Wall clock time and date at job start Sat Apr 11 2020 07:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 3 16 16 C 1.47788 * 119.99564 * 179.72378 * 14 13 3 17 17 C 1.39631 * 120.13091 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.86617 * 180.02562 * 17 16 14 19 19 C 1.38540 * 120.13081 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.86934 * 180.02562 * 19 18 17 21 21 C 1.38489 * 120.26483 * 0.02592 * 19 18 17 22 22 S 1.76203 * 119.93627 * 179.97438 * 21 19 18 23 23 N 1.65602 * 107.21487 * 294.99941 * 22 21 19 24 24 O 1.42100 * 106.39770 * 48.54073 * 22 21 19 25 25 O 1.42098 * 106.40076 * 181.46228 * 22 21 19 26 26 C 1.37922 * 120.13169 * 359.67566 * 21 19 18 27 27 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 28 28 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.08000 * 120.06997 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.93631 * 180.02562 * 18 17 16 36 36 H 0.96999 * 119.99557 * 149.99531 * 23 22 21 37 37 H 0.96994 * 120.00495 * 330.00350 * 23 22 21 38 38 H 1.08001 * 120.07085 * 180.31792 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4301 16 6 0.0485 3.3354 -2.6256 17 6 0.9379 3.3735 -3.7013 18 6 0.5699 3.9968 -4.8748 19 6 -0.6797 4.5842 -4.9880 20 17 -1.1363 5.3667 -6.4688 21 6 -1.5661 4.5496 -3.9245 22 16 -3.1530 5.3000 -4.0776 23 7 -2.9099 6.9282 -4.2580 24 8 -3.6988 4.8373 -5.3053 25 8 -3.8010 5.1275 -2.8249 26 6 -1.2116 3.9237 -2.7477 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 1.9122 2.9156 -3.6144 35 1 1.2567 4.0266 -5.7077 36 1 -3.5405 7.4589 -4.7694 37 1 -2.1369 7.3510 -3.8524 38 1 -1.9056 3.8928 -1.9208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798339274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:09 Heat of formation + Delta-G solvation = -92.354816 kcal Electronic energy + Delta-G solvation = -25752.221002 eV Core-core repulsion = 21747.616066 eV Total energy + Delta-G solvation = -4004.604937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22935 -38.53993 -37.43722 -36.86995 -36.04876 -35.22060 -33.50688 -32.83445 -31.82420 -31.48767 -30.49193 -27.12515 -24.32988 -23.79707 -22.86526 -20.98278 -19.86014 -19.50090 -18.87530 -17.69578 -17.35751 -17.04725 -16.59044 -16.00388 -15.73028 -15.37342 -14.97247 -14.75404 -14.56577 -14.30024 -13.96992 -13.43583 -13.07061 -12.73878 -12.42778 -12.41252 -12.28345 -12.20742 -12.12600 -11.86130 -11.72789 -11.54822 -11.33247 -11.10788 -11.05796 -10.92139 -10.70537 -10.40821 -10.28202 -9.91800 -9.72438 -9.34319 -9.17766 -9.15312 -8.59390 -8.00497 -6.20937 -4.31396 0.00069 0.22738 0.63529 1.44065 2.54813 2.87402 3.18535 3.25515 3.26724 3.34997 3.69993 3.77846 4.10446 4.27160 4.50884 4.58683 4.79823 4.91067 5.07122 5.11007 5.35166 5.46708 5.66717 5.69444 5.85344 6.19160 6.32851 6.38472 6.58016 6.72679 6.95568 7.10680 7.21938 7.29781 7.51094 7.60551 7.78749 8.07813 8.45253 8.63980 8.89663 9.35866 10.84325 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.002774 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.389011 B =10090.021063 C =10854.204122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.539 3.461 15 O -0.533 6.533 16 C -0.132 4.132 17 C -0.022 4.022 18 C -0.133 4.133 19 C 0.062 3.938 20 Cl -0.039 7.039 21 C -0.683 4.683 22 S 2.702 3.298 23 N -1.244 6.244 24 O -0.948 6.948 25 O -0.952 6.952 26 C 0.044 3.956 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.266 0.734 33 H 0.387 0.613 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.422 0.578 37 H 0.418 0.582 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 11.681 -16.520 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.345 5.345 14 C 0.323 3.677 15 O -0.412 6.412 16 C -0.137 4.137 17 C -0.041 4.041 18 C -0.152 4.152 19 C 0.034 3.966 20 Cl -0.010 7.010 21 C -0.769 4.769 22 S 2.787 3.213 23 N -0.919 5.919 24 O -0.937 6.937 25 O -0.941 6.941 26 C 0.023 3.977 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.221 0.779 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.252 0.748 37 H 0.245 0.755 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.310 10.943 -15.723 20.881 hybrid contribution 2.274 0.367 -0.480 2.353 sum -6.035 11.310 -16.203 20.661 Atomic orbital electron populations 1.21858 0.98261 0.98317 1.01248 1.21945 0.92676 0.99565 1.02478 1.18893 0.94433 0.89317 0.80517 0.92921 1.21184 0.90470 1.39503 1.06498 0.92069 1.24881 0.98704 0.94661 0.95331 1.69886 1.35247 1.37237 1.09303 0.86439 0.84658 0.77726 0.78216 1.20528 1.21014 1.19855 1.46498 1.14133 1.55020 1.18854 1.17950 0.83450 0.79848 0.86412 1.90795 1.51177 1.59811 1.39382 1.20665 0.95261 1.01630 0.96126 1.21769 0.99132 0.92237 0.90960 1.21136 0.95171 0.99581 0.99351 1.20656 0.94308 0.94779 0.86858 1.98448 1.91817 1.78055 1.32631 1.30623 1.24716 1.20931 1.00612 1.01734 0.72658 0.72645 0.74217 1.53042 1.39362 1.28428 1.71082 1.93642 1.75834 1.79476 1.44790 1.93647 1.70852 1.85014 1.44559 1.21170 0.95190 0.86845 0.94450 0.92963 0.94414 0.95622 0.94932 0.88071 0.92421 0.77931 0.83341 0.83304 0.74771 0.75485 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.52 37.16 0.32 -2.71 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.26 16 4 H 0.05 1.46 7.57 -51.93 -0.39 1.07 16 5 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.78 11.29 55.43 0.63 -23.15 16 9 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 N -0.70 -13.31 4.97 -55.90 -0.28 -13.59 16 14 C 0.54 10.06 6.35 -12.35 -0.08 9.98 16 15 O -0.53 -11.82 13.49 5.32 0.07 -11.75 16 16 C -0.13 -1.90 5.87 -104.96 -0.62 -2.52 16 17 C -0.02 -0.24 9.54 -39.19 -0.37 -0.61 16 18 C -0.13 -1.25 9.81 -39.60 -0.39 -1.64 16 19 C 0.06 0.65 6.31 -39.38 -0.25 0.40 16 20 Cl -0.04 -0.36 26.44 -51.86 -1.37 -1.73 16 21 C -0.68 -7.85 5.90 -39.60 -0.23 -8.08 16 22 S 2.70 28.94 5.60 -107.50 -0.60 28.34 16 23 N -1.24 -7.68 9.30 60.35 0.56 -7.12 16 24 O -0.95 -12.15 16.48 -57.17 -0.94 -13.09 16 25 O -0.95 -13.41 16.96 -57.17 -0.97 -14.38 16 26 C 0.04 0.60 9.09 -39.19 -0.36 0.24 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.04 0.79 5.66 -51.93 -0.29 0.50 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.39 6.15 6.57 -40.82 -0.27 5.88 16 34 H 0.15 1.32 6.40 -52.49 -0.34 0.98 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.42 1.72 8.96 -34.47 -0.31 1.41 16 37 H 0.42 1.75 8.96 -34.47 -0.31 1.44 16 38 H 0.17 2.44 6.92 -52.49 -0.36 2.08 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -33.34 343.74 -9.22 -42.55 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.80 Total: 7.87 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.67 Total: -13.91 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.91 Total: -43.86 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.84 Total: -39.21 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 28.94 SS G_CDS: -0.60 Total: 28.34 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.37 Total: -1.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.34 -9.22 -42.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798339274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.800 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds