Wall clock time and date at job start Sat Apr 11 2020 07:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99956 * 2 1 4 4 H 1.48495 * 109.47141 * 239.99827 * 3 2 1 5 5 H 1.48503 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47326 * 119.99760 * 3 2 1 7 7 C 1.38953 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00199 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99345 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00393 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47335 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00431 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99764 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00480 * 180.02562 * 14 13 12 17 17 N 1.40098 * 119.99503 * 0.02562 * 16 14 13 18 18 C 1.39753 * 119.99489 * 180.02562 * 17 16 14 19 19 C 1.38858 * 120.07541 * 0.02562 * 18 17 16 20 20 C 1.38228 * 119.92969 * 179.97438 * 19 18 17 21 21 Cl 1.73593 * 119.96728 * 179.97438 * 20 19 18 22 22 C 1.38410 * 120.06385 * 0.02562 * 20 19 18 23 23 C 1.38255 * 120.14541 * 359.95646 * 22 20 19 24 24 C 1.38218 * 120.07298 * 0.04526 * 23 22 20 25 25 Cl 1.73598 * 120.03222 * 180.25763 * 24 23 22 26 26 H 0.96997 * 119.99725 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00210 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47367 * 59.99845 * 12 10 9 29 29 H 1.08999 * 109.47062 * 300.00098 * 12 10 9 30 30 H 0.97002 * 120.00153 * 0.02562 * 13 12 10 31 31 H 0.97002 * 120.00059 * 180.02562 * 16 14 13 32 32 H 0.96993 * 120.00725 * 359.97438 * 17 16 14 33 33 H 1.08007 * 120.03371 * 359.95845 * 19 18 17 34 34 H 1.07998 * 119.92611 * 179.97438 * 22 20 19 35 35 H 1.08001 * 119.96582 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0016 14 6 1.7467 -7.2471 0.0027 15 8 0.5513 -7.4693 0.0028 16 7 2.6226 -8.2715 0.0037 17 7 3.9999 -8.0154 0.0041 18 6 4.9081 -9.0777 0.0046 19 6 4.4469 -10.3874 0.0041 20 6 5.3478 -11.4358 0.0040 21 17 4.7724 -13.0736 0.0041 22 6 6.7082 -11.1810 0.0050 23 6 7.1706 -9.8780 0.0051 24 6 6.2749 -8.8253 0.0052 25 17 6.8566 -7.1897 -0.0014 26 1 -0.4849 0.8400 -0.0004 27 1 0.3535 -2.3906 0.0005 28 1 0.6169 -4.9209 -0.8886 29 1 0.6176 -4.9204 0.8913 30 1 3.1496 -5.7992 0.0019 31 1 2.2992 -9.1861 0.0041 32 1 4.3233 -7.1010 0.0033 33 1 3.3854 -10.5868 0.0040 34 1 7.4101 -12.0018 0.0054 35 1 8.2327 -9.6825 0.0054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807554116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:56 Heat of formation + Delta-G solvation = -28.772562 kcal Electronic energy + Delta-G solvation = -24169.756971 eV Core-core repulsion = 20062.325118 eV Total energy + Delta-G solvation = -4107.431853 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.039 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68631 -40.64505 -40.00747 -37.94815 -37.58194 -37.01936 -36.29983 -35.37931 -33.41005 -33.10827 -31.72126 -29.44191 -29.03964 -26.46852 -24.24564 -23.51467 -22.22665 -21.46202 -20.44941 -19.89927 -19.74415 -17.86732 -17.64747 -17.30263 -17.12402 -16.70377 -16.54638 -16.23140 -15.93866 -15.78215 -15.70794 -15.27209 -15.19382 -14.84993 -14.00835 -13.89854 -13.55441 -13.54728 -13.35858 -13.17766 -12.91455 -12.90692 -12.47550 -12.14912 -12.05968 -11.96619 -11.89161 -11.80855 -11.57069 -10.71197 -10.58449 -10.31061 -10.10039 -9.81169 -8.52630 -8.51640 -6.01667 -0.11324 0.21652 0.63802 0.94472 1.18070 1.37265 1.42540 1.52863 1.75565 1.78877 1.90759 2.28563 2.43062 3.05053 3.15687 3.47999 3.51718 4.00759 4.08757 4.13913 4.27893 4.40424 4.41557 4.58364 4.64877 5.01531 5.05759 5.06585 5.14871 5.37669 5.47531 5.75926 5.90879 6.13541 6.46763 6.83868 7.02598 7.21157 7.42940 7.92898 8.64811 Molecular weight = 346.04amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.002221 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.446835 B =12603.970701 C =14073.272590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.556 5.556 10 C 0.431 3.569 11 O -0.624 6.624 12 C 0.137 3.863 13 N -0.722 5.722 14 C 0.717 3.283 15 O -0.604 6.604 16 N -0.519 5.519 17 N -0.542 5.542 18 C 0.230 3.770 19 C -0.186 4.186 20 C 0.017 3.983 21 Cl -0.056 7.056 22 C -0.149 4.149 23 C -0.038 4.038 24 C -0.117 4.117 25 Cl -0.064 7.064 26 H 0.280 0.720 27 H 0.400 0.600 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.404 0.596 31 H 0.442 0.558 32 H 0.428 0.572 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 -23.286 0.009 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.192 5.192 10 C 0.218 3.782 11 O -0.512 6.512 12 C 0.009 3.991 13 N -0.381 5.381 14 C 0.416 3.584 15 O -0.481 6.481 16 N -0.274 5.274 17 N -0.273 5.273 18 C 0.125 3.875 19 C -0.210 4.210 20 C -0.011 4.011 21 Cl -0.027 7.027 22 C -0.170 4.170 23 C -0.057 4.057 24 C -0.150 4.150 25 Cl -0.035 7.035 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.242 0.758 31 H 0.290 0.710 32 H 0.273 0.727 33 H 0.163 0.837 34 H 0.183 0.817 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.614 -23.089 0.009 25.845 hybrid contribution -0.005 1.108 -0.002 1.108 sum 11.609 -21.980 0.007 24.858 Atomic orbital electron populations 1.69668 1.06951 1.29711 1.49094 1.26112 0.96531 1.02636 0.95785 0.84950 0.77745 0.76357 0.79083 1.19527 1.19666 1.19516 1.19686 0.92967 0.83495 1.50473 0.89543 1.41804 1.09630 1.04509 1.63228 1.20369 0.88138 0.85887 0.83787 1.90475 1.15120 1.87493 1.58117 1.20730 0.90791 0.82697 1.04883 1.44731 1.11024 1.03572 1.78747 1.15522 0.84079 0.80426 0.78344 1.91010 1.13275 1.83258 1.60543 1.44186 0.93293 1.09115 1.80827 1.43567 0.92799 1.07675 1.83231 1.17269 0.86914 0.87269 0.96041 1.20304 1.00817 0.88777 1.11121 1.20753 0.94009 0.85694 1.00607 1.98400 1.89262 1.18458 1.96564 1.21105 0.93408 0.97524 1.04928 1.21082 1.00560 0.89538 0.94503 1.20528 0.91106 0.87560 1.15802 1.98417 1.88242 1.19576 1.97315 0.91047 0.76599 0.88190 0.88202 0.75801 0.70967 0.72703 0.83705 0.81681 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.87 13.05 21.66 0.28 -47.59 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 41.24 29.55 68.60 2.03 43.26 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.34 -18.21 9.68 84.04 0.81 -17.40 16 8 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -27.22 5.29 -306.99 -1.62 -28.84 16 10 C 0.43 19.28 7.85 87.65 0.69 19.97 16 11 O -0.62 -31.24 15.24 -3.08 -0.05 -31.28 16 12 C 0.14 4.80 6.15 85.63 0.53 5.33 16 13 N -0.72 -23.09 5.49 -482.31 -2.65 -25.74 16 14 C 0.72 21.57 8.68 179.05 1.55 23.12 16 15 O -0.60 -21.47 17.18 -4.02 -0.07 -21.54 16 16 N -0.52 -11.85 6.22 -184.74 -1.15 -13.00 16 17 N -0.54 -11.72 6.41 -51.30 -0.33 -12.05 16 18 C 0.23 4.30 6.72 38.21 0.26 4.55 16 19 C -0.19 -2.97 9.26 22.42 0.21 -2.76 16 20 C 0.02 0.24 6.32 22.31 0.14 0.38 16 21 Cl -0.06 -0.74 28.95 -2.72 -0.08 -0.82 16 22 C -0.15 -1.66 9.82 22.31 0.22 -1.44 16 23 C -0.04 -0.46 9.82 22.27 0.22 -0.24 16 24 C -0.12 -2.03 6.34 22.45 0.14 -1.89 16 25 Cl -0.06 -1.29 27.59 -2.72 -0.08 -1.37 16 26 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 27 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 28 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.40 12.96 5.36 -92.71 -0.50 12.46 16 31 H 0.44 8.19 6.71 -213.32 -1.43 6.76 16 32 H 0.43 10.16 5.37 -213.33 -1.15 9.01 16 33 H 0.15 2.00 6.20 -2.91 -0.02 1.98 16 34 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -64.09 341.84 -1.05 -65.14 By element: Atomic # 1 Polarization: 46.81 SS G_CDS: -2.58 Total: 44.23 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 5.23 Total: 29.59 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -5.47 Total: -127.21 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.12 Total: -52.82 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.15 Total: -2.19 kcal Total: -64.09 -1.05 -65.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807554116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds