Wall clock time and date at job start Sat Apr 11 2020 07:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47632 * 300.00714 * 3 2 1 6 6 H 1.48511 * 109.47039 * 60.00468 * 3 2 1 7 7 C 1.37877 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47159 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72352 * 13 12 11 16 16 S 1.65603 * 120.00017 * 180.27533 * 15 13 12 17 17 O 1.42098 * 106.40252 * 178.54235 * 16 15 13 18 18 O 1.42096 * 106.40197 * 311.46232 * 16 15 13 19 19 C 1.76202 * 107.21792 * 65.00345 * 16 15 13 20 20 C 1.38228 * 120.41163 * 269.72982 * 19 16 15 21 21 N 1.31853 * 120.79258 * 179.70300 * 20 19 16 22 22 C 1.31878 * 121.73570 * 0.58132 * 21 20 19 23 23 C 1.38307 * 120.74604 * 359.70041 * 22 21 20 24 24 Cl 1.73599 * 120.42974 * 179.97438 * 23 22 21 25 25 C 1.38608 * 120.41234 * 89.99662 * 19 16 15 26 26 H 0.96995 * 120.00587 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47277 * 59.99958 * 9 7 2 28 28 H 1.09002 * 109.46506 * 299.99678 * 9 7 2 29 29 H 1.08998 * 109.47269 * 60.00054 * 10 9 7 30 30 H 1.09003 * 109.46642 * 299.99381 * 10 9 7 31 31 H 1.09004 * 109.47131 * 59.99670 * 11 10 9 32 32 H 1.09000 * 109.47504 * 299.99974 * 11 10 9 33 33 H 1.09004 * 109.47066 * 60.00025 * 12 11 10 34 34 H 1.08994 * 109.47405 * 299.99855 * 12 11 10 35 35 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 36 36 H 1.08007 * 119.60410 * 359.96610 * 20 19 16 37 37 H 1.08005 * 119.62357 * 179.72812 * 22 21 20 38 38 H 1.08000 * 120.79205 * 359.97438 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1499 -0.0005 13 6 1.7212 -7.4551 0.0007 14 8 0.5084 -7.4551 0.0016 15 7 2.3951 -8.6222 -0.0052 16 16 1.5671 -10.0564 -0.0107 17 8 2.5466 -11.0851 -0.0510 18 8 0.5860 -9.9572 1.0123 19 6 0.6888 -10.1457 -1.5356 20 6 -0.5973 -9.6483 -1.6325 21 7 -1.2593 -9.7059 -2.7713 22 6 -0.7326 -10.2456 -3.8533 23 6 0.5474 -10.7690 -3.8310 24 17 1.2323 -11.4780 -5.2599 25 6 1.2767 -10.7206 -2.6514 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8898 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 0.8534 -5.0450 -0.8896 32 1 0.8541 -5.0446 0.8903 33 1 3.1020 -6.0921 0.8890 34 1 3.1006 -6.0923 -0.8909 35 1 3.3651 -8.6223 -0.0061 36 1 -1.0639 -9.2032 -0.7660 37 1 -1.3072 -10.2787 -4.7672 38 1 2.2787 -11.1209 -2.6039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805902581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:40 Heat of formation + Delta-G solvation = -98.802712 kcal Electronic energy + Delta-G solvation = -24858.435198 eV Core-core repulsion = 20853.550660 eV Total energy + Delta-G solvation = -4004.884538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83322 -40.39053 -37.79799 -37.26993 -36.46490 -35.13225 -34.86239 -33.37060 -32.70445 -31.86132 -29.92059 -26.00438 -24.90226 -24.39559 -23.17645 -21.21730 -20.39285 -20.08455 -18.99921 -18.28922 -17.70706 -17.35687 -17.21511 -16.21847 -16.16906 -15.60922 -15.43495 -15.05964 -14.74547 -14.38236 -14.31125 -14.01191 -13.50775 -13.25329 -12.70654 -12.68924 -12.65669 -12.53950 -12.50394 -12.14376 -11.86213 -11.85383 -11.71402 -11.29786 -11.06804 -10.96880 -10.66386 -10.63950 -10.52476 -10.41275 -10.18938 -9.74939 -9.70358 -9.32127 -9.03970 -8.35025 -5.99503 -4.02257 -0.46918 -0.07734 0.33173 1.32904 1.80442 2.19969 2.79936 3.10102 3.30380 3.37942 3.41298 3.61263 3.83071 3.93798 4.08565 4.19565 4.36525 4.45692 4.52791 4.58149 5.03914 5.09073 5.09806 5.11386 5.36179 5.59461 5.69958 5.97642 6.09898 6.20957 6.39701 6.70677 6.88681 7.06814 7.11413 7.21463 7.68914 7.83210 8.01087 8.42520 9.05601 9.61874 11.11809 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.002224 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.520416 B =12585.571530 C =13530.444773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.139 4.139 13 C 0.534 3.466 14 O -0.485 6.485 15 N -1.055 6.055 16 S 2.688 3.312 17 O -0.941 6.941 18 O -0.918 6.918 19 C -0.728 4.728 20 C 0.228 3.772 21 N -0.476 5.476 22 C 0.175 3.825 23 C -0.119 4.119 24 Cl -0.041 7.041 25 C 0.035 3.965 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.437 0.563 36 H 0.190 0.810 37 H 0.176 0.824 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -26.521 -6.887 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.148 4.148 12 C -0.181 4.181 13 C 0.322 3.678 14 O -0.355 6.355 15 N -0.822 5.822 16 S 2.777 3.223 17 O -0.931 6.931 18 O -0.908 6.908 19 C -0.816 4.816 20 C 0.069 3.931 21 N -0.185 5.185 22 C 0.017 3.983 23 C -0.149 4.149 24 Cl -0.012 7.012 25 C 0.008 3.992 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.274 0.726 36 H 0.207 0.793 37 H 0.193 0.807 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.588 -26.717 -6.413 27.709 hybrid contribution 1.704 0.715 -0.880 2.046 sum 5.292 -26.003 -7.293 27.520 Atomic orbital electron populations 1.69975 1.06055 1.26486 1.50868 1.25043 0.94840 0.99279 0.95414 0.86558 0.80055 0.83905 0.77579 1.19786 1.21057 1.21023 1.21298 0.93001 0.91145 1.50476 0.92695 1.19102 0.94036 0.91256 0.97392 1.21651 0.99139 0.93727 1.00283 1.21567 0.97050 0.92705 1.03449 1.21986 1.00425 0.90445 1.05246 1.21312 0.88398 0.85922 0.72186 1.90854 1.13341 1.86890 1.44416 1.55148 1.22010 1.23523 1.81558 1.02509 0.73718 0.72417 0.73689 1.93650 1.59788 1.52872 1.86775 1.93678 1.60077 1.84892 1.52156 1.31840 1.10955 1.16711 1.22084 1.23047 0.88050 0.85809 0.96150 1.68136 1.35997 1.15309 0.99070 1.23354 0.90166 0.87180 0.97634 1.22092 0.96999 1.05206 0.90607 1.98411 1.84388 1.82029 1.36376 1.21279 0.99667 0.89127 0.89108 0.93044 0.96573 0.96492 0.93230 0.93345 0.91503 0.91200 0.87700 0.87886 0.72602 0.79300 0.80679 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.11 -2.07 5.15 -26.73 -0.14 -2.21 16 11 C -0.11 -1.69 4.50 -26.74 -0.12 -1.81 16 12 C -0.14 -1.41 5.70 -27.88 -0.16 -1.57 16 13 C 0.53 5.65 7.66 -10.98 -0.08 5.57 16 14 O -0.48 -6.79 13.24 -11.50 -0.15 -6.94 16 15 N -1.06 -7.73 5.70 31.22 0.18 -7.55 16 16 S 2.69 25.29 5.41 -107.50 -0.58 24.71 16 17 O -0.94 -9.45 17.36 -57.17 -0.99 -10.45 16 18 O -0.92 -11.90 16.25 -64.60 -1.05 -12.95 16 19 C -0.73 -6.89 5.75 -39.45 -0.23 -7.11 16 20 C 0.23 2.51 9.72 -17.55 -0.17 2.34 16 21 N -0.48 -5.24 10.36 -13.22 -0.14 -5.38 16 22 C 0.17 1.48 10.99 -17.51 -0.19 1.29 16 23 C -0.12 -0.95 6.34 -39.36 -0.25 -1.20 16 24 Cl -0.04 -0.28 28.99 -51.86 -1.50 -1.78 16 25 C 0.04 0.29 9.46 -39.25 -0.37 -0.09 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.44 1.43 8.83 -34.47 -0.30 1.12 16 36 H 0.19 2.15 6.89 -52.48 -0.36 1.78 16 37 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.16 0.93 7.71 -52.49 -0.40 0.53 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -36.24 358.86 -9.79 -46.03 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.41 Total: -3.50 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.26 Total: -17.81 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.78 Total: -39.15 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -2.19 Total: -30.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 25.29 SS G_CDS: -0.58 Total: 24.71 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.50 Total: -1.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.24 -9.79 -46.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805902581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.772 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds