Wall clock time and date at job start Sat Apr 11 2020 07:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48499 * 109.47064 * 269.99565 * 3 2 1 5 5 H 1.48500 * 109.46882 * 30.00148 * 3 2 1 6 6 H 1.48503 * 109.46725 * 149.99890 * 3 2 1 7 7 C 1.37874 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47194 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47554 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47150 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00433 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99747 * 179.97438 * 13 12 11 16 16 S 1.65606 * 119.99997 * 180.02562 * 15 13 12 17 17 O 1.42095 * 106.40177 * 311.45758 * 16 15 13 18 18 O 1.42104 * 106.39793 * 178.54354 * 16 15 13 19 19 C 1.76192 * 107.21810 * 65.00105 * 16 15 13 20 20 C 1.38714 * 120.78375 * 269.97702 * 19 16 15 21 21 C 1.38143 * 119.19787 * 180.02562 * 20 19 16 22 22 N 1.31904 * 120.77996 * 0.02562 * 21 20 19 23 23 C 1.31950 * 121.70670 * 359.68219 * 22 21 20 24 24 Cl 1.73608 * 119.63367 * 180.28810 * 23 22 21 25 25 C 1.38393 * 120.73265 * 0.58300 * 23 22 21 26 26 H 0.97001 * 120.00212 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47459 * 59.99832 * 9 7 2 28 28 H 1.09004 * 109.46702 * 299.99640 * 9 7 2 29 29 H 1.08995 * 109.47350 * 60.00046 * 10 9 7 30 30 H 1.09004 * 109.46958 * 299.99429 * 10 9 7 31 31 H 1.09001 * 109.47456 * 59.99322 * 11 10 9 32 32 H 1.09004 * 109.46723 * 299.99572 * 11 10 9 33 33 H 1.09004 * 109.46429 * 59.99738 * 12 11 10 34 34 H 1.08996 * 109.47039 * 300.00064 * 12 11 10 35 35 H 0.97005 * 120.00212 * 359.97438 * 15 13 12 36 36 H 1.08000 * 120.39950 * 359.97438 * 20 19 16 37 37 H 1.07998 * 119.60887 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.43045 * 179.73537 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0018 13 6 1.7208 -7.4551 0.0018 14 8 0.5080 -7.4551 0.0009 15 7 2.3946 -8.6223 0.0018 16 16 1.5665 -10.0565 0.0012 17 8 0.5839 -9.9529 1.0224 18 8 2.5461 -11.0853 -0.0333 19 6 0.6904 -10.1522 -1.5245 20 6 -0.5983 -9.6512 -1.6357 21 6 -1.2552 -9.7440 -2.8474 22 7 -0.6713 -10.3012 -3.8908 23 6 0.5551 -10.7832 -3.8238 24 17 1.2744 -11.4987 -5.2326 25 6 1.2722 -10.7303 -2.6413 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5572 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8711 -3.6040 0.8922 30 1 2.8724 -3.6048 -0.8878 31 1 0.8544 -5.0450 -0.8894 32 1 0.8526 -5.0447 0.8906 33 1 3.1003 -6.0924 0.8923 34 1 3.1016 -6.0924 -0.8877 35 1 3.3646 -8.6224 0.0014 36 1 -1.0826 -9.1949 -0.7850 37 1 -2.2588 -9.3565 -2.9414 38 1 2.2742 -11.1302 -2.5909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805911720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:43 Heat of formation + Delta-G solvation = -96.760142 kcal Electronic energy + Delta-G solvation = -24849.548186 eV Core-core repulsion = 20844.752220 eV Total energy + Delta-G solvation = -4004.795966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81539 -40.42983 -37.83944 -37.19956 -36.51784 -35.15771 -34.90329 -33.55650 -32.72071 -31.73191 -29.94465 -26.02812 -24.98862 -24.30639 -23.20412 -21.24949 -20.47865 -20.12584 -19.18298 -18.27450 -17.70555 -17.28729 -16.48686 -16.34314 -16.22777 -15.71909 -15.52463 -15.17581 -14.79959 -14.65274 -14.40399 -14.33283 -13.34001 -12.82011 -12.73783 -12.68171 -12.56260 -12.54769 -12.37714 -12.22559 -11.87824 -11.85139 -11.73767 -11.36519 -11.11357 -11.06966 -10.68624 -10.66379 -10.54200 -10.43460 -10.28187 -9.72170 -9.62964 -9.33916 -9.06926 -8.36205 -6.00949 -4.03752 -0.52346 -0.04055 0.26173 1.20172 1.75993 2.15570 2.79680 3.05083 3.30289 3.36825 3.39466 3.55361 3.84678 4.08999 4.23174 4.26349 4.44448 4.45009 4.53843 4.81421 4.88153 5.01480 5.08653 5.16438 5.34785 5.56927 5.76104 5.95067 6.07030 6.17426 6.37039 6.68285 6.86042 6.96475 7.09362 7.17252 7.66796 7.81131 7.99370 8.40922 9.03811 9.60441 11.10332 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002219 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.164382 B =12615.657636 C =13554.561075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.109 4.109 12 C -0.140 4.140 13 C 0.534 3.466 14 O -0.485 6.485 15 N -1.054 6.054 16 S 2.683 3.317 17 O -0.915 6.915 18 O -0.937 6.937 19 C -0.624 4.624 20 C -0.046 4.046 21 C 0.109 3.891 22 N -0.436 5.436 23 C 0.154 3.846 24 Cl -0.018 7.018 25 C -0.057 4.057 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.438 0.562 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -25.539 -4.852 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.181 4.181 13 C 0.322 3.678 14 O -0.355 6.355 15 N -0.822 5.822 16 S 2.772 3.228 17 O -0.905 6.905 18 O -0.927 6.927 19 C -0.717 4.717 20 C -0.067 4.067 21 C -0.050 4.050 22 N -0.146 5.146 23 C -0.011 4.011 24 Cl 0.010 6.990 25 C -0.079 4.079 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.275 0.725 36 H 0.189 0.811 37 H 0.198 0.802 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.191 -26.139 -5.126 26.827 hybrid contribution 1.234 1.109 -0.185 1.670 sum 4.425 -25.029 -5.311 25.967 Atomic orbital electron populations 1.69963 1.06063 1.26606 1.50780 1.25035 0.94841 0.99269 0.95379 0.86611 0.79833 0.83565 0.78069 1.20702 1.21229 1.19906 1.21260 0.92978 0.91154 1.50625 0.92739 1.19095 0.94023 0.91245 0.97361 1.21655 0.99156 0.93708 1.00317 1.21568 0.97048 0.92716 1.03402 1.21993 1.00448 0.90390 1.05306 1.21321 0.88408 0.85916 0.72150 1.90846 1.13328 1.86869 1.44445 1.55137 1.22074 1.23416 1.81543 1.02727 0.73810 0.72535 0.73760 1.93683 1.60031 1.84826 1.52001 1.93664 1.59598 1.52807 1.86629 1.31459 1.08716 1.10606 1.20967 1.22293 0.92168 0.91673 1.00572 1.23019 1.00522 0.94471 0.86977 1.67094 1.08920 1.06081 1.32543 1.21704 0.91673 0.98647 0.89054 1.98434 1.80381 1.80658 1.39502 1.21589 1.01215 0.94922 0.90161 0.92985 0.96592 0.96509 0.93211 0.93323 0.91501 0.91231 0.87669 0.87822 0.72497 0.81059 0.80154 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.05 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.64 4.50 -26.73 -0.12 -1.76 16 12 C -0.14 -1.38 5.70 -27.88 -0.16 -1.53 16 13 C 0.53 5.45 7.66 -10.99 -0.08 5.37 16 14 O -0.48 -6.48 13.27 -11.50 -0.15 -6.63 16 15 N -1.05 -7.48 5.70 31.22 0.18 -7.30 16 16 S 2.68 24.64 5.41 -107.50 -0.58 24.06 16 17 O -0.92 -11.56 16.33 -64.60 -1.06 -12.61 16 18 O -0.94 -9.31 17.38 -57.17 -0.99 -10.31 16 19 C -0.62 -5.77 5.77 -39.28 -0.23 -6.00 16 20 C -0.05 -0.43 8.64 -39.44 -0.34 -0.77 16 21 C 0.11 0.98 11.18 -17.56 -0.20 0.78 16 22 N -0.44 -4.63 10.34 -10.36 -0.11 -4.74 16 23 C 0.15 1.52 7.27 -17.44 -0.13 1.39 16 24 Cl -0.02 -0.16 29.11 -51.86 -1.51 -1.67 16 25 C -0.06 -0.49 9.38 -39.40 -0.37 -0.86 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.44 1.35 8.83 -34.48 -0.30 1.04 16 36 H 0.17 1.58 7.03 -52.49 -0.37 1.21 16 37 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.16 1.01 7.72 -52.49 -0.41 0.60 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -36.22 359.23 -9.82 -46.04 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -4.42 Total: -4.05 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -2.31 Total: -18.50 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.81 Total: -38.07 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -2.20 Total: -29.55 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 24.64 SS G_CDS: -0.58 Total: 24.06 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.51 Total: -1.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.22 -9.82 -46.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805911720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.717 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds