Wall clock time and date at job start Sat Apr 11 2020 07:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47442 * 297.95873 * 3 2 1 5 5 C 1.37100 * 120.00333 * 264.97101 * 4 3 2 6 6 H 1.08005 * 120.00111 * 192.14087 * 5 4 3 7 7 C 1.38949 * 119.99899 * 12.13921 * 5 4 3 8 8 N 1.31409 * 119.99755 * 16.49201 * 7 5 4 9 9 Si 1.86797 * 119.99818 * 196.48810 * 7 5 4 10 10 H 1.48498 * 109.47291 * 84.98890 * 9 7 5 11 11 H 1.48501 * 109.47132 * 204.98541 * 9 7 5 12 12 H 1.48502 * 109.47312 * 324.98544 * 9 7 5 13 13 C 1.34778 * 119.99949 * 84.96789 * 4 3 2 14 14 O 1.21298 * 119.99645 * 0.02562 * 13 4 3 15 15 C 1.50702 * 120.00352 * 179.97438 * 13 4 3 16 16 C 1.50696 * 109.47195 * 180.02562 * 15 13 4 17 17 S 1.76164 * 125.94962 * 270.28049 * 16 15 13 18 18 C 1.70973 * 90.36065 * 180.02562 * 17 16 15 19 19 S 1.76196 * 124.95187 * 179.97438 * 18 17 16 20 20 C 1.81002 * 99.99645 * 179.71754 * 19 18 17 21 21 F 1.39902 * 109.46959 * 299.99595 * 20 19 18 22 22 F 1.39902 * 109.47433 * 59.99744 * 20 19 18 23 23 N 1.29757 * 110.08900 * 359.68906 * 18 17 16 24 24 C 1.32096 * 116.85629 * 0.24477 * 23 18 17 25 25 C 1.50705 * 122.70407 * 179.97438 * 24 23 18 26 26 H 4.40638 * 5.51383 * 179.97438 * 4 1 2 27 27 H 1.09005 * 109.46794 * 177.96215 * 3 2 1 28 28 H 1.09000 * 109.47292 * 57.96618 * 3 2 1 29 29 H 0.97000 * 119.99411 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46796 * 60.00712 * 15 13 4 31 31 H 1.08996 * 109.46977 * 300.00259 * 15 13 4 32 32 H 1.09006 * 109.47098 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.46602 * 90.02644 * 25 24 23 34 34 H 1.08998 * 109.47159 * 210.02346 * 25 24 23 35 35 H 1.08997 * 109.47356 * 330.02950 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6467 1.2200 5 6 3.4610 0.1114 2.3147 6 1 4.0009 -0.3330 3.1378 7 6 3.0973 1.4515 2.3652 8 7 2.1806 1.9148 1.5455 9 14 3.9112 2.5943 3.5985 10 1 5.1842 3.1080 3.0321 11 1 3.0045 3.7333 3.8912 12 1 4.1920 1.8502 4.8526 13 6 3.2634 -1.9875 1.2662 14 8 2.9751 -2.6581 0.2974 15 6 3.7667 -2.6534 2.5209 16 6 3.8178 -4.1450 2.3121 17 16 2.5113 -5.2805 2.6396 18 6 3.4947 -6.5787 2.1192 19 16 2.9993 -8.2692 2.0838 20 6 4.5091 -9.0255 1.4324 21 9 4.7925 -8.4897 0.1715 22 9 5.5743 -8.7633 2.3007 23 7 4.6570 -6.1366 1.7485 24 6 4.8576 -4.8343 1.8415 25 6 6.1571 -4.1805 1.4480 26 1 -1.0498 0.0001 0.0003 27 1 3.0088 1.0279 -0.0365 28 1 3.0096 -0.5443 -0.8712 29 1 1.9265 2.8502 1.5811 30 1 3.0946 -2.4249 3.3481 31 1 4.7660 -2.2848 2.7520 32 1 4.3678 -10.1030 1.3463 33 1 6.1185 -3.8999 0.3955 34 1 6.3143 -3.2895 2.0560 35 1 6.9784 -4.8790 1.6079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798803610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:11 Heat of formation + Delta-G solvation = -29.726570 kcal Electronic energy + Delta-G solvation = -25084.293609 eV Core-core repulsion = 20973.360627 eV Total energy + Delta-G solvation = -4110.932981 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.036 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.12538 -48.24001 -41.16120 -40.26830 -37.08011 -34.42380 -33.73897 -33.21649 -31.06944 -28.61127 -28.06312 -27.23648 -26.41474 -25.37966 -21.38028 -20.42170 -20.28931 -19.43833 -18.85325 -18.53259 -18.45553 -18.41936 -18.01968 -17.05762 -16.29323 -16.23750 -16.00805 -15.80694 -15.19081 -15.05919 -14.66143 -14.54965 -14.52015 -14.46938 -14.07549 -13.77994 -13.73406 -13.57069 -13.29675 -13.15662 -12.81076 -12.74482 -12.45816 -12.13531 -12.09646 -11.71349 -11.29235 -11.24479 -10.97811 -10.90729 -10.61863 -10.37530 -10.21507 -9.88187 -8.95378 -8.25233 -5.90328 -0.58388 -0.48902 0.09986 0.37343 0.59905 1.44552 1.52361 1.55945 1.62186 1.87701 2.09905 2.33759 2.38756 2.85295 3.10080 3.19279 3.33622 3.38246 3.52390 3.77624 3.90705 4.07141 4.33567 4.46008 4.57256 4.71845 4.74584 4.82262 4.88563 5.08947 5.25089 5.39090 5.45490 5.74213 6.38099 6.40319 7.07766 7.11032 7.51945 7.92646 8.72419 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.003007 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.961780 B = 9308.041200 C = 9834.832849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.145 4.145 3 C 0.237 3.763 4 N -0.445 5.445 5 C -0.360 4.360 6 H 0.122 0.878 7 C -0.003 4.003 8 N -0.884 5.884 9 Si 0.991 3.009 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.257 1.257 13 C 0.451 3.549 14 O -0.627 6.627 15 C -0.038 4.038 16 C -0.191 4.191 17 S 0.205 5.795 18 C -0.025 4.025 19 S 0.009 5.991 20 C 0.279 3.721 21 F -0.191 7.191 22 F -0.186 7.186 23 N -0.465 5.465 24 C 0.062 3.938 25 C -0.071 4.071 26 H 0.235 0.765 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.270 0.730 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.210 0.790 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 -15.879 4.506 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.146 4.146 3 C 0.115 3.885 4 N -0.162 5.162 5 C -0.486 4.486 6 H 0.139 0.861 7 C -0.206 4.206 8 N -0.521 5.521 9 Si 0.815 3.185 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.181 1.181 13 C 0.240 3.760 14 O -0.515 6.515 15 C -0.080 4.080 16 C -0.315 4.315 17 S 0.458 5.542 18 C -0.410 4.410 19 S 0.234 5.766 20 C 0.115 3.885 21 F -0.172 7.172 22 F -0.168 7.168 23 N -0.184 5.184 24 C -0.072 4.072 25 C -0.130 4.130 26 H 0.252 0.748 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.226 0.774 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.838 -16.895 4.480 17.576 hybrid contribution 1.719 2.056 -0.367 2.705 sum 3.557 -14.839 4.113 15.804 Atomic orbital electron populations 1.25170 0.96436 1.04439 1.02137 1.23675 0.95304 0.97076 0.98560 1.18228 0.84381 0.99314 0.86591 1.43930 1.55382 1.04436 1.12492 1.20162 1.36513 0.93007 0.98929 0.86076 1.26109 0.95343 0.99239 0.99924 1.70217 1.27001 1.16051 1.38869 0.84965 0.77701 0.77373 0.78487 1.19755 1.21737 1.18086 1.20507 0.83403 0.82024 0.90051 1.90555 1.57592 1.64132 1.39230 1.19847 1.05256 0.86015 0.96858 1.25364 0.96196 1.00547 1.09388 1.83605 1.15875 0.95045 1.59665 1.28013 0.97811 1.05466 1.09741 1.86081 1.19227 0.90447 1.80808 1.24612 0.85523 1.02898 0.75432 1.93120 1.94141 1.88745 1.41213 1.93109 1.58706 1.95735 1.69233 1.66856 1.18199 1.14939 1.18439 1.20361 0.99059 0.87384 1.00376 1.20378 0.90575 1.00233 1.01853 0.74818 0.86814 0.92591 0.92013 0.87699 0.85477 0.77380 0.91517 0.89015 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.76 19.25 74.32 1.43 -10.33 16 2 C -0.14 -7.20 11.86 31.12 0.37 -6.84 16 3 C 0.24 11.72 5.08 84.57 0.43 12.15 16 4 N -0.45 -21.55 2.60 -645.41 -1.68 -23.23 16 5 C -0.36 -16.67 9.27 84.04 0.78 -15.89 16 6 H 0.12 5.01 6.45 -2.91 -0.02 4.99 16 7 C 0.00 -0.16 5.07 84.93 0.43 0.27 16 8 N -0.88 -43.94 9.04 21.66 0.20 -43.74 16 9 Si 0.99 36.70 29.58 68.60 2.03 38.73 16 10 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 11 H -0.29 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 13 C 0.45 20.93 7.58 87.66 0.66 21.59 16 14 O -0.63 -32.93 15.70 -3.08 -0.05 -32.97 16 15 C -0.04 -1.39 4.31 29.10 0.13 -1.26 16 16 C -0.19 -6.85 5.06 24.58 0.12 -6.72 16 17 S 0.20 6.62 23.19 -56.49 -1.31 5.31 16 18 C -0.03 -0.80 7.29 130.55 0.95 0.15 16 19 S 0.01 0.19 22.55 -56.49 -1.27 -1.09 16 20 C 0.28 5.23 5.47 113.37 0.62 5.85 16 21 F -0.19 -4.92 16.69 44.97 0.75 -4.17 16 22 F -0.19 -4.41 16.70 44.97 0.75 -3.66 16 23 N -0.47 -16.20 8.86 -188.53 -1.67 -17.87 16 24 C 0.06 2.19 6.74 41.41 0.28 2.47 16 25 C -0.07 -2.11 10.05 71.24 0.72 -1.40 16 26 H 0.24 8.12 7.80 -4.42 -0.03 8.08 16 27 H 0.11 5.73 5.91 -2.38 -0.01 5.72 16 28 H 0.06 2.75 7.58 -2.39 -0.02 2.73 16 29 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 30 H 0.10 3.66 8.06 -2.39 -0.02 3.64 16 31 H 0.13 4.04 6.34 -2.39 -0.02 4.03 16 32 H 0.21 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.38 6.70 -2.39 -0.02 2.37 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -66.95 344.85 5.82 -61.13 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.16 Total: 21.51 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.92 Total: 0.05 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -3.15 Total: -84.84 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 1.50 Total: -7.83 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -2.58 Total: 4.22 kcal Total: -66.95 5.82 -61.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.403 kcal (2) G-P(sol) polarization free energy of solvation -66.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds