Wall clock time and date at job start Sat Apr 11 2020 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99956 * 2 1 4 4 H 1.48495 * 109.47141 * 239.99827 * 3 2 1 5 5 H 1.48503 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47326 * 119.99760 * 3 2 1 7 7 C 1.38953 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00199 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99345 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00393 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47335 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00431 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99764 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00480 * 180.02562 * 14 13 12 17 17 N 1.40098 * 119.99503 * 0.02562 * 16 14 13 18 18 C 1.39753 * 119.99489 * 180.02562 * 17 16 14 19 19 C 1.38858 * 120.07541 * 0.02562 * 18 17 16 20 20 C 1.38228 * 119.92969 * 179.97438 * 19 18 17 21 21 Cl 1.73593 * 119.96728 * 179.97438 * 20 19 18 22 22 C 1.38410 * 120.06385 * 0.02562 * 20 19 18 23 23 C 1.38255 * 120.14541 * 359.95646 * 22 20 19 24 24 C 1.38218 * 120.07298 * 0.04526 * 23 22 20 25 25 Cl 1.73598 * 120.03222 * 180.25763 * 24 23 22 26 26 H 0.96997 * 119.99725 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00210 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47367 * 59.99845 * 12 10 9 29 29 H 1.08999 * 109.47062 * 300.00098 * 12 10 9 30 30 H 0.97002 * 120.00153 * 0.02562 * 13 12 10 31 31 H 0.97002 * 120.00059 * 180.02562 * 16 14 13 32 32 H 0.96993 * 120.00725 * 359.97438 * 17 16 14 33 33 H 1.08007 * 120.03371 * 359.95845 * 19 18 17 34 34 H 1.07998 * 119.92611 * 179.97438 * 22 20 19 35 35 H 1.08001 * 119.96582 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0016 14 6 1.7467 -7.2471 0.0027 15 8 0.5513 -7.4693 0.0028 16 7 2.6226 -8.2715 0.0037 17 7 3.9999 -8.0154 0.0041 18 6 4.9081 -9.0777 0.0046 19 6 4.4469 -10.3874 0.0041 20 6 5.3478 -11.4358 0.0040 21 17 4.7724 -13.0736 0.0041 22 6 6.7082 -11.1810 0.0050 23 6 7.1706 -9.8780 0.0051 24 6 6.2749 -8.8253 0.0052 25 17 6.8566 -7.1897 -0.0014 26 1 -0.4849 0.8400 -0.0004 27 1 0.3535 -2.3906 0.0005 28 1 0.6169 -4.9209 -0.8886 29 1 0.6176 -4.9204 0.8913 30 1 3.1496 -5.7992 0.0019 31 1 2.2992 -9.1861 0.0041 32 1 4.3233 -7.1010 0.0033 33 1 3.3854 -10.5868 0.0040 34 1 7.4101 -12.0018 0.0054 35 1 8.2327 -9.6825 0.0054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807554116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:57 Heat of formation + Delta-G solvation = -8.172213 kcal Electronic energy + Delta-G solvation = -24168.863673 eV Core-core repulsion = 20062.325118 eV Total energy + Delta-G solvation = -4106.538555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.039 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62175 -39.70089 -38.30180 -37.23864 -36.73921 -36.24941 -34.59596 -33.78175 -32.26432 -31.43229 -31.06776 -28.49332 -27.64942 -24.65186 -23.47397 -22.80432 -21.04859 -19.92525 -19.03664 -18.92804 -18.06582 -16.90495 -16.75414 -15.98593 -15.85729 -15.61286 -15.10364 -15.01037 -14.73262 -14.72347 -14.22091 -14.17618 -14.14652 -13.57055 -12.95160 -12.74244 -12.48506 -12.33007 -12.23640 -12.01039 -11.67994 -11.40860 -11.24737 -11.18398 -11.14275 -10.56120 -10.52724 -10.34825 -9.81378 -9.68368 -9.16687 -9.02319 -8.71919 -8.16292 -7.69329 -6.56658 -3.98964 0.54609 0.87013 1.53305 1.61503 1.90546 2.94758 2.96570 3.09717 3.13387 3.18691 3.22703 3.66842 4.05183 4.15139 4.34590 4.61292 4.74045 4.77785 4.96675 5.11691 5.21761 5.31198 5.66520 5.71946 5.76584 5.86772 5.92820 5.96967 6.15262 6.43243 6.82982 7.05648 7.40905 7.85525 7.97725 8.36128 8.40668 8.98693 9.32407 9.79772 10.59907 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.002221 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.446835 B =12603.970701 C =14073.272590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.545 5.545 10 C 0.425 3.575 11 O -0.599 6.599 12 C 0.125 3.875 13 N -0.719 5.719 14 C 0.715 3.285 15 O -0.575 6.575 16 N -0.535 5.535 17 N -0.535 5.535 18 C 0.247 3.753 19 C -0.184 4.184 20 C 0.024 3.976 21 Cl -0.061 7.061 22 C -0.160 4.160 23 C -0.041 4.041 24 C -0.110 4.110 25 Cl -0.050 7.050 26 H 0.276 0.724 27 H 0.397 0.603 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.403 0.597 31 H 0.432 0.568 32 H 0.433 0.567 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.111 -22.103 0.008 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.486 6.486 12 C -0.003 4.003 13 N -0.378 5.378 14 C 0.414 3.586 15 O -0.449 6.449 16 N -0.291 5.291 17 N -0.264 5.264 18 C 0.139 3.861 19 C -0.208 4.208 20 C -0.004 4.004 21 Cl -0.032 7.032 22 C -0.181 4.181 23 C -0.061 4.061 24 C -0.143 4.143 25 Cl -0.021 7.021 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.241 0.759 31 H 0.278 0.722 32 H 0.279 0.721 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.614 -21.833 0.008 24.276 hybrid contribution 0.196 0.934 -0.002 0.955 sum 10.810 -20.898 0.006 23.529 Atomic orbital electron populations 1.69603 1.06017 1.28742 1.48914 1.25339 0.95680 0.99981 0.96639 0.85864 0.78794 0.80079 0.79191 1.19744 1.20808 1.19736 1.19679 0.93451 0.81934 1.48526 0.87678 1.41766 1.09517 1.04409 1.62266 1.19674 0.88290 0.84934 0.86001 1.90494 1.13674 1.86770 1.57632 1.20898 0.91070 0.84717 1.03629 1.44815 1.11309 1.03491 1.78220 1.15592 0.84143 0.80402 0.78487 1.91030 1.11965 1.82768 1.59184 1.44511 0.92867 1.09493 1.82275 1.43588 0.93452 1.07475 1.81920 1.17121 0.86909 0.87244 0.94798 1.20176 1.00148 0.89018 1.11470 1.20611 0.93542 0.85608 1.00595 1.98394 1.89222 1.18944 1.96605 1.20782 0.93432 0.96979 1.06935 1.20784 0.99642 0.90039 0.95594 1.20330 0.90969 0.87749 1.15293 1.98419 1.88181 1.18308 1.97215 0.91451 0.76961 0.89505 0.89513 0.75914 0.72221 0.72126 0.84418 0.84123 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.42 13.05 55.50 0.72 -22.70 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.23 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.31 -8.16 9.68 -14.94 -0.14 -8.30 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.15 5.29 -10.97 -0.06 -13.21 16 10 C 0.43 9.44 7.85 -10.99 -0.09 9.36 16 11 O -0.60 -14.79 15.24 5.54 0.08 -14.70 16 12 C 0.12 2.22 6.15 -5.20 -0.03 2.18 16 13 N -0.72 -11.64 5.49 -66.42 -0.36 -12.01 16 14 C 0.71 10.97 8.68 -86.92 -0.75 10.21 16 15 O -0.58 -10.42 17.18 5.28 0.09 -10.33 16 16 N -0.54 -6.31 6.22 27.64 0.17 -6.14 16 17 N -0.53 -5.92 6.41 32.43 0.21 -5.72 16 18 C 0.25 2.43 6.72 -83.74 -0.56 1.86 16 19 C -0.18 -1.60 9.26 -39.36 -0.36 -1.96 16 20 C 0.02 0.19 6.32 -39.52 -0.25 -0.06 16 21 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 22 C -0.16 -1.11 9.82 -39.51 -0.39 -1.50 16 23 C -0.04 -0.30 9.82 -39.58 -0.39 -0.69 16 24 C -0.11 -1.03 6.34 -39.31 -0.25 -1.28 16 25 Cl -0.05 -0.52 27.59 -51.86 -1.43 -1.95 16 26 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.40 9.18 7.90 -40.82 -0.32 8.86 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.40 6.46 5.36 -40.82 -0.22 6.24 16 31 H 0.43 4.21 6.71 -182.60 -1.22 2.99 16 32 H 0.43 5.15 5.37 -182.61 -0.98 4.17 16 33 H 0.14 1.04 6.20 -52.48 -0.33 0.72 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -30.19 341.84 -9.54 -39.73 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -4.27 Total: 18.19 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -3.32 Total: 10.43 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.68 Total: -59.77 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.18 Total: -25.03 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.93 Total: -3.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.19 -9.54 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807554116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.560 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds