Wall clock time and date at job start Sat Apr 11 2020 07:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47442 * 297.95873 * 3 2 1 5 5 C 1.37100 * 120.00333 * 264.97101 * 4 3 2 6 6 H 1.08005 * 120.00111 * 192.14087 * 5 4 3 7 7 C 1.38949 * 119.99899 * 12.13921 * 5 4 3 8 8 N 1.31409 * 119.99755 * 16.49201 * 7 5 4 9 9 Si 1.86797 * 119.99818 * 196.48810 * 7 5 4 10 10 H 1.48498 * 109.47291 * 84.98890 * 9 7 5 11 11 H 1.48501 * 109.47132 * 204.98541 * 9 7 5 12 12 H 1.48502 * 109.47312 * 324.98544 * 9 7 5 13 13 C 1.34778 * 119.99949 * 84.96789 * 4 3 2 14 14 O 1.21298 * 119.99645 * 0.02562 * 13 4 3 15 15 C 1.50702 * 120.00352 * 179.97438 * 13 4 3 16 16 C 1.50696 * 109.47195 * 180.02562 * 15 13 4 17 17 S 1.76164 * 125.94962 * 270.28049 * 16 15 13 18 18 C 1.70973 * 90.36065 * 180.02562 * 17 16 15 19 19 S 1.76196 * 124.95187 * 179.97438 * 18 17 16 20 20 C 1.81002 * 99.99645 * 179.71754 * 19 18 17 21 21 F 1.39902 * 109.46959 * 299.99595 * 20 19 18 22 22 F 1.39902 * 109.47433 * 59.99744 * 20 19 18 23 23 N 1.29757 * 110.08900 * 359.68906 * 18 17 16 24 24 C 1.32096 * 116.85629 * 0.24477 * 23 18 17 25 25 C 1.50705 * 122.70407 * 179.97438 * 24 23 18 26 26 H 4.40638 * 5.51383 * 179.97438 * 4 1 2 27 27 H 1.09005 * 109.46794 * 177.96215 * 3 2 1 28 28 H 1.09000 * 109.47292 * 57.96618 * 3 2 1 29 29 H 0.97000 * 119.99411 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46796 * 60.00712 * 15 13 4 31 31 H 1.08996 * 109.46977 * 300.00259 * 15 13 4 32 32 H 1.09006 * 109.47098 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.46602 * 90.02644 * 25 24 23 34 34 H 1.08998 * 109.47159 * 210.02346 * 25 24 23 35 35 H 1.08997 * 109.47356 * 330.02950 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6467 1.2200 5 6 3.4610 0.1114 2.3147 6 1 4.0009 -0.3330 3.1378 7 6 3.0973 1.4515 2.3652 8 7 2.1806 1.9148 1.5455 9 14 3.9112 2.5943 3.5985 10 1 5.1842 3.1080 3.0321 11 1 3.0045 3.7333 3.8912 12 1 4.1920 1.8502 4.8526 13 6 3.2634 -1.9875 1.2662 14 8 2.9751 -2.6581 0.2974 15 6 3.7667 -2.6534 2.5209 16 6 3.8178 -4.1450 2.3121 17 16 2.5113 -5.2805 2.6396 18 6 3.4947 -6.5787 2.1192 19 16 2.9993 -8.2692 2.0838 20 6 4.5091 -9.0255 1.4324 21 9 4.7925 -8.4897 0.1715 22 9 5.5743 -8.7633 2.3007 23 7 4.6570 -6.1366 1.7485 24 6 4.8576 -4.8343 1.8415 25 6 6.1571 -4.1805 1.4480 26 1 -1.0498 0.0001 0.0003 27 1 3.0088 1.0279 -0.0365 28 1 3.0096 -0.5443 -0.8712 29 1 1.9265 2.8502 1.5811 30 1 3.0946 -2.4249 3.3481 31 1 4.7660 -2.2848 2.7520 32 1 4.3678 -10.1030 1.3463 33 1 6.1185 -3.8999 0.3955 34 1 6.3143 -3.2895 2.0560 35 1 6.9784 -4.8790 1.6079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798803610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:12 Heat of formation + Delta-G solvation = -12.854668 kcal Electronic energy + Delta-G solvation = -25083.561988 eV Core-core repulsion = 20973.360627 eV Total energy + Delta-G solvation = -4110.201361 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.036 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.19393 -47.28817 -39.77424 -38.58060 -35.26897 -32.96939 -31.95701 -31.43990 -29.68208 -27.24483 -26.88997 -25.76847 -24.87291 -23.87111 -19.73192 -19.24046 -18.88569 -17.95158 -17.75004 -17.51583 -17.39795 -16.71770 -16.34047 -15.76474 -14.85351 -14.52614 -14.34072 -14.25782 -14.05533 -13.96320 -13.58614 -13.41206 -13.00155 -12.80840 -12.71037 -12.52243 -12.24312 -12.13124 -11.95222 -11.60018 -11.40938 -11.13357 -10.82868 -10.78176 -10.65329 -10.54299 -9.72596 -9.62880 -9.51470 -9.39512 -8.99765 -8.76760 -8.55498 -8.04475 -7.80301 -6.47629 -4.06627 0.45933 0.75607 1.17931 1.59054 1.88970 2.87979 3.01966 3.12714 3.14540 3.54598 3.62362 3.85070 4.04915 4.17855 4.22167 4.26575 4.66391 4.84123 4.92895 5.20334 5.37791 5.63354 5.75112 5.85626 5.94493 6.04291 6.09257 6.20579 6.48554 6.65584 6.96616 7.15047 7.23175 7.53681 7.68758 8.19689 8.89419 8.92635 9.30720 9.71574 10.49804 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.003007 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.961780 B = 9308.041200 C = 9834.832849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.098 4.098 3 C 0.236 3.764 4 N -0.435 5.435 5 C -0.344 4.344 6 H 0.103 0.897 7 C 0.037 3.963 8 N -0.856 5.856 9 Si 0.923 3.077 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.459 3.541 14 O -0.593 6.593 15 C -0.051 4.051 16 C -0.163 4.163 17 S 0.203 5.797 18 C -0.020 4.020 19 S -0.023 6.023 20 C 0.287 3.713 21 F -0.172 7.172 22 F -0.174 7.174 23 N -0.444 5.444 24 C 0.070 3.930 25 C -0.073 4.073 26 H 0.198 0.802 27 H 0.123 0.877 28 H 0.063 0.937 29 H 0.272 0.728 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -14.666 3.160 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.099 4.099 3 C 0.113 3.887 4 N -0.153 5.153 5 C -0.471 4.471 6 H 0.121 0.879 7 C -0.169 4.169 8 N -0.493 5.493 9 Si 0.750 3.250 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.246 3.754 14 O -0.479 6.479 15 C -0.093 4.093 16 C -0.287 4.287 17 S 0.456 5.544 18 C -0.405 4.405 19 S 0.203 5.797 20 C 0.122 3.878 21 F -0.153 7.153 22 F -0.155 7.155 23 N -0.163 5.163 24 C -0.065 4.065 25 C -0.132 4.132 26 H 0.215 0.785 27 H 0.141 0.859 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.165 0.835 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.584 -15.679 3.121 16.065 hybrid contribution 1.885 1.808 0.110 2.614 sum 3.469 -13.871 3.230 14.658 Atomic orbital electron populations 1.24238 0.95389 1.06236 1.03885 1.23265 0.94429 0.95368 0.96846 1.18357 0.84041 0.99922 0.86340 1.43705 1.55397 1.03822 1.12409 1.19693 1.36256 0.92605 0.98595 0.87933 1.25280 0.95200 0.98109 0.98261 1.70088 1.25853 1.16034 1.37335 0.85998 0.79048 0.79724 0.80253 1.20049 1.20892 1.19432 1.19791 0.84090 0.82418 0.89063 1.90592 1.56218 1.63503 1.37585 1.19980 1.04318 0.85780 0.99213 1.25391 0.95265 1.00673 1.07368 1.83738 1.16099 0.94957 1.59576 1.27281 0.98393 1.03222 1.11587 1.86217 1.18408 0.93728 1.81395 1.23870 0.86818 1.00298 0.76782 1.93157 1.94074 1.88169 1.39919 1.93135 1.58096 1.95474 1.68839 1.66755 1.17424 1.14928 1.17152 1.19945 0.98316 0.87001 1.01195 1.20324 0.91040 0.99409 1.02426 0.78494 0.85930 0.91907 0.91744 0.88355 0.87476 0.83470 0.90373 0.90473 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.30 19.25 29.55 0.57 -5.73 16 2 C -0.10 -2.39 11.86 -37.13 -0.44 -2.83 16 3 C 0.24 5.64 5.08 -6.83 -0.03 5.60 16 4 N -0.44 -10.42 2.60 -117.93 -0.31 -10.73 16 5 C -0.34 -8.06 9.27 -14.93 -0.14 -8.19 16 6 H 0.10 2.19 6.45 -52.48 -0.34 1.86 16 7 C 0.04 0.87 5.07 -17.47 -0.09 0.78 16 8 N -0.86 -21.13 9.04 55.50 0.50 -20.62 16 9 Si 0.92 18.22 29.58 -169.99 -5.03 13.19 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 13 C 0.46 10.54 7.58 -10.98 -0.08 10.45 16 14 O -0.59 -15.23 15.70 5.54 0.09 -15.14 16 15 C -0.05 -0.94 4.31 -29.04 -0.13 -1.06 16 16 C -0.16 -2.95 5.06 -36.02 -0.18 -3.13 16 17 S 0.20 3.33 23.19 -107.50 -2.49 0.83 16 18 C -0.02 -0.32 7.29 51.89 0.38 0.06 16 19 S -0.02 -0.28 22.55 -107.50 -2.42 -2.70 16 20 C 0.29 3.07 5.47 101.05 0.55 3.62 16 21 F -0.17 -2.36 16.69 2.25 0.04 -2.32 16 22 F -0.17 -2.24 16.70 2.25 0.04 -2.20 16 23 N -0.44 -7.89 8.86 -10.94 -0.10 -7.98 16 24 C 0.07 1.24 6.74 -84.19 -0.57 0.67 16 25 C -0.07 -1.10 10.05 36.01 0.36 -0.74 16 26 H 0.20 3.63 7.80 -54.10 -0.42 3.21 16 27 H 0.12 2.97 5.91 -51.93 -0.31 2.67 16 28 H 0.06 1.46 7.58 -51.93 -0.39 1.07 16 29 H 0.27 6.43 8.31 -40.82 -0.34 6.10 16 30 H 0.10 1.75 8.06 -51.93 -0.42 1.33 16 31 H 0.11 1.77 6.34 -51.93 -0.33 1.44 16 32 H 0.15 0.81 8.14 -51.91 -0.42 0.38 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.04 6.70 -51.93 -0.35 0.70 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -30.73 344.85 -7.25 -37.98 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -2.96 Total: 4.99 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 0.20 Total: -0.49 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.10 Total: -39.33 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.08 Total: -4.52 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -4.92 Total: -1.87 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.73 -7.25 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.126 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds