 11 H -0.186 1.186 12 H -0.223 1.223 13 N -0.338 5.338 14 C 0.331 3.669 15 O -0.453 6.453 16 C -0.156 4.156 17 C -0.027 4.027 18 C -0.136 4.136 19 C 0.035 3.965 20 Cl 0.009 6.991 21 C -0.765 4.765 22 S 2.805 3.195 23 N -0.910 5.910 24 O -0.959 6.959 25 O -0.980 6.980 26 C 0.015 3.985 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.190 0.810 35 H 0.206 0.794 36 H 0.258 0.742 37 H 0.268 0.732 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.839 5.039 19.093 25.315 hybrid contribution 0.669 -0.954 -0.352 1.217 sum -15.170 4.086 18.742 24.456 Atomic orbital electron populations 1.21793 0.95337 1.00708 1.01607 1.22216 0.95714 0.98282 1.01375 1.18869 0.93489 0.89794 0.83482 0.95779 1.21248 0.90070 1.38651 1.07119 0.92010 1.25492 0.95643 0.95883 0.99734 1.69961 1.10194 1.46029 1.30820 0.86105 0.79357 0.80084 0.78504 1.18421 1.18574 1.22315 1.45894 1.15088 1.55379 1.17407 1.18458 0.82217 0.78669 0.87538 1.90772 1.52340 1.60921 1.41253 1.20181 0.96557 1.03819 0.95080 1.22014 0.99096 0.91450 0.90187 1.21533 0.94873 0.97481 0.99753 1.20900 0.94989 0.93323 0.87335 1.98475 1.91521 1.78243 1.30905 1.30396 1.24649 1.20951 1.00479 1.00975 0.72459 0.73042 0.73015 1.52547 1.29352 1.49182 1.59909 1.93627 1.85310 1.37738 1.79190 1.93600 1.72858 1.85602 1.45971 1.20991 0.95176 0.87250 0.95055 0.94508 0.92148 0.92684 0.93727 0.90792 0.92074 0.75468 0.81035 0.79426 0.74183 0.73191 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.51 71.98 0.61 -4.45 16 2 C -0.14 -5.60 5.11 30.60 0.16 -5.44 16 3 C 0.25 11.07 1.83 44.24 0.08 11.15 16 4 H 0.02 1.23 6.63 -2.39 -0.02 1.21 16 5 C -0.53 -27.55 9.31 25.60 0.24 -27.31 16 6 H 0.06 3.35 7.98 -2.91 -0.02 3.33 16 7 C 0.03 1.78 5.45 84.65 0.46 2.24 16 8 N -0.93 -54.21 13.96 21.45 0.30 -53.91 16 9 Si 0.93 43.54 24.41 68.60 1.67 45.22 16 10 H -0.26 -11.32 6.83 99.48 0.68 -10.64 16 11 H -0.26 -12.17 6.53 99.48 0.65 -11.52 16 12 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 13 N -0.69 -24.51 4.97 -449.02 -2.23 -26.74 16 14 C 0.54 18.91 6.34 86.77 0.55 19.46 16 15 O -0.57 -24.10 13.48 -3.90 -0.05 -24.15 16 16 C -0.15 -3.95 5.87 -20.09 -0.12 -4.07 16 17 C -0.01 -0.15 9.54 22.52 0.21 0.06 16 18 C -0.12 -1.63 9.81 22.25 0.22 -1.41 16 19 C 0.06 1.05 6.31 22.40 0.14 1.20 16 20 Cl -0.02 -0.31 26.44 -2.72 -0.07 -0.38 16 21 C -0.68 -13.88 5.87 22.25 0.13 -13.75 16 22 S 2.72 53.70 5.60 -56.49 -0.32 53.38 16 23 N -1.23 -12.11 9.32 37.02 0.35 -11.76 16 24 O -0.97 -23.40 16.48 -128.00 -2.11 -25.51 16 25 O -0.99 -27.08 16.96 -128.00 -2.17 -29.25 16 26 C 0.04 0.91 9.09 22.52 0.20 1.12 16 27 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.97 5.64 -2.39 -0.01 1.96 16 30 H 0.04 1.92 3.22 -2.38 -0.01 1.92 16 31 H 0.07 2.77 8.14 -2.38 -0.02 2.76 16 32 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.41 11.91 6.57 -92.71 -0.61 11.30 16 34 H 0.17 2.27 6.40 -2.91 -0.02 2.25 16 35 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.43 2.28 8.92 -96.74 -0.86 1.42 16 37 H 0.43 2.40 8.96 -96.75 -0.87 1.53 16 38 H 0.15 4.34 6.92 -2.91 -0.02 4.32 16 Total: -1.00 -75.95 336.88 -3.00 -78.94 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -1.25 Total: 15.35 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 2.89 Total: -21.19 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -1.59 Total: -92.41 kcal Atomic # 8 Polarization: -74.58 SS G_CDS: -4.33 Total: -78.91 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.67 Total: 45.22 kcal Atomic # 16 Polarization: 53.70 SS G_CDS: -0.32 Total: 53.38 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.07 Total: -0.38 kcal Total: -75.95 -3.00 -78.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798339273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.808 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds