Wall clock time and date at job start Sat Apr 11 2020 07:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 120.00013 * 2 1 4 4 H 1.48500 * 109.46869 * 270.00089 * 3 2 1 5 5 H 1.48506 * 109.46932 * 29.99386 * 3 2 1 6 6 H 1.48492 * 109.47342 * 149.99747 * 3 2 1 7 7 C 1.38947 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00359 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.34783 * 120.00272 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99389 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00305 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47376 * 180.02562 * 12 10 9 14 14 C 1.34772 * 120.00009 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00357 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99572 * 179.97438 * 14 13 12 17 17 N 1.40097 * 120.00114 * 0.02562 * 16 14 13 18 18 C 1.39671 * 119.99833 * 180.02562 * 17 16 14 19 19 C 1.38905 * 120.05711 * 180.02562 * 18 17 16 20 20 C 1.38223 * 119.93300 * 179.97438 * 19 18 17 21 21 Cl 1.73607 * 119.96676 * 179.97438 * 20 19 18 22 22 C 1.38386 * 120.06635 * 0.02562 * 20 19 18 23 23 C 1.38389 * 120.11929 * 359.96004 * 22 20 19 24 24 Cl 1.73605 * 119.96756 * 180.02562 * 23 22 20 25 25 C 1.38218 * 120.06177 * 0.04202 * 23 22 20 26 26 H 0.96994 * 120.00037 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00525 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47355 * 59.99550 * 12 10 9 29 29 H 1.09005 * 109.47086 * 299.99453 * 12 10 9 30 30 H 0.97002 * 119.99643 * 359.97438 * 13 12 10 31 31 H 0.96999 * 119.99875 * 180.02562 * 16 14 13 32 32 H 0.96999 * 120.00011 * 359.97438 * 17 16 14 33 33 H 1.07994 * 120.03281 * 359.69604 * 19 18 17 34 34 H 1.08005 * 119.94035 * 179.97438 * 22 20 19 35 35 H 1.08006 * 120.03149 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5607 -2.3705 0.0011 13 7 6.0491 -3.7517 0.0005 14 6 7.3742 -3.9979 -0.0002 15 8 8.1643 -3.0738 -0.0007 16 7 7.8234 -5.2687 -0.0002 17 7 6.9130 -6.3335 -0.0002 18 6 7.3786 -7.6504 0.0003 19 6 6.4771 -8.7071 -0.0001 20 6 6.9407 -10.0092 -0.0002 21 17 5.8147 -11.3306 -0.0001 22 6 8.3015 -10.2607 0.0008 23 6 9.2019 -9.2098 0.0009 24 17 10.9082 -9.5298 0.0015 25 6 8.7439 -7.9057 0.0010 26 1 -0.4850 0.8400 -0.0004 27 1 3.8649 -0.3633 0.0014 28 1 5.9241 -1.8566 0.8910 29 1 5.9240 -1.8567 -0.8890 30 1 5.4188 -4.4890 0.0005 31 1 8.7771 -5.4459 -0.0003 32 1 5.9594 -6.1563 0.0003 33 1 5.4150 -8.5115 0.0041 34 1 8.6615 -11.2790 0.0012 35 1 9.4471 -7.0858 0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807552837.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:50 Heat of formation + Delta-G solvation = -1.312998 kcal Electronic energy + Delta-G solvation = -23895.073192 eV Core-core repulsion = 19788.832075 eV Total energy + Delta-G solvation = -4106.241117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.039 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.67914 -39.76721 -38.52208 -37.21217 -37.15019 -36.06524 -34.70368 -33.88872 -32.33640 -31.88054 -31.05418 -28.63425 -27.87263 -24.55463 -23.47087 -22.84837 -21.08908 -19.97891 -19.34067 -18.99928 -18.38115 -16.88243 -16.68236 -16.06506 -15.95319 -15.72134 -15.24275 -14.95052 -14.82868 -14.74880 -14.71035 -14.29066 -14.24857 -13.23783 -12.97867 -12.72504 -12.62239 -12.60873 -12.27993 -12.25924 -12.17329 -11.56917 -11.32807 -11.30834 -11.14306 -10.70873 -10.62593 -10.13713 -9.78619 -9.75214 -9.21469 -9.16104 -8.89653 -8.39291 -7.76701 -6.48415 -4.01576 0.54568 0.80255 1.27139 1.66476 1.89710 2.84645 2.88920 2.93769 2.98646 3.07703 3.09309 3.45365 3.96680 4.24907 4.42600 4.47846 4.58470 4.63501 4.77888 5.03571 5.06221 5.47632 5.52978 5.63064 5.63858 5.68613 5.68831 5.83809 6.09946 6.27852 6.77107 7.01949 7.35925 7.87589 7.93398 8.28044 8.36751 8.73013 9.20832 9.52580 10.63423 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.002059 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.644965 B =13595.755117 C =15281.255960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.582 6.582 12 C 0.123 3.877 13 N -0.720 5.720 14 C 0.715 3.285 15 O -0.577 6.577 16 N -0.535 5.535 17 N -0.537 5.537 18 C 0.250 3.750 19 C -0.178 4.178 20 C 0.032 3.968 21 Cl -0.053 7.053 22 C -0.163 4.163 23 C 0.031 3.969 24 Cl -0.056 7.056 25 C -0.189 4.189 26 H 0.277 0.723 27 H 0.375 0.625 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.404 0.596 31 H 0.432 0.568 32 H 0.433 0.567 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.284 -17.973 -0.009 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.209 5.209 10 C 0.221 3.779 11 O -0.467 6.467 12 C -0.005 4.005 13 N -0.379 5.379 14 C 0.414 3.586 15 O -0.451 6.451 16 N -0.291 5.291 17 N -0.266 5.266 18 C 0.144 3.856 19 C -0.203 4.203 20 C 0.004 3.996 21 Cl -0.023 7.023 22 C -0.185 4.185 23 C 0.003 3.997 24 Cl -0.027 7.027 25 C -0.214 4.214 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.242 0.758 31 H 0.278 0.722 32 H 0.277 0.723 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 18.209 -17.676 -0.009 25.377 hybrid contribution 0.265 0.915 0.018 0.953 sum 18.474 -16.761 0.009 24.944 Atomic orbital electron populations 1.69614 1.05736 1.27953 1.47668 1.25082 0.95554 0.98249 0.96985 0.86665 0.79911 0.83694 0.79196 1.19328 1.19907 1.19193 1.19434 0.78854 0.96835 1.48902 0.86023 1.42108 1.07752 1.06112 1.64961 1.19558 0.87890 0.84966 0.85451 1.90527 1.69154 1.30910 1.56085 1.20908 0.93798 0.82144 1.03698 1.44764 1.04850 1.09831 1.78454 1.15570 0.83300 0.81227 0.78454 1.91028 1.55138 1.39742 1.59205 1.44491 1.05473 0.97011 1.82113 1.43400 1.04422 0.96162 1.82576 1.17197 0.92119 0.82487 0.93844 1.20385 1.00465 0.89408 1.09997 1.20271 0.90028 0.88640 1.00695 1.98405 1.60879 1.46455 1.96606 1.20641 0.90326 0.99550 1.07960 1.20300 0.85264 0.93356 1.00797 1.98398 1.11842 1.95848 1.96646 1.20307 0.93808 0.96042 1.11209 0.91277 0.79164 0.89424 0.89419 0.75769 0.72181 0.72279 0.83600 0.83982 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.24 13.96 55.50 0.77 -23.47 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.38 27.74 -169.99 -4.71 13.66 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.07 6.52 56.52 0.37 -4.70 16 7 C -0.31 -8.28 10.16 -14.93 -0.15 -8.44 16 8 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 9 N -0.57 -12.65 5.09 -10.97 -0.06 -12.71 16 10 C 0.44 8.96 7.85 -10.99 -0.09 8.88 16 11 O -0.58 -13.73 15.24 5.55 0.08 -13.64 16 12 C 0.12 1.95 6.15 -5.20 -0.03 1.92 16 13 N -0.72 -10.31 5.49 -66.41 -0.36 -10.68 16 14 C 0.72 9.87 8.68 -86.92 -0.75 9.12 16 15 O -0.58 -9.69 17.18 5.29 0.09 -9.59 16 16 N -0.54 -5.52 6.22 27.63 0.17 -5.35 16 17 N -0.54 -4.85 6.45 32.41 0.21 -4.64 16 18 C 0.25 2.11 6.72 -83.80 -0.56 1.55 16 19 C -0.18 -1.44 9.68 -39.34 -0.38 -1.83 16 20 C 0.03 0.26 6.32 -39.53 -0.25 0.01 16 21 Cl -0.05 -0.42 28.95 -51.86 -1.50 -1.92 16 22 C -0.16 -1.27 9.61 -39.47 -0.38 -1.65 16 23 C 0.03 0.25 6.32 -39.53 -0.25 0.00 16 24 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.93 16 25 C -0.19 -1.53 9.26 -39.35 -0.36 -1.89 16 26 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.38 7.29 5.76 -40.82 -0.24 7.06 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.40 5.58 5.36 -40.82 -0.22 5.36 16 31 H 0.43 3.77 6.70 -182.60 -1.22 2.54 16 32 H 0.43 3.81 6.71 -182.60 -1.23 2.59 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.14 0.94 6.20 -52.48 -0.33 0.61 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -31.01 341.07 -9.45 -40.46 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -4.48 Total: 15.90 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -3.31 Total: 8.76 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.73 Total: -56.84 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.18 Total: -23.24 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.71 Total: 13.66 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -3.00 Total: -3.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.01 -9.45 -40.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552837.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.149 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds