Wall clock time and date at job start Sat Apr 11 2020 07:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48499 * 109.47064 * 269.99565 * 3 2 1 5 5 H 1.48500 * 109.46882 * 30.00148 * 3 2 1 6 6 H 1.48503 * 109.46725 * 149.99890 * 3 2 1 7 7 C 1.37874 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47194 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47554 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47150 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00433 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99747 * 179.97438 * 13 12 11 16 16 S 1.65606 * 119.99997 * 180.02562 * 15 13 12 17 17 O 1.42095 * 106.40177 * 311.45758 * 16 15 13 18 18 O 1.42104 * 106.39793 * 178.54354 * 16 15 13 19 19 C 1.76192 * 107.21810 * 65.00105 * 16 15 13 20 20 C 1.38714 * 120.78375 * 269.97702 * 19 16 15 21 21 C 1.38143 * 119.19787 * 180.02562 * 20 19 16 22 22 N 1.31904 * 120.77996 * 0.02562 * 21 20 19 23 23 C 1.31950 * 121.70670 * 359.68219 * 22 21 20 24 24 Cl 1.73608 * 119.63367 * 180.28810 * 23 22 21 25 25 C 1.38393 * 120.73265 * 0.58300 * 23 22 21 26 26 H 0.97001 * 120.00212 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47459 * 59.99832 * 9 7 2 28 28 H 1.09004 * 109.46702 * 299.99640 * 9 7 2 29 29 H 1.08995 * 109.47350 * 60.00046 * 10 9 7 30 30 H 1.09004 * 109.46958 * 299.99429 * 10 9 7 31 31 H 1.09001 * 109.47456 * 59.99322 * 11 10 9 32 32 H 1.09004 * 109.46723 * 299.99572 * 11 10 9 33 33 H 1.09004 * 109.46429 * 59.99738 * 12 11 10 34 34 H 1.08996 * 109.47039 * 300.00064 * 12 11 10 35 35 H 0.97005 * 120.00212 * 359.97438 * 15 13 12 36 36 H 1.08000 * 120.39950 * 359.97438 * 20 19 16 37 37 H 1.07998 * 119.60887 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.43045 * 179.73537 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0018 13 6 1.7208 -7.4551 0.0018 14 8 0.5080 -7.4551 0.0009 15 7 2.3946 -8.6223 0.0018 16 16 1.5665 -10.0565 0.0012 17 8 0.5839 -9.9529 1.0224 18 8 2.5461 -11.0853 -0.0333 19 6 0.6904 -10.1522 -1.5245 20 6 -0.5983 -9.6512 -1.6357 21 6 -1.2552 -9.7440 -2.8474 22 7 -0.6713 -10.3012 -3.8908 23 6 0.5551 -10.7832 -3.8238 24 17 1.2744 -11.4987 -5.2326 25 6 1.2722 -10.7303 -2.6413 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5572 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8711 -3.6040 0.8922 30 1 2.8724 -3.6048 -0.8878 31 1 0.8544 -5.0450 -0.8894 32 1 0.8526 -5.0447 0.8906 33 1 3.1003 -6.0924 0.8923 34 1 3.1016 -6.0924 -0.8877 35 1 3.3646 -8.6224 0.0014 36 1 -1.0826 -9.1949 -0.7850 37 1 -2.2588 -9.3565 -2.9414 38 1 2.2742 -11.1302 -2.5909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805911720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:43 Heat of formation + Delta-G solvation = -123.144705 kcal Electronic energy + Delta-G solvation = -24850.692307 eV Core-core repulsion = 20844.752220 eV Total energy + Delta-G solvation = -4005.940086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52496 -41.26339 -38.65460 -37.88725 -37.35083 -36.66203 -35.68544 -34.60206 -34.26707 -32.42170 -31.50259 -27.66197 -25.70557 -25.01002 -24.70779 -22.43405 -21.60032 -21.15561 -19.91052 -19.05788 -18.50951 -18.35422 -18.03937 -17.23050 -17.09770 -16.54071 -16.51692 -16.32963 -15.91455 -15.59799 -15.57897 -15.30471 -14.56099 -14.07549 -13.86105 -13.61700 -13.56776 -13.54038 -13.34422 -13.21610 -13.10436 -13.00491 -12.82291 -12.54125 -12.34514 -12.15375 -12.13333 -12.10856 -11.84238 -11.49144 -11.30961 -11.23332 -11.00156 -10.94479 -10.52367 -10.32142 -8.16962 -6.28178 -1.26021 -0.76798 -0.43161 0.50488 0.97070 1.41868 1.42758 1.43421 1.54375 2.07922 2.33526 2.43229 2.83754 3.16452 3.16575 3.32114 3.54811 3.58346 3.74690 3.86110 4.06441 4.12881 4.19615 4.28492 4.47605 4.65013 4.71992 4.89177 4.90946 5.09469 5.23460 5.36769 5.43215 5.60095 5.62989 5.83636 5.92664 6.26196 6.28436 6.41469 6.91338 7.41562 8.95026 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002219 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.164382 B =12615.657636 C =13554.561075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.098 4.098 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.538 3.462 14 O -0.521 6.521 15 N -1.034 6.034 16 S 2.705 3.295 17 O -0.951 6.951 18 O -0.941 6.941 19 C -0.628 4.628 20 C -0.055 4.055 21 C 0.105 3.895 22 N -0.457 5.457 23 C 0.141 3.859 24 Cl -0.012 7.012 25 C -0.054 4.054 26 H 0.262 0.738 27 H -0.014 1.014 28 H -0.015 1.015 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.458 0.542 36 H 0.169 0.831 37 H 0.205 0.795 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.329 -25.893 -5.098 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.173 4.173 13 C 0.327 3.673 14 O -0.394 6.394 15 N -0.804 5.804 16 S 2.794 3.206 17 O -0.941 6.941 18 O -0.932 6.932 19 C -0.721 4.721 20 C -0.076 4.076 21 C -0.053 4.053 22 N -0.168 5.168 23 C -0.024 4.024 24 Cl 0.016 6.984 25 C -0.076 4.076 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.004 0.996 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.300 0.700 36 H 0.187 0.813 37 H 0.221 0.779 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.926 -26.522 -5.368 27.701 hybrid contribution 0.377 1.200 -0.131 1.265 sum 6.303 -25.322 -5.500 26.668 Atomic orbital electron populations 1.70116 1.07982 1.27654 1.52068 1.26039 0.95729 1.03577 0.94974 0.85451 0.78755 0.78422 0.78440 1.19845 1.21166 1.18333 1.21780 0.93757 0.92331 1.49899 0.91605 1.19069 0.94765 0.93726 0.94422 1.21450 0.97829 0.92699 1.01540 1.21361 0.97652 0.93353 1.01915 1.21917 0.99272 0.87634 1.08459 1.21366 0.87912 0.86649 0.71415 1.90853 1.15009 1.87343 1.46155 1.54747 1.23235 1.21775 1.80691 1.01943 0.73117 0.72436 0.73104 1.93645 1.61308 1.85451 1.53718 1.93653 1.59585 1.53214 1.86701 1.31446 1.08762 1.10905 1.21034 1.22386 0.92558 0.91932 1.00767 1.23409 1.01431 0.93996 0.86479 1.67122 1.09571 1.06829 1.33244 1.21938 0.91791 0.98901 0.89743 1.98431 1.80194 1.80523 1.39214 1.21845 1.02106 0.94265 0.89378 0.92937 0.99573 0.99614 0.91939 0.91891 0.92964 0.93087 0.84670 0.84448 0.70033 0.81308 0.77885 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 0.89 4.97 29.85 0.15 1.04 16 10 C -0.10 -3.50 5.15 30.59 0.16 -3.34 16 11 C -0.10 -3.05 4.50 30.60 0.14 -2.91 16 12 C -0.13 -2.18 5.70 29.85 0.17 -2.01 16 13 C 0.54 9.91 7.66 87.66 0.67 10.58 16 14 O -0.52 -13.70 13.27 13.27 0.18 -13.52 16 15 N -1.03 -12.07 5.70 -173.54 -0.99 -13.05 16 16 S 2.70 45.87 5.41 -56.49 -0.31 45.56 16 17 O -0.95 -23.65 16.33 -120.90 -1.97 -25.63 16 18 O -0.94 -16.76 17.38 -128.00 -2.22 -18.99 16 19 C -0.63 -10.97 5.77 22.46 0.13 -10.84 16 20 C -0.06 -1.03 8.64 22.36 0.19 -0.84 16 21 C 0.10 1.85 11.18 84.66 0.95 2.80 16 22 N -0.46 -9.45 10.34 -186.69 -1.93 -11.38 16 23 C 0.14 2.64 7.27 84.71 0.62 3.26 16 24 Cl -0.01 -0.20 29.11 -2.72 -0.08 -0.28 16 25 C -0.05 -0.86 9.38 22.39 0.21 -0.65 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.14 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.46 1.16 8.83 -96.74 -0.85 0.31 16 36 H 0.17 3.22 7.03 -2.91 -0.02 3.19 16 37 H 0.20 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.19 1.87 7.72 -2.91 -0.02 1.85 16 Total: -1.00 -80.22 359.23 -0.69 -80.91 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 0.25 Total: 0.46 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 4.08 Total: -32.52 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.63 Total: -81.60 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -4.02 Total: -58.14 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 45.87 SS G_CDS: -0.31 Total: 45.56 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -80.22 -0.69 -80.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805911720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.233 kcal (2) G-P(sol) polarization free energy of solvation -80.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds