Wall clock time and date at job start Sat Apr 11 2020 07:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.38246 * 119.98474 * 259.72732 * 14 13 12 16 16 C 1.38340 * 120.01044 * 179.73072 * 15 14 13 17 17 Cl 1.73599 * 120.00483 * 180.27582 * 16 15 14 18 18 C 1.38354 * 119.98530 * 0.52202 * 16 15 14 19 19 C 1.38310 * 119.97264 * 359.74976 * 18 16 15 20 20 Cl 1.73604 * 120.00327 * 180.02562 * 19 18 16 21 21 C 1.38192 * 119.98621 * 80.00317 * 14 13 12 22 22 N 1.48017 * 119.99630 * 359.97438 * 21 14 13 23 23 O 1.21796 * 120.00005 * 89.99877 * 22 21 14 24 24 O 1.21797 * 119.99817 * 270.00265 * 22 21 14 25 25 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 28 28 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 29 29 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 30 30 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 31 31 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 32 32 H 1.08000 * 119.99347 * 0.02562 * 15 14 13 33 33 H 1.07999 * 120.01162 * 179.77424 * 18 16 15 34 34 H 1.08999 * 113.76060 * 220.99233 * 25 12 11 35 35 H 1.09001 * 113.85944 * 89.64050 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.8973 -4.5532 4.3028 16 6 0.0064 -4.8718 5.3122 17 17 -0.0919 -3.8749 6.7300 18 6 -0.8025 -5.9879 5.1936 19 6 -0.7236 -6.7816 4.0637 20 17 -1.7387 -8.1819 3.9138 21 6 0.1642 -6.4590 3.0524 22 7 0.2484 -7.3080 1.8429 23 8 1.0261 -8.2447 1.8093 24 8 -0.4601 -7.0699 0.8813 25 6 2.1616 -3.7403 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3760 -1.7802 -0.9686 28 1 1.3962 -2.5374 2.2102 29 1 -0.2739 -2.8571 1.5667 30 1 2.3964 -5.9035 1.6843 31 1 2.7125 -4.3337 2.4616 32 1 1.5314 -3.6840 4.3969 33 1 -1.4955 -6.2391 5.9829 34 1 2.1778 -4.2727 -0.9521 35 1 3.1583 -3.5539 0.3988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811491788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:08 Heat of formation + Delta-G solvation = -11.511420 kcal Electronic energy + Delta-G solvation = -26021.178152 eV Core-core repulsion = 21882.202048 eV Total energy + Delta-G solvation = -4138.976105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.032 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.40476 -41.39018 -40.43034 -38.31531 -37.86402 -37.62666 -36.37727 -34.13295 -33.83224 -32.91132 -30.15952 -28.06155 -27.35627 -26.89258 -24.83684 -24.04246 -22.75437 -20.63083 -20.35761 -19.89542 -19.28012 -18.99689 -18.22283 -17.15793 -17.09095 -16.88814 -16.48060 -16.14418 -15.82564 -15.56207 -15.36782 -14.83908 -14.30865 -13.96176 -13.81538 -13.79504 -13.40912 -13.32100 -12.98750 -12.85222 -12.75725 -12.68630 -12.62658 -12.41906 -12.28824 -12.27500 -12.26568 -12.14895 -12.03378 -11.28222 -10.67798 -10.52743 -10.42311 -10.14868 -9.69682 -8.24280 -6.42574 -0.98310 -0.70462 -0.61502 0.02171 0.24266 0.76689 1.43443 1.46482 1.53414 1.62184 2.37500 2.73535 2.94098 3.03771 3.26986 3.31889 3.45989 3.66488 3.85012 3.99719 4.06757 4.15897 4.21763 4.38214 4.43371 4.50343 4.57283 4.73416 4.84692 5.08094 5.09441 5.30137 5.34862 5.74249 5.97331 6.10628 6.33179 6.62935 7.31034 7.54379 8.80399 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.003914 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.877092 B = 7151.799327 C = 8678.626721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.032 3.968 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.266 1.266 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.221 3.779 10 O -0.586 6.586 11 C 0.004 3.996 12 N -0.478 5.478 13 C 0.037 3.963 14 C -0.009 4.009 15 C -0.084 4.084 16 C 0.014 3.986 17 Cl -0.013 7.013 18 C -0.082 4.082 19 C 0.003 3.997 20 Cl -0.021 7.021 21 C -0.017 4.017 22 N 0.026 4.974 23 O -0.139 6.139 24 O -0.144 6.144 25 C 0.018 3.982 26 H 0.274 0.726 27 H 0.383 0.617 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.196 0.804 34 H 0.072 0.928 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -9.682 16.210 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.190 1.190 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.086 0.914 9 C 0.180 3.820 10 O -0.398 6.398 11 C -0.125 4.125 12 N -0.201 5.201 13 C -0.090 4.090 14 C -0.011 4.011 15 C -0.104 4.104 16 C -0.013 4.013 17 Cl 0.016 6.984 18 C -0.101 4.101 19 C -0.026 4.026 20 Cl 0.008 6.992 21 C -0.099 4.099 22 N 0.556 4.444 23 O -0.363 6.363 24 O -0.366 6.366 25 C -0.110 4.110 26 H 0.083 0.917 27 H 0.237 0.763 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.194 0.806 33 H 0.213 0.787 34 H 0.090 0.910 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.230 -10.212 16.605 19.495 hybrid contribution 0.443 1.483 -0.112 1.552 sum 0.213 -8.728 16.493 18.661 Atomic orbital electron populations 1.69425 1.07245 1.28702 1.50485 1.25760 0.95666 1.02567 0.92880 0.85511 0.78335 0.78264 0.78930 1.20875 1.19029 1.20059 1.21861 0.93900 0.91524 1.52464 0.91411 1.20072 0.85436 0.91751 0.84790 1.86059 1.45716 1.49955 1.58059 1.24495 0.99545 0.87589 1.00895 1.68753 1.26633 1.16296 1.08438 1.21901 0.94375 1.01698 0.91068 1.19459 0.94911 0.90477 0.96221 1.21324 0.98942 0.99886 0.90242 1.20984 0.96308 0.93230 0.90819 1.98446 1.97163 1.67133 1.35628 1.21199 1.00115 0.92085 0.96737 1.20436 0.94243 0.93420 0.94459 1.98456 1.65747 1.37305 1.97683 1.20700 1.04866 0.96987 0.87347 1.43453 0.98986 0.99909 1.02046 1.94498 1.32988 1.20545 1.88285 1.94666 1.40392 1.75199 1.26341 1.24145 0.95542 0.94944 0.96343 0.91654 0.76327 0.90781 0.93014 0.89845 0.89216 0.80634 0.78705 0.90973 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.84 11.09 21.45 0.24 -47.60 16 2 C 0.03 1.58 5.40 84.66 0.46 2.04 16 3 Si 0.96 39.69 29.54 68.60 2.03 41.72 16 4 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.56 -28.28 8.62 25.60 0.22 -28.06 16 8 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 9 C 0.22 10.74 1.44 -10.89 -0.02 10.73 16 10 O -0.59 -32.12 13.48 -148.98 -2.01 -34.13 16 11 C 0.00 0.17 6.71 86.41 0.58 0.75 16 12 N -0.48 -18.81 6.25 -915.44 -5.72 -24.54 16 13 C 0.04 1.14 4.58 85.56 0.39 1.53 16 14 C -0.01 -0.24 4.96 -19.87 -0.10 -0.33 16 15 C -0.08 -1.82 9.27 22.30 0.21 -1.61 16 16 C 0.01 0.26 6.32 22.32 0.14 0.40 16 17 Cl -0.01 -0.20 28.96 -2.72 -0.08 -0.28 16 18 C -0.08 -1.43 9.62 22.31 0.21 -1.22 16 19 C 0.00 0.07 6.32 22.32 0.14 0.21 16 20 Cl -0.02 -0.48 28.44 -2.72 -0.08 -0.55 16 21 C -0.02 -0.49 6.11 36.40 0.22 -0.27 16 22 N 0.03 0.88 2.87 -46.41 -0.13 0.75 16 23 O -0.14 -4.65 19.24 18.89 0.36 -4.29 16 24 O -0.14 -5.65 19.25 18.89 0.36 -5.28 16 25 C 0.02 0.76 7.36 86.41 0.64 1.40 16 26 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 27 H 0.38 21.41 6.46 -74.05 -0.48 20.93 16 28 H 0.07 2.89 7.73 -2.39 -0.02 2.87 16 29 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 2.56 7.77 -2.39 -0.02 2.54 16 31 H 0.09 2.34 7.55 -2.39 -0.02 2.32 16 32 H 0.18 3.23 8.03 -2.91 -0.02 3.20 16 33 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.09 3.27 7.75 -2.39 -0.02 3.25 16 Total: -1.00 -59.83 342.89 -1.24 -61.07 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.69 Total: 27.58 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 3.10 Total: -14.44 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -5.62 Total: -71.39 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.28 Total: -43.70 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.16 Total: -0.84 kcal Total: -59.83 -1.24 -61.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811491788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.561 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds