Wall clock time and date at job start Sat Apr 11 2020 07:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99796 * 2 1 4 4 N 1.46502 * 109.47089 * 125.00381 * 3 2 1 5 5 C 1.46500 * 119.99809 * 275.00098 * 4 3 2 6 6 C 1.50707 * 109.46891 * 274.99929 * 5 4 3 7 7 H 1.07994 * 120.00198 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99421 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00684 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99694 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46997 * 60.00065 * 10 8 6 12 12 H 1.48506 * 109.47227 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47357 * 300.00330 * 10 8 6 14 14 S 1.65596 * 120.00138 * 95.00250 * 4 3 2 15 15 O 1.42101 * 106.40411 * 156.46321 * 14 4 3 16 16 O 1.42095 * 106.40250 * 23.53886 * 14 4 3 17 17 C 1.76197 * 107.21602 * 269.99831 * 14 4 3 18 18 C 1.38203 * 120.37780 * 90.00028 * 17 14 4 19 19 N 1.31884 * 120.90235 * 180.02562 * 18 17 14 20 20 C 1.31910 * 121.76190 * 359.97260 * 19 18 17 21 21 Cl 1.73599 * 119.67522 * 179.97438 * 20 19 18 22 22 C 1.38865 * 120.65692 * 0.02562 * 20 19 18 23 23 O 1.35934 * 120.47962 * 179.97438 * 22 20 19 24 24 C 1.42903 * 117.00080 * 179.97438 * 23 22 20 25 25 C 1.38599 * 120.37799 * 270.28037 * 17 14 4 26 26 H 1.07991 * 120.00263 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99455 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00255 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47299 * 5.00258 * 3 2 1 30 30 H 1.08996 * 109.47551 * 245.00163 * 3 2 1 31 31 H 1.09002 * 109.47090 * 34.99758 * 5 4 3 32 32 H 1.08995 * 109.47383 * 155.00160 * 5 4 3 33 33 H 0.96995 * 120.00194 * 179.97438 * 9 8 6 34 34 H 1.07999 * 119.54486 * 0.02562 * 18 17 14 35 35 H 1.09002 * 109.47382 * 300.00508 * 24 23 22 36 36 H 1.09001 * 109.46938 * 180.02562 * 24 23 22 37 37 H 1.09004 * 109.46926 * 60.00616 * 24 23 22 38 38 H 1.07994 * 120.80385 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5991 3.2646 2.5450 7 1 2.9546 3.8414 1.7040 8 6 2.2089 3.9028 3.7031 9 7 1.7755 3.2005 4.7271 10 14 2.2971 5.7652 3.8184 11 1 1.4358 6.3673 2.7692 12 1 1.8253 6.2012 5.1573 13 1 3.7008 6.2075 3.6204 14 16 4.5713 0.8760 0.9172 15 8 5.3148 1.5046 1.9523 16 8 4.8567 1.0546 -0.4633 17 6 4.6595 -0.8569 1.2234 18 6 4.4760 -1.7590 0.1926 19 7 4.5394 -3.0582 0.4102 20 6 4.7790 -3.5504 1.6103 21 17 4.8500 -5.2702 1.8355 22 6 4.9740 -2.7064 2.6957 23 8 5.2202 -3.2175 3.9310 24 6 5.4101 -2.2818 4.9942 25 6 4.9080 -1.3310 2.5018 26 1 -0.5400 0.9352 0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4027 -0.9313 31 1 1.4983 1.4370 2.5982 32 1 3.1613 1.3204 3.2220 33 1 1.5014 3.6495 5.5420 34 1 4.2781 -1.3950 -0.8048 35 1 6.2624 -1.6415 4.7669 36 1 5.5981 -2.8204 5.9230 37 1 4.5148 -1.6697 5.1037 38 1 5.0512 -0.6487 3.3266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813722294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:26 Heat of formation + Delta-G solvation = -69.828890 kcal Electronic energy + Delta-G solvation = -26574.351477 eV Core-core repulsion = 22570.723338 eV Total energy + Delta-G solvation = -4003.628139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01239 -39.50201 -38.43271 -37.97123 -37.91775 -36.97762 -35.00047 -33.80311 -33.54996 -32.04792 -29.34570 -28.63592 -26.57561 -25.42239 -24.52389 -24.18932 -21.12364 -20.42942 -19.56652 -18.84163 -18.69209 -18.35479 -18.23821 -17.54698 -17.23289 -17.20872 -16.32772 -15.91067 -15.72726 -15.41624 -15.21689 -14.95701 -14.63872 -14.27015 -14.23496 -13.82940 -13.44197 -13.26261 -13.15895 -13.07372 -13.05893 -12.96998 -12.63351 -12.62329 -12.48399 -12.44573 -12.30213 -12.28759 -11.95932 -11.67864 -11.36232 -11.13755 -10.55994 -10.30062 -9.90806 -9.78316 -8.17610 -6.28278 -1.03182 -0.67454 -0.27902 0.44189 1.35434 1.44012 1.46286 1.53026 1.80861 1.87123 2.19667 2.43798 2.66926 2.93188 3.12258 3.15553 3.49382 3.57165 3.59985 3.91310 3.99471 4.15916 4.26142 4.31047 4.36738 4.40472 4.66197 4.80209 4.81868 4.96548 5.08001 5.22095 5.42219 5.66306 5.74238 5.74600 5.80370 5.98510 6.11801 6.16357 6.79428 7.40513 8.89823 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.004062 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.029431 B = 6890.704789 C = 7666.567614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.189 4.189 3 C 0.138 3.862 4 N -0.977 5.977 5 C 0.272 3.728 6 C -0.547 4.547 7 H 0.057 0.943 8 C 0.018 3.982 9 N -0.922 5.922 10 Si 0.950 3.050 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.276 1.276 14 S 2.700 3.300 15 O -0.972 6.972 16 O -0.968 6.968 17 C -0.689 4.689 18 C 0.176 3.824 19 N -0.458 5.458 20 C 0.180 3.820 21 Cl 0.006 6.994 22 C 0.080 3.920 23 O -0.300 6.300 24 C 0.006 3.994 25 C -0.056 4.056 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.267 0.733 34 H 0.205 0.795 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.062 0.938 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -13.220 -4.522 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.209 4.209 3 C 0.013 3.987 4 N -0.815 5.815 5 C 0.149 3.851 6 C -0.586 4.586 7 H 0.075 0.925 8 C -0.182 4.182 9 N -0.562 5.562 10 Si 0.776 3.224 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.202 1.202 14 S 2.788 3.212 15 O -0.962 6.962 16 O -0.959 6.959 17 C -0.776 4.776 18 C 0.018 3.982 19 N -0.170 5.170 20 C 0.015 3.985 21 Cl 0.034 6.966 22 C 0.029 3.971 23 O -0.212 6.212 24 C -0.088 4.088 25 C -0.084 4.084 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.221 0.779 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.421 -13.624 -5.133 14.956 hybrid contribution -0.118 0.926 1.406 1.687 sum 3.303 -12.698 -3.727 13.640 Atomic orbital electron populations 1.24022 0.95511 1.02811 0.97979 1.23376 0.97130 0.98214 1.02170 1.20633 0.93144 0.96714 0.88203 1.57302 1.27591 1.78652 1.17977 1.18685 0.95442 0.93774 0.77196 1.21781 1.43620 0.93272 0.99921 0.92453 1.25632 0.94645 1.02686 0.95200 1.69983 1.44352 1.37279 1.04573 0.85727 0.78614 0.80490 0.77618 1.19013 1.20549 1.20167 1.01732 0.73137 0.73399 0.72934 1.93569 1.70126 1.73503 1.59020 1.93510 1.83834 1.85578 1.32940 1.32156 1.15380 1.28941 1.01167 1.22684 0.90434 0.85787 0.99307 1.67290 1.13286 1.16019 1.20416 1.21446 0.99649 0.88713 0.88715 1.98418 1.95821 1.06075 1.96252 1.19507 0.98920 0.91304 0.87350 1.86171 1.84942 1.36313 1.13727 1.23632 1.02276 0.94261 0.88647 1.21622 0.94753 0.94610 0.97368 0.88017 0.86911 0.87211 0.89252 0.87677 0.95222 0.96022 0.92448 0.77869 0.91233 0.84164 0.91915 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 14.32 67.78 0.97 -3.02 16 2 C -0.19 -5.07 9.84 25.64 0.25 -4.81 16 3 C 0.14 4.31 6.12 85.63 0.52 4.83 16 4 N -0.98 -37.06 2.75 -523.91 -1.44 -38.50 16 5 C 0.27 12.73 5.10 85.64 0.44 13.17 16 6 C -0.55 -28.85 9.38 25.60 0.24 -28.61 16 7 H 0.06 3.01 7.81 -2.91 -0.02 2.98 16 8 C 0.02 0.98 5.46 84.66 0.46 1.44 16 9 N -0.92 -51.13 13.29 21.45 0.28 -50.85 16 10 Si 0.95 42.38 29.54 68.60 2.03 44.40 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 S 2.70 98.33 5.66 -56.49 -0.32 98.01 16 15 O -0.97 -42.57 16.33 -128.00 -2.09 -44.66 16 16 O -0.97 -35.08 15.86 -128.00 -2.03 -37.11 16 17 C -0.69 -20.99 5.99 22.35 0.13 -20.86 16 18 C 0.18 4.79 10.06 84.68 0.85 5.64 16 19 N -0.46 -12.71 10.34 -186.33 -1.93 -14.64 16 20 C 0.18 4.92 7.29 84.83 0.62 5.54 16 21 Cl 0.01 0.13 28.66 -2.72 -0.08 0.05 16 22 C 0.08 2.18 6.70 22.62 0.15 2.33 16 23 O -0.30 -7.14 9.97 -92.80 -0.92 -8.06 16 24 C 0.01 0.11 9.83 113.37 1.11 1.22 16 25 C -0.06 -1.65 8.61 22.55 0.19 -1.46 16 26 H 0.10 2.43 7.84 -2.92 -0.02 2.40 16 27 H 0.11 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.11 2.72 7.43 -2.91 -0.02 2.70 16 29 H 0.09 2.89 7.76 -2.39 -0.02 2.87 16 30 H 0.11 2.94 6.91 -2.39 -0.02 2.93 16 31 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 32 H 0.02 1.07 7.61 -2.39 -0.02 1.06 16 33 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.20 4.50 7.62 -2.91 -0.02 4.48 16 35 H 0.07 1.21 7.71 -2.39 -0.02 1.19 16 36 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.23 7.69 -2.38 -0.02 1.21 16 38 H 0.17 4.86 6.10 -2.91 -0.02 4.84 16 Total: -1.00 -64.89 359.51 0.54 -64.35 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.09 Total: 11.59 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 5.95 Total: -24.59 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -3.08 Total: -103.98 kcal Atomic # 8 Polarization: -84.78 SS G_CDS: -5.05 Total: -89.83 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 98.33 SS G_CDS: -0.32 Total: 98.01 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -0.08 Total: 0.05 kcal Total: -64.89 0.54 -64.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813722294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.484 kcal (2) G-P(sol) polarization free energy of solvation -64.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds