Wall clock time and date at job start Sat Apr 11 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.38246 * 119.98474 * 259.72732 * 14 13 12 16 16 C 1.38340 * 120.01044 * 179.73072 * 15 14 13 17 17 Cl 1.73599 * 120.00483 * 180.27582 * 16 15 14 18 18 C 1.38354 * 119.98530 * 0.52202 * 16 15 14 19 19 C 1.38310 * 119.97264 * 359.74976 * 18 16 15 20 20 Cl 1.73604 * 120.00327 * 180.02562 * 19 18 16 21 21 C 1.38192 * 119.98621 * 80.00317 * 14 13 12 22 22 N 1.48017 * 119.99630 * 359.97438 * 21 14 13 23 23 O 1.21796 * 120.00005 * 89.99877 * 22 21 14 24 24 O 1.21797 * 119.99817 * 270.00265 * 22 21 14 25 25 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 28 28 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 29 29 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 30 30 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 31 31 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 32 32 H 1.08000 * 119.99347 * 0.02562 * 15 14 13 33 33 H 1.07999 * 120.01162 * 179.77424 * 18 16 15 34 34 H 1.08999 * 113.76060 * 220.99233 * 25 12 11 35 35 H 1.09001 * 113.85944 * 89.64050 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.8973 -4.5532 4.3028 16 6 0.0064 -4.8718 5.3122 17 17 -0.0919 -3.8749 6.7300 18 6 -0.8025 -5.9879 5.1936 19 6 -0.7236 -6.7816 4.0637 20 17 -1.7387 -8.1819 3.9138 21 6 0.1642 -6.4590 3.0524 22 7 0.2484 -7.3080 1.8429 23 8 1.0261 -8.2447 1.8093 24 8 -0.4601 -7.0699 0.8813 25 6 2.1616 -3.7403 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3760 -1.7802 -0.9686 28 1 1.3962 -2.5374 2.2102 29 1 -0.2739 -2.8571 1.5667 30 1 2.3964 -5.9035 1.6843 31 1 2.7125 -4.3337 2.4616 32 1 1.5314 -3.6840 4.3969 33 1 -1.4955 -6.2391 5.9829 34 1 2.1778 -4.2727 -0.9521 35 1 3.1583 -3.5539 0.3988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811491788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:09 Heat of formation + Delta-G solvation = 5.870990 kcal Electronic energy + Delta-G solvation = -26020.424394 eV Core-core repulsion = 21882.202048 eV Total energy + Delta-G solvation = -4138.222347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.032 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15359 -40.17196 -38.98830 -37.39865 -36.95353 -36.29972 -34.65663 -32.65589 -32.12502 -31.86918 -28.71897 -26.62200 -25.89964 -25.23988 -23.51401 -22.87590 -21.47281 -19.30647 -18.75793 -18.59523 -17.84179 -17.52232 -17.12111 -15.91318 -15.55099 -15.42335 -15.18866 -14.68872 -14.50642 -14.29242 -13.91803 -13.70045 -12.93046 -12.91247 -12.54265 -12.22530 -12.09569 -11.82945 -11.65966 -11.52066 -11.45865 -11.41744 -11.17313 -11.03568 -10.93287 -10.87318 -10.81424 -10.47872 -10.17016 -9.71755 -9.53022 -9.31659 -8.72609 -8.40366 -8.00904 -6.34811 -4.45768 0.01952 0.33152 0.66114 1.07414 1.25240 1.69401 2.58763 3.14380 3.21151 3.23002 3.78260 4.17309 4.25116 4.27817 4.31587 4.61883 4.74250 4.87897 4.91978 5.06508 5.36787 5.42672 5.51568 5.69787 5.75131 5.85861 6.12418 6.15731 6.37203 6.55523 6.84806 6.91498 7.20626 7.66575 7.67004 7.71237 7.89394 8.56066 9.25055 9.58669 10.70972 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.003914 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.877092 B = 7151.799327 C = 8678.626721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.568 6.568 11 C -0.017 4.017 12 N -0.468 5.468 13 C 0.035 3.965 14 C 0.008 3.992 15 C -0.088 4.088 16 C 0.008 3.992 17 Cl -0.033 7.033 18 C -0.100 4.100 19 C 0.010 3.990 20 Cl -0.025 7.025 21 C 0.001 3.999 22 N 0.021 4.979 23 O -0.157 6.157 24 O -0.086 6.086 25 C 0.010 3.990 26 H 0.273 0.727 27 H 0.390 0.610 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 -10.080 13.658 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.380 6.380 11 C -0.146 4.146 12 N -0.191 5.191 13 C -0.093 4.093 14 C 0.006 3.994 15 C -0.108 4.108 16 C -0.019 4.019 17 Cl -0.004 7.004 18 C -0.120 4.120 19 C -0.019 4.019 20 Cl 0.004 6.996 21 C -0.081 4.081 22 N 0.554 4.446 23 O -0.372 6.372 24 O -0.320 6.320 25 C -0.118 4.118 26 H 0.083 0.917 27 H 0.245 0.755 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.100 0.900 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.003 -10.645 14.101 17.697 hybrid contribution 0.670 1.686 0.546 1.894 sum -0.333 -8.960 14.648 17.174 Atomic orbital electron populations 1.69337 1.06117 1.28062 1.50057 1.25047 0.94961 0.99645 0.93247 0.86471 0.79576 0.82048 0.78869 1.20953 1.20094 1.19867 1.21587 0.93628 0.90598 1.52134 0.91647 1.19638 0.85136 0.90600 0.83764 1.86072 1.45066 1.50237 1.56636 1.24828 1.00885 0.86658 1.02188 1.68902 1.25932 1.17129 1.07090 1.21935 0.93795 1.01896 0.91659 1.19559 0.94407 0.89804 0.95646 1.21168 0.98706 1.00099 0.90837 1.20930 0.97134 0.93221 0.90649 1.98428 1.97320 1.67707 1.36913 1.20838 1.00668 0.93331 0.97198 1.20283 0.94476 0.92770 0.94340 1.98453 1.66019 1.37493 1.97646 1.20548 1.03097 0.96510 0.87946 1.43149 0.99765 1.00042 1.01606 1.94543 1.33893 1.20495 1.88253 1.94656 1.38741 1.73973 1.24667 1.24217 0.94921 0.96601 0.96025 0.91704 0.75518 0.92117 0.90708 0.89660 0.91326 0.82080 0.81911 0.89973 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.17 11.09 55.43 0.61 -22.55 16 2 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 3 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.74 8.62 -34.44 -0.30 -14.04 16 8 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.25 6.04 1.44 -90.84 -0.13 5.91 16 10 O -0.57 -15.08 13.48 -35.23 -0.47 -15.56 16 11 C -0.02 -0.36 6.71 -2.77 -0.02 -0.37 16 12 N -0.47 -9.22 6.25 -239.69 -1.50 -10.71 16 13 C 0.04 0.56 4.58 -4.97 -0.02 0.53 16 14 C 0.01 0.11 4.96 -104.63 -0.52 -0.41 16 15 C -0.09 -1.06 9.27 -39.54 -0.37 -1.43 16 16 C 0.01 0.08 6.32 -39.50 -0.25 -0.17 16 17 Cl -0.03 -0.31 28.96 -51.86 -1.50 -1.81 16 18 C -0.10 -1.03 9.62 -39.51 -0.38 -1.41 16 19 C 0.01 0.12 6.32 -39.50 -0.25 -0.13 16 20 Cl -0.03 -0.30 28.44 -51.86 -1.47 -1.78 16 21 C 0.00 0.02 6.11 -79.91 -0.49 -0.47 16 22 N 0.02 0.36 2.87 33.98 0.10 0.45 16 23 O -0.16 -2.66 19.24 -29.46 -0.57 -3.22 16 24 O -0.09 -1.62 19.25 -29.46 -0.57 -2.19 16 25 C 0.01 0.22 7.36 -2.77 -0.02 0.20 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.39 10.50 6.46 45.56 0.29 10.79 16 28 H 0.06 1.22 7.73 -51.93 -0.40 0.82 16 29 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.09 1.34 7.77 -51.93 -0.40 0.94 16 31 H 0.07 0.97 7.55 -51.93 -0.39 0.58 16 32 H 0.16 1.72 8.03 -52.49 -0.42 1.30 16 33 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.07 1.29 7.75 -51.93 -0.40 0.89 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -27.48 342.89 -10.60 -38.08 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -2.54 Total: 9.52 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.84 Total: -10.01 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: -0.79 Total: -32.81 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.61 Total: -20.97 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -2.98 Total: -3.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.48 -10.60 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811491788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.954 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds