Wall clock time and date at job start Sat Apr 11 2020 07:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99796 * 2 1 4 4 N 1.46502 * 109.47089 * 125.00381 * 3 2 1 5 5 C 1.46500 * 119.99809 * 275.00098 * 4 3 2 6 6 C 1.50707 * 109.46891 * 274.99929 * 5 4 3 7 7 H 1.07994 * 120.00198 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99421 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00684 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99694 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46997 * 60.00065 * 10 8 6 12 12 H 1.48506 * 109.47227 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47357 * 300.00330 * 10 8 6 14 14 S 1.65596 * 120.00138 * 95.00250 * 4 3 2 15 15 O 1.42101 * 106.40411 * 156.46321 * 14 4 3 16 16 O 1.42095 * 106.40250 * 23.53886 * 14 4 3 17 17 C 1.76197 * 107.21602 * 269.99831 * 14 4 3 18 18 C 1.38203 * 120.37780 * 90.00028 * 17 14 4 19 19 N 1.31884 * 120.90235 * 180.02562 * 18 17 14 20 20 C 1.31910 * 121.76190 * 359.97260 * 19 18 17 21 21 Cl 1.73599 * 119.67522 * 179.97438 * 20 19 18 22 22 C 1.38865 * 120.65692 * 0.02562 * 20 19 18 23 23 O 1.35934 * 120.47962 * 179.97438 * 22 20 19 24 24 C 1.42903 * 117.00080 * 179.97438 * 23 22 20 25 25 C 1.38599 * 120.37799 * 270.28037 * 17 14 4 26 26 H 1.07991 * 120.00263 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99455 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00255 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47299 * 5.00258 * 3 2 1 30 30 H 1.08996 * 109.47551 * 245.00163 * 3 2 1 31 31 H 1.09002 * 109.47090 * 34.99758 * 5 4 3 32 32 H 1.08995 * 109.47383 * 155.00160 * 5 4 3 33 33 H 0.96995 * 120.00194 * 179.97438 * 9 8 6 34 34 H 1.07999 * 119.54486 * 0.02562 * 18 17 14 35 35 H 1.09002 * 109.47382 * 300.00508 * 24 23 22 36 36 H 1.09001 * 109.46938 * 180.02562 * 24 23 22 37 37 H 1.09004 * 109.46926 * 60.00616 * 24 23 22 38 38 H 1.07994 * 120.80385 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5991 3.2646 2.5450 7 1 2.9546 3.8414 1.7040 8 6 2.2089 3.9028 3.7031 9 7 1.7755 3.2005 4.7271 10 14 2.2971 5.7652 3.8184 11 1 1.4358 6.3673 2.7692 12 1 1.8253 6.2012 5.1573 13 1 3.7008 6.2075 3.6204 14 16 4.5713 0.8760 0.9172 15 8 5.3148 1.5046 1.9523 16 8 4.8567 1.0546 -0.4633 17 6 4.6595 -0.8569 1.2234 18 6 4.4760 -1.7590 0.1926 19 7 4.5394 -3.0582 0.4102 20 6 4.7790 -3.5504 1.6103 21 17 4.8500 -5.2702 1.8355 22 6 4.9740 -2.7064 2.6957 23 8 5.2202 -3.2175 3.9310 24 6 5.4101 -2.2818 4.9942 25 6 4.9080 -1.3310 2.5018 26 1 -0.5400 0.9352 0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4027 -0.9313 31 1 1.4983 1.4370 2.5982 32 1 3.1613 1.3204 3.2220 33 1 1.5014 3.6495 5.5420 34 1 4.2781 -1.3950 -0.8048 35 1 6.2624 -1.6415 4.7669 36 1 5.5981 -2.8204 5.9230 37 1 4.5148 -1.6697 5.1037 38 1 5.0512 -0.6487 3.3266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813722294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:27 Heat of formation + Delta-G solvation = -49.034280 kcal Electronic energy + Delta-G solvation = -26573.449755 eV Core-core repulsion = 22570.723338 eV Total energy + Delta-G solvation = -4002.726417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91470 -38.47553 -36.93890 -36.86578 -36.50131 -35.43984 -33.31122 -32.63513 -32.00223 -30.95932 -27.75912 -27.58722 -25.07206 -24.23272 -23.44601 -22.42067 -19.95749 -19.24394 -18.17198 -17.70182 -17.36580 -16.93467 -16.62007 -16.22307 -16.14095 -15.71413 -14.76562 -14.64009 -14.48899 -14.36057 -13.91815 -13.77417 -13.20069 -13.11408 -12.57001 -12.31946 -12.06186 -12.01895 -11.88635 -11.72480 -11.67179 -11.60193 -11.41538 -11.25590 -11.21651 -11.01547 -10.81206 -10.62662 -10.25202 -10.10533 -10.00280 -9.84724 -9.20000 -8.75193 -8.53433 -8.27496 -6.16136 -4.20647 0.18041 0.73971 0.84546 1.53259 2.46085 2.78190 3.07410 3.28166 3.32103 3.36200 3.55034 4.07027 4.09783 4.33935 4.37172 4.56868 4.70292 4.78596 5.03233 5.06508 5.14588 5.19623 5.27396 5.34992 5.38677 5.52671 5.56030 5.90014 6.03915 6.16805 6.33414 6.74418 6.80553 6.89353 7.09324 7.23136 7.29126 7.43021 7.80798 8.07484 8.81537 9.45184 10.92399 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.004062 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.029431 B = 6890.704789 C = 7666.567614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.176 4.176 3 C 0.144 3.856 4 N -0.971 5.971 5 C 0.256 3.744 6 C -0.531 4.531 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.274 1.274 14 S 2.686 3.314 15 O -0.933 6.933 16 O -0.964 6.964 17 C -0.688 4.688 18 C 0.173 3.827 19 N -0.454 5.454 20 C 0.186 3.814 21 Cl -0.012 7.012 22 C 0.078 3.922 23 O -0.298 6.298 24 C 0.015 3.985 25 C -0.048 4.048 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.184 0.816 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -12.341 -4.091 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.196 4.196 3 C 0.018 3.982 4 N -0.811 5.811 5 C 0.135 3.865 6 C -0.570 4.570 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.199 1.199 14 S 2.770 3.230 15 O -0.923 6.923 16 O -0.954 6.954 17 C -0.771 4.771 18 C 0.014 3.986 19 N -0.166 5.166 20 C 0.021 3.979 21 Cl 0.017 6.983 22 C 0.028 3.972 23 O -0.210 6.210 24 C -0.080 4.080 25 C -0.075 4.075 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.200 0.800 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.633 -12.778 -4.676 14.083 hybrid contribution -0.192 0.783 1.261 1.497 sum 3.440 -11.995 -3.415 12.938 Atomic orbital electron populations 1.23809 0.95785 1.01788 0.99965 1.23463 0.96770 0.98896 1.00428 1.20451 0.93299 0.95655 0.88796 1.57449 1.27005 1.77940 1.18673 1.19142 0.96399 0.95410 0.75552 1.21418 1.44065 0.91506 1.00040 0.91927 1.24905 0.94785 0.98737 0.95343 1.69897 1.43506 1.35827 1.04170 0.86576 0.78777 0.85036 0.77209 1.20089 1.21182 1.19915 1.02500 0.73923 0.72849 0.73698 1.93619 1.69130 1.71655 1.57851 1.93526 1.83923 1.84913 1.33036 1.32654 1.13343 1.30881 1.00227 1.22354 0.91354 0.86023 0.98827 1.67197 1.13005 1.16118 1.20268 1.21179 1.00294 0.87766 0.88664 1.98413 1.96013 1.07602 1.96308 1.19512 0.99330 0.91823 0.86562 1.86162 1.85325 1.35569 1.13931 1.23343 1.02309 0.93927 0.88395 1.21534 0.94569 0.93935 0.97474 0.88065 0.88893 0.88180 0.88483 0.89065 0.94158 0.94580 0.92555 0.79951 0.91750 0.87196 0.91344 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.01 0.42 -1.85 16 2 C -0.18 -2.46 9.84 -36.03 -0.35 -2.82 16 3 C 0.14 2.28 6.12 -5.19 -0.03 2.25 16 4 N -0.97 -18.33 2.75 -116.95 -0.32 -18.65 16 5 C 0.26 5.88 5.10 -5.19 -0.03 5.86 16 6 C -0.53 -13.83 9.38 -34.44 -0.32 -14.15 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -24.60 13.29 55.43 0.74 -23.86 16 10 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 S 2.69 48.82 5.66 -107.50 -0.61 48.22 16 15 O -0.93 -19.99 16.33 -57.17 -0.93 -20.92 16 16 O -0.96 -17.75 15.86 -57.17 -0.91 -18.66 16 17 C -0.69 -10.68 5.99 -39.46 -0.24 -10.91 16 18 C 0.17 2.47 10.06 -17.54 -0.18 2.30 16 19 N -0.45 -6.69 10.34 -10.25 -0.11 -6.80 16 20 C 0.19 2.69 7.29 -17.29 -0.13 2.56 16 21 Cl -0.01 -0.15 28.66 -51.86 -1.49 -1.64 16 22 C 0.08 1.10 6.70 -39.05 -0.26 0.84 16 23 O -0.30 -3.76 9.97 -19.53 -0.19 -3.95 16 24 C 0.01 0.15 9.83 101.05 0.99 1.14 16 25 C -0.05 -0.71 8.61 -39.14 -0.34 -1.05 16 26 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 27 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.10 1.32 7.43 -52.49 -0.39 0.93 16 29 H 0.10 1.57 7.76 -51.93 -0.40 1.16 16 30 H 0.09 1.31 6.91 -51.93 -0.36 0.96 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.53 16 32 H 0.04 0.86 7.61 -51.93 -0.40 0.47 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.18 2.20 7.62 -52.49 -0.40 1.80 16 35 H 0.06 0.59 7.71 -51.93 -0.40 0.19 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 38 H 0.17 2.38 6.10 -52.49 -0.32 2.06 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -30.92 359.51 -8.28 -39.20 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.29 Total: 0.16 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.56 Total: -14.20 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.31 Total: -49.31 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -2.04 Total: -43.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 48.82 SS G_CDS: -0.61 Total: 48.22 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.49 Total: -1.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.92 -8.28 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813722294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.837 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds