Wall clock time and date at job start Sat Apr 11 2020 07:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48500 * 109.46790 * 270.00094 * 3 2 1 5 5 H 1.48506 * 109.47203 * 29.99789 * 3 2 1 6 6 H 1.48492 * 109.47320 * 150.00122 * 3 2 1 7 7 C 1.38797 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99960 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99965 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00089 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47128 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46791 * 179.97438 * 12 11 10 14 14 C 1.34674 * 116.99713 * 179.97438 * 13 12 11 15 15 O 1.21439 * 119.99803 * 0.02562 * 14 13 12 16 16 C 1.48044 * 120.00120 * 180.02562 * 14 13 12 17 17 C 1.39880 * 120.92632 * 0.02562 * 16 14 13 18 18 C 1.38127 * 118.99739 * 179.97438 * 17 16 14 19 19 N 1.31825 * 120.90318 * 359.97315 * 18 17 16 20 20 C 1.31797 * 122.05972 * 0.02953 * 19 18 17 21 21 S 1.76200 * 119.54870 * 179.97438 * 20 19 18 22 22 N 1.65597 * 107.22113 * 89.99599 * 21 20 19 23 23 O 1.42100 * 106.40337 * 336.45305 * 21 20 19 24 24 O 1.42104 * 106.39700 * 203.53465 * 21 20 19 25 25 C 1.38176 * 120.89697 * 0.26618 * 20 19 18 26 26 H 0.97002 * 120.00335 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47227 * 59.99653 * 10 9 7 28 28 H 1.09003 * 109.47099 * 299.99493 * 10 9 7 29 29 H 1.08997 * 109.47189 * 59.99734 * 11 10 9 30 30 H 1.09003 * 109.46727 * 299.99826 * 11 10 9 31 31 H 1.09002 * 109.47118 * 60.00280 * 12 11 10 32 32 H 1.08993 * 109.47098 * 300.00122 * 12 11 10 33 33 H 1.07996 * 120.50261 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.54493 * 179.97438 * 18 17 16 35 35 H 0.97001 * 120.00224 * 240.00401 * 22 21 20 36 36 H 0.97005 * 120.00050 * 59.72170 * 22 21 20 37 37 H 1.08001 * 120.49669 * 179.73368 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0025 11 6 5.5958 -3.2362 0.0026 12 6 5.8615 -4.7430 0.0044 13 8 7.2937 -4.9818 0.0039 14 6 7.6994 -6.2660 0.0058 15 8 6.8794 -7.1618 0.0074 16 6 9.1449 -6.5857 0.0060 17 6 10.1059 -5.5694 0.0048 18 6 11.4438 -5.9129 0.0055 19 7 11.8183 -7.1768 0.0080 20 6 10.9460 -8.1649 0.0092 21 16 11.5201 -9.8308 0.0117 22 7 11.6795 -10.2919 1.5942 23 8 12.8324 -9.8038 -0.5325 24 8 10.4693 -10.6180 -0.5317 25 6 9.5876 -7.9121 0.0024 26 1 -0.4851 0.8400 0.0004 27 1 3.6440 -3.4321 -0.8873 28 1 3.6434 -3.4309 0.8927 29 1 6.0388 -2.7885 0.8922 30 1 6.0386 -2.7898 -0.8878 31 1 5.4185 -5.1911 -0.8850 32 1 5.4187 -5.1890 0.8949 33 1 9.8065 -4.5318 0.0032 34 1 12.1933 -5.1353 0.0041 35 1 12.5448 -10.5694 1.9337 36 1 10.9085 -10.2807 2.1827 37 1 8.8785 -8.7268 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805532002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:27 Heat of formation + Delta-G solvation = -162.102608 kcal Electronic energy + Delta-G solvation = -23855.457227 eV Core-core repulsion = 19849.871506 eV Total energy + Delta-G solvation = -4005.585721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.054 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12734 -40.93088 -38.44414 -38.04105 -37.10119 -35.09151 -34.69308 -34.18503 -34.13726 -32.89926 -28.50789 -27.85573 -26.32755 -25.25574 -23.07653 -22.69209 -20.87093 -19.95097 -19.55065 -18.91790 -18.45025 -18.21236 -17.92064 -17.51045 -17.34837 -17.11089 -17.05298 -16.19260 -16.18070 -15.82745 -15.51912 -15.35388 -14.96256 -14.61604 -14.24938 -14.08341 -13.74799 -13.40149 -13.37688 -13.34221 -13.25742 -13.06117 -12.67736 -12.63151 -12.49327 -12.37702 -12.06187 -11.76106 -11.63029 -11.56815 -11.43782 -11.17256 -10.95293 -10.84764 -10.61423 -9.01034 -8.52648 -6.24922 -0.98817 -0.78953 -0.59843 0.97518 1.13364 1.24463 1.32916 1.47889 1.75508 1.96415 2.24000 2.24309 2.63284 2.64504 2.85533 2.87261 3.14570 3.43544 3.52345 3.73052 3.80285 3.80771 3.88946 4.06028 4.17330 4.26117 4.33628 4.47999 4.63278 4.63440 4.97130 4.97813 5.14056 5.17820 5.23234 5.68424 6.09713 6.25180 6.30539 6.33418 6.90857 8.60308 Molecular weight = 346.05amu Principal moments of inertia in cm(-1) A = 0.036215 B = 0.001622 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.976353 B =17263.376892 C =17836.900265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.225 1.225 7 C -0.527 4.527 8 H 0.050 0.950 9 S -0.203 6.203 10 C -0.076 4.076 11 C -0.087 4.087 12 C 0.078 3.922 13 O -0.340 6.340 14 C 0.511 3.489 15 O -0.520 6.520 16 C -0.105 4.105 17 C -0.043 4.043 18 C 0.083 3.917 19 N -0.387 5.387 20 C -0.463 4.463 21 S 2.737 3.263 22 N -1.219 6.219 23 O -0.967 6.967 24 O -0.974 6.974 25 C -0.036 4.036 26 H 0.277 0.723 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.190 0.810 34 H 0.218 0.782 35 H 0.436 0.564 36 H 0.432 0.568 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.295 -16.082 4.600 33.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.148 1.148 7 C -0.675 4.675 8 H 0.069 0.931 9 S 0.025 5.975 10 C -0.225 4.225 11 C -0.126 4.126 12 C 0.003 3.997 13 O -0.256 6.256 14 C 0.355 3.645 15 O -0.409 6.409 16 C -0.115 4.115 17 C -0.063 4.063 18 C -0.078 4.078 19 N -0.098 5.098 20 C -0.679 4.679 21 S 2.818 3.182 22 N -0.899 5.899 23 O -0.957 6.957 24 O -0.962 6.962 25 C -0.058 4.058 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.208 0.792 34 H 0.235 0.765 35 H 0.269 0.731 36 H 0.262 0.738 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 30.561 -16.013 3.681 34.698 hybrid contribution -2.988 0.277 0.514 3.045 sum 27.572 -15.736 4.196 32.023 Atomic orbital electron populations 1.70043 1.07762 1.29166 1.49030 1.25816 0.95432 1.02918 0.92683 0.85698 0.80845 0.78441 0.80257 1.18590 1.18922 1.14792 1.22368 0.90250 0.96294 1.58573 0.93121 1.83768 1.07302 1.08858 1.97596 1.22984 0.99006 0.96208 1.04283 1.21158 0.92817 0.93119 1.05464 1.23172 0.75803 0.97161 1.03583 1.86449 1.28896 1.26924 1.83290 1.21148 0.89386 0.81286 0.72656 1.90885 1.55562 1.48468 1.45970 1.19591 0.90270 0.95280 1.06339 1.23289 0.93279 1.02174 0.87589 1.23894 0.95609 0.93557 0.94751 1.67676 1.37290 1.01128 1.03728 1.33745 0.97286 1.23244 1.13626 1.00822 0.72318 0.71878 0.73214 1.52807 1.22053 1.83722 1.31342 1.93580 1.38411 1.86404 1.77270 1.93654 1.59557 1.65693 1.77336 1.22236 0.96159 0.97814 0.89548 0.91398 0.91143 0.90969 0.89115 0.89265 0.90528 0.90252 0.79246 0.76517 0.73066 0.73769 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.89 13.97 21.65 0.30 -55.59 16 2 C 0.04 2.08 5.50 84.86 0.47 2.55 16 3 Si 0.93 42.57 27.74 68.60 1.90 44.47 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.22 -9.76 6.74 99.48 0.67 -9.09 16 7 C -0.53 -30.19 10.04 67.95 0.68 -29.51 16 8 H 0.05 3.17 8.03 -2.91 -0.02 3.15 16 9 S -0.20 -9.16 19.41 -56.49 -1.10 -10.25 16 10 C -0.08 -2.63 5.67 71.98 0.41 -2.22 16 11 C -0.09 -2.16 5.60 30.60 0.17 -1.98 16 12 C 0.08 1.72 5.47 71.98 0.39 2.12 16 13 O -0.34 -6.75 9.58 -55.83 -0.53 -7.28 16 14 C 0.51 10.70 7.92 70.42 0.56 11.26 16 15 O -0.52 -13.96 16.24 20.03 0.33 -13.64 16 16 C -0.11 -1.68 5.91 -19.89 -0.12 -1.80 16 17 C -0.04 -0.42 9.71 22.64 0.22 -0.20 16 18 C 0.08 0.75 11.17 84.67 0.95 1.70 16 19 N -0.39 -5.67 10.08 -193.47 -1.95 -7.62 16 20 C -0.46 -6.92 6.86 84.68 0.58 -6.33 16 21 S 2.74 37.72 6.34 -56.49 -0.36 37.36 16 22 N -1.22 -5.60 9.52 37.02 0.35 -5.25 16 23 O -0.97 -19.57 17.85 -128.00 -2.28 -21.86 16 24 O -0.97 -19.17 17.25 -128.00 -2.21 -21.38 16 25 C -0.04 -0.58 9.13 22.64 0.21 -0.38 16 26 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.07 2.47 8.14 -2.40 -0.02 2.45 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.19 0.89 7.71 -2.91 -0.02 0.87 16 34 H 0.22 0.22 8.06 -2.91 -0.02 0.19 16 35 H 0.44 0.46 8.96 -96.74 -0.87 -0.41 16 36 H 0.43 0.14 8.96 -96.74 -0.87 -0.72 16 37 H 0.17 2.63 7.29 -2.91 -0.02 2.61 16 Total: -1.00 -82.19 358.08 -1.66 -83.85 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -0.63 Total: 1.99 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.52 Total: -24.80 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -1.30 Total: -68.46 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -4.70 Total: -64.16 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.90 Total: 44.47 kcal Atomic # 16 Polarization: 28.56 SS G_CDS: -1.45 Total: 27.11 kcal Total: -82.19 -1.66 -83.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805532002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.254 kcal (2) G-P(sol) polarization free energy of solvation -82.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds