Wall clock time and date at job start Sat Apr 11 2020 07:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00522 * 2 1 4 4 H 1.48496 * 109.47434 * 270.00814 * 3 2 1 5 5 H 1.48506 * 109.47033 * 30.00606 * 3 2 1 6 6 H 1.48500 * 109.47377 * 150.00239 * 3 2 1 7 7 C 1.37878 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00175 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47089 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99852 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00360 * 179.97438 * 11 10 9 14 14 S 1.65599 * 120.00246 * 180.02562 * 13 11 10 15 15 O 1.42106 * 106.40227 * 311.45555 * 14 13 11 16 16 O 1.42100 * 106.40324 * 178.54068 * 14 13 11 17 17 C 1.76199 * 107.21905 * 64.99900 * 14 13 11 18 18 C 1.38217 * 119.98794 * 269.72569 * 17 14 13 19 19 C 1.38434 * 119.97514 * 179.72672 * 18 17 14 20 20 F 1.35104 * 120.02997 * 180.29857 * 19 18 17 21 21 C 1.38486 * 119.94867 * 0.54931 * 19 18 17 22 22 C 1.38179 * 119.97100 * 359.72602 * 21 19 18 23 23 N 1.48004 * 119.98579 * 180.02562 * 22 21 19 24 24 O 1.21801 * 120.00004 * 179.97438 * 23 22 21 25 25 O 1.21802 * 119.99828 * 359.97310 * 23 22 21 26 26 C 1.38220 * 119.98739 * 90.00053 * 17 14 13 27 27 H 0.97006 * 119.99521 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47695 * 59.99908 * 9 7 2 29 29 H 1.09002 * 109.46933 * 299.99520 * 9 7 2 30 30 H 1.08997 * 109.47172 * 59.99931 * 10 9 7 31 31 H 1.08998 * 109.47070 * 300.00022 * 10 9 7 32 32 H 0.97005 * 119.99606 * 359.97438 * 13 11 10 33 33 H 1.07997 * 120.01181 * 0.02562 * 18 17 14 34 34 H 1.07991 * 120.01441 * 179.74745 * 21 19 18 35 35 H 1.08006 * 119.97274 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4915 -4.9672 -0.0012 12 8 0.2786 -4.9671 0.0006 13 7 2.1652 -6.1345 -0.0026 14 16 1.3371 -7.5685 -0.0026 15 8 0.3560 -7.4653 1.0203 16 8 2.3165 -8.5975 -0.0390 17 6 0.4586 -7.6636 -1.5270 18 6 -0.8270 -7.1637 -1.6158 19 6 -1.5149 -7.2335 -2.8151 20 9 -2.7693 -6.7398 -2.9048 21 6 -0.9182 -7.8144 -3.9216 22 6 0.3650 -8.3186 -3.8289 23 7 1.0033 -8.9390 -5.0114 24 8 2.1345 -9.3830 -4.9300 25 8 0.3972 -9.0054 -6.0658 26 6 1.0532 -8.2432 -2.6320 27 1 -0.4850 0.8401 0.0004 28 1 0.6238 -2.5567 -0.8902 29 1 0.6246 -2.5570 0.8897 30 1 2.8724 -3.6049 0.8877 31 1 2.8710 -3.6041 -0.8923 32 1 3.1352 -6.1345 -0.0045 33 1 -1.2928 -6.7146 -0.7512 34 1 -1.4553 -7.8730 -4.8566 35 1 2.0563 -8.6371 -2.5606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813061502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:15 Heat of formation + Delta-G solvation = -154.874854 kcal Electronic energy + Delta-G solvation = -27714.153214 eV Core-core repulsion = 23142.667736 eV Total energy + Delta-G solvation = -4571.485479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.056 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.46676 -43.52718 -41.24630 -40.64654 -38.70520 -37.90838 -37.40224 -35.67304 -35.60930 -33.74349 -32.97308 -32.63510 -28.14416 -27.97324 -25.32903 -24.45378 -24.10019 -21.98352 -21.63650 -20.68315 -20.08410 -19.23839 -19.02868 -18.87036 -18.55424 -18.19444 -17.96531 -17.69590 -17.49811 -17.17207 -16.70063 -16.48248 -16.28948 -15.53301 -15.00579 -14.54206 -14.43880 -14.31834 -14.15575 -14.01769 -13.86424 -13.59132 -13.43698 -13.28289 -12.98532 -12.90299 -12.83404 -12.49351 -12.45807 -12.45417 -12.04194 -11.90688 -11.73671 -11.57506 -11.33900 -11.09565 -10.71920 -10.54067 -8.17239 -6.29402 -1.69727 -1.33028 -1.02601 -0.19092 -0.07868 0.96963 1.24237 1.45131 1.45817 1.54233 1.56695 2.20997 2.27400 2.43414 2.86278 2.98877 3.06483 3.17719 3.27652 3.28780 3.45347 3.69929 3.89312 3.96171 4.18005 4.24410 4.44788 4.54828 4.70177 5.00766 5.05004 5.53280 5.63213 5.65014 5.86756 6.16888 6.25025 6.46170 6.90695 7.41036 8.94718 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003119 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.348132 B = 8973.735788 C = 9628.854296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.255 1.255 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.033 3.967 10 C -0.124 4.124 11 C 0.539 3.461 12 O -0.524 6.524 13 N -1.033 6.033 14 S 2.706 3.294 15 O -0.948 6.948 16 O -0.932 6.932 17 C -0.654 4.654 18 C 0.008 3.992 19 C 0.088 3.912 20 F -0.116 7.116 21 C -0.025 4.025 22 C -0.048 4.048 23 N 0.030 4.970 24 O -0.148 6.148 25 O -0.157 6.157 26 C 0.043 3.957 27 H 0.261 0.739 28 H -0.008 1.008 29 H -0.009 1.009 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.458 0.542 33 H 0.172 0.828 34 H 0.197 0.803 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -18.465 -5.651 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.097 0.903 9 C -0.005 4.005 10 C -0.165 4.165 11 C 0.329 3.671 12 O -0.397 6.397 13 N -0.804 5.804 14 S 2.794 3.206 15 O -0.939 6.939 16 O -0.923 6.923 17 C -0.740 4.740 18 C -0.011 4.011 19 C 0.067 3.933 20 F -0.094 7.094 21 C -0.045 4.045 22 C -0.131 4.131 23 N 0.551 4.449 24 O -0.366 6.366 25 O -0.373 6.373 26 C 0.023 3.977 27 H 0.070 0.930 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.300 0.700 33 H 0.190 0.810 34 H 0.214 0.786 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.143 -18.643 -4.440 19.420 hybrid contribution -0.185 1.194 -0.966 1.547 sum 2.958 -17.449 -5.405 18.505 Atomic orbital electron populations 1.70147 1.08106 1.27659 1.51617 1.26014 0.95609 1.03594 0.94899 0.85441 0.78828 0.78383 0.78331 1.20018 1.21689 1.17913 1.21713 0.94161 0.91518 1.50432 0.90345 1.18816 0.93914 0.92146 0.95639 1.21893 0.99684 0.88179 1.06768 1.21498 0.87911 0.86669 0.71056 1.90816 1.15238 1.87334 1.46337 1.54756 1.23224 1.21597 1.80784 1.01996 0.73198 0.72425 0.72963 1.93657 1.61462 1.85504 1.53238 1.93671 1.59202 1.52913 1.86466 1.30859 1.07678 1.13801 1.21656 1.21656 0.92204 0.88703 0.98581 1.17235 0.82058 1.00284 0.93722 1.91640 1.36154 1.85095 1.96544 1.21392 0.92329 0.89912 1.00874 1.20789 0.95904 1.09022 0.87426 1.43457 1.00739 0.98718 1.01972 1.94584 1.03120 1.48145 1.90776 1.94579 1.64682 1.61494 1.16535 1.21043 1.01315 0.87889 0.87425 0.93005 0.98933 0.99079 0.85969 0.85665 0.70008 0.81037 0.78598 0.78347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.69 13.29 21.45 0.28 -55.41 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 41.69 29.54 68.60 2.03 43.71 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.54 -27.69 9.11 25.60 0.23 -27.46 16 8 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.57 4.26 29.85 0.13 1.70 16 10 C -0.12 -3.81 5.64 29.85 0.17 -3.64 16 11 C 0.54 15.28 7.66 87.66 0.67 15.95 16 12 O -0.52 -19.14 13.21 13.27 0.18 -18.96 16 13 N -1.03 -18.71 5.70 -173.53 -0.99 -19.70 16 14 S 2.71 55.77 5.40 -56.49 -0.30 55.47 16 15 O -0.95 -27.25 16.22 -120.89 -1.96 -29.21 16 16 O -0.93 -18.79 17.28 -128.00 -2.21 -21.00 16 17 C -0.65 -12.90 5.74 22.26 0.13 -12.77 16 18 C 0.01 0.19 8.51 22.31 0.19 0.38 16 19 C 0.09 1.79 7.30 22.38 0.16 1.95 16 20 F -0.12 -2.58 17.27 44.97 0.78 -1.81 16 21 C -0.03 -0.43 9.54 22.31 0.21 -0.22 16 22 C -0.05 -0.88 6.85 36.37 0.25 -0.63 16 23 N 0.03 0.63 4.45 -46.49 -0.21 0.42 16 24 O -0.15 -3.25 18.45 18.88 0.35 -2.90 16 25 O -0.16 -3.47 18.45 18.88 0.35 -3.12 16 26 C 0.04 0.73 9.03 22.27 0.20 0.94 16 27 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 28 H -0.01 -0.42 8.10 -2.39 -0.02 -0.44 16 29 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 30 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.13 3.08 8.14 -2.39 -0.02 3.07 16 32 H 0.46 3.99 8.83 -96.74 -0.85 3.14 16 33 H 0.17 4.28 6.87 -2.91 -0.02 4.26 16 34 H 0.20 2.43 7.61 -2.92 -0.02 2.40 16 35 H 0.20 2.45 7.17 -2.91 -0.02 2.43 16 Total: -1.00 -74.71 338.68 1.43 -73.29 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 0.33 Total: 2.74 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 2.81 Total: -23.52 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -0.91 Total: -74.68 kcal Atomic # 8 Polarization: -71.90 SS G_CDS: -3.30 Total: -75.20 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 55.77 SS G_CDS: -0.30 Total: 55.47 kcal Total: -74.71 1.43 -73.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813061502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.588 kcal (2) G-P(sol) polarization free energy of solvation -74.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds