Wall clock time and date at job start Sat Apr 11 2020 07:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 3 16 16 C 1.47788 * 119.99564 * 179.72378 * 14 13 3 17 17 C 1.39631 * 120.13091 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.86617 * 180.02562 * 17 16 14 19 19 C 1.38540 * 120.13081 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.86934 * 180.02562 * 19 18 17 21 21 C 1.38489 * 120.26483 * 0.02592 * 19 18 17 22 22 S 1.76203 * 119.93627 * 179.97438 * 21 19 18 23 23 N 1.65602 * 107.21487 * 294.99941 * 22 21 19 24 24 O 1.42100 * 106.39770 * 48.54073 * 22 21 19 25 25 O 1.42098 * 106.40076 * 181.46228 * 22 21 19 26 26 C 1.37922 * 120.13169 * 359.67566 * 21 19 18 27 27 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 28 28 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.08000 * 120.06997 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.93631 * 180.02562 * 18 17 16 36 36 H 0.96999 * 119.99557 * 149.99531 * 23 22 21 37 37 H 0.96994 * 120.00495 * 330.00350 * 23 22 21 38 38 H 1.08001 * 120.07085 * 180.31792 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4301 16 6 0.0485 3.3354 -2.6256 17 6 0.9379 3.3735 -3.7013 18 6 0.5699 3.9968 -4.8748 19 6 -0.6797 4.5842 -4.9880 20 17 -1.1363 5.3667 -6.4688 21 6 -1.5661 4.5496 -3.9245 22 16 -3.1530 5.3000 -4.0776 23 7 -2.9099 6.9282 -4.2580 24 8 -3.6988 4.8373 -5.3053 25 8 -3.8010 5.1275 -2.8249 26 6 -1.2116 3.9237 -2.7477 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 1.9122 2.9156 -3.6144 35 1 1.2567 4.0266 -5.7077 36 1 -3.5405 7.4589 -4.7694 37 1 -2.1369 7.3510 -3.8524 38 1 -1.9056 3.8928 -1.9208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798339274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:08 Heat of formation + Delta-G solvation = -118.741924 kcal Electronic energy + Delta-G solvation = -25753.365233 eV Core-core repulsion = 21747.616066 eV Total energy + Delta-G solvation = -4005.749167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44622 -39.79870 -38.40612 -37.74677 -37.02376 -36.97629 -34.49644 -34.14209 -33.31863 -32.54373 -31.86883 -28.96581 -25.67200 -24.90709 -24.37146 -22.33844 -21.40115 -20.69009 -19.98266 -18.61423 -18.43718 -18.08711 -17.76579 -17.31653 -16.98566 -16.75077 -16.37747 -16.10742 -15.83400 -15.32374 -15.09269 -14.85945 -14.60658 -13.99929 -13.88453 -13.53777 -13.31320 -13.29931 -13.23352 -13.19504 -13.12465 -12.90337 -12.74390 -12.68613 -12.60255 -12.17703 -12.07316 -11.94294 -11.59847 -11.36568 -11.07020 -10.91321 -10.80685 -10.53409 -10.16633 -9.69966 -8.15728 -6.33383 -0.88522 -0.69454 -0.32276 0.60402 1.46708 1.47160 1.51049 1.57493 2.04409 2.25021 2.41253 2.48297 2.61078 3.14460 3.20826 3.55490 3.69420 3.74415 4.01297 4.04413 4.42911 4.48119 4.54934 4.55524 4.70673 4.77058 4.90814 5.05119 5.22654 5.23920 5.29080 5.41332 5.50772 5.59051 5.77506 5.88817 6.15214 6.32390 6.73314 6.85732 7.30431 7.46180 8.89678 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.002774 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.389011 B =10090.021063 C =10854.204122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.257 1.257 13 N -0.692 5.692 14 C 0.538 3.462 15 O -0.578 6.578 16 C -0.152 4.152 17 C -0.009 4.009 18 C -0.119 4.119 19 C 0.066 3.934 20 Cl -0.021 7.021 21 C -0.681 4.681 22 S 2.720 3.280 23 N -1.225 6.225 24 O -0.968 6.968 25 O -0.991 6.991 26 C 0.031 3.969 27 H 0.026 0.974 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.434 0.566 37 H 0.430 0.570 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 12.713 -19.815 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.095 0.905 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.181 1.181 13 N -0.341 5.341 14 C 0.325 3.675 15 O -0.460 6.460 16 C -0.157 4.157 17 C -0.028 4.028 18 C -0.137 4.137 19 C 0.038 3.962 20 Cl 0.008 6.992 21 C -0.767 4.767 22 S 2.805 3.195 23 N -0.906 5.906 24 O -0.957 6.957 25 O -0.980 6.980 26 C 0.011 3.989 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.191 0.809 35 H 0.206 0.794 36 H 0.268 0.732 37 H 0.260 0.740 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.621 12.004 -19.074 23.489 hybrid contribution 1.689 0.149 0.449 1.754 sum -4.933 12.154 -18.625 22.780 Atomic orbital electron populations 1.21711 0.97254 0.99237 1.00223 1.21799 0.93483 0.99153 1.01593 1.18451 0.93932 0.89176 0.81007 0.98043 1.21560 0.91105 1.39040 1.06853 0.90518 1.25762 1.03237 0.94366 0.95064 1.70049 1.37115 1.38248 1.09886 0.85376 0.79166 0.77263 0.78714 1.20571 1.21316 1.18117 1.46166 1.14960 1.55049 1.17975 1.18537 0.82498 0.78978 0.87456 1.90771 1.52347 1.61345 1.41515 1.20248 0.96582 1.03588 0.95259 1.21998 0.99215 0.91491 0.90097 1.21536 0.95063 0.97537 0.99595 1.20864 0.94409 0.94064 0.86906 1.98464 1.91760 1.77600 1.31349 1.30529 1.25067 1.20879 1.00240 1.00964 0.72088 0.73429 0.73038 1.52611 1.40207 1.26628 1.71157 1.93612 1.76397 1.80524 1.45214 1.93612 1.72049 1.86013 1.46308 1.20993 0.94963 0.87987 0.94978 0.95465 0.93959 0.93565 0.93696 0.90832 0.92621 0.75800 0.80925 0.79365 0.73156 0.73973 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.52 71.98 0.61 -5.05 16 2 C -0.12 -5.79 5.45 30.59 0.17 -5.62 16 3 C 0.28 13.56 2.24 44.25 0.10 13.66 16 4 H 0.00 0.10 7.57 -2.39 -0.02 0.08 16 5 C -0.55 -27.33 8.73 25.60 0.22 -27.11 16 6 H 0.08 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -50.91 11.29 21.45 0.24 -50.66 16 9 Si 0.97 40.27 29.54 68.60 2.03 42.30 16 10 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 13 N -0.69 -26.42 4.97 -449.03 -2.23 -28.65 16 14 C 0.54 20.51 6.35 86.77 0.55 21.07 16 15 O -0.58 -27.13 13.49 -3.88 -0.05 -27.19 16 16 C -0.15 -4.29 5.87 -20.09 -0.12 -4.41 16 17 C -0.01 -0.17 9.54 22.52 0.21 0.04 16 18 C -0.12 -1.74 9.81 22.26 0.22 -1.52 16 19 C 0.07 1.17 6.31 22.40 0.14 1.31 16 20 Cl -0.02 -0.32 26.44 -2.72 -0.07 -0.40 16 21 C -0.68 -14.83 5.90 22.25 0.13 -14.70 16 22 S 2.72 56.26 5.60 -56.49 -0.32 55.94 16 23 N -1.22 -12.91 9.30 37.02 0.34 -12.57 16 24 O -0.97 -23.62 16.48 -128.00 -2.11 -25.73 16 25 O -0.99 -28.57 16.96 -128.00 -2.17 -30.74 16 26 C 0.03 0.86 9.09 22.52 0.20 1.07 16 27 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 28 H 0.04 1.82 5.66 -2.39 -0.01 1.80 16 29 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 32 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.41 12.20 6.57 -92.71 -0.61 11.59 16 34 H 0.17 2.36 6.40 -2.91 -0.02 2.34 16 35 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.43 2.60 8.96 -96.75 -0.87 1.73 16 37 H 0.43 2.68 8.96 -96.75 -0.87 1.81 16 38 H 0.15 4.62 6.92 -2.91 -0.02 4.60 16 Total: -1.00 -75.40 343.74 -2.63 -78.03 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -1.18 Total: 19.65 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 2.89 Total: -19.98 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -1.64 Total: -91.88 kcal Atomic # 8 Polarization: -79.33 SS G_CDS: -4.33 Total: -83.66 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 56.26 SS G_CDS: -0.32 Total: 55.94 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.07 Total: -0.40 kcal Total: -75.40 -2.63 -78.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798339274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.716 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds