Wall clock time and date at job start Sat Apr 11 2020 07:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47371 * 300.00151 * 3 2 1 6 6 H 1.48500 * 109.46880 * 60.00306 * 3 2 1 7 7 C 1.38645 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00219 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.35764 * 116.99870 * 185.07006 * 9 7 2 11 11 C 1.38899 * 120.05676 * 354.39419 * 10 9 7 12 12 C 1.38067 * 119.94687 * 179.97438 * 11 10 9 13 13 C 1.38435 * 120.05594 * 359.97438 * 12 11 10 14 14 Cl 1.73591 * 119.94774 * 180.02562 * 13 12 11 15 15 C 1.38396 * 120.10855 * 359.78981 * 13 12 11 16 16 C 1.38112 * 120.05600 * 0.46226 * 15 13 12 17 17 C 1.50695 * 120.02708 * 179.79234 * 16 15 13 18 18 O 1.42898 * 109.47427 * 359.72167 * 17 16 15 19 19 N 1.41603 * 114.00326 * 179.97438 * 18 17 16 20 20 N 1.40223 * 126.62809 * 0.03070 * 19 18 17 21 21 N 1.28675 * 109.47421 * 179.97438 * 20 19 18 22 22 C 1.35230 * 110.06777 * 0.02562 * 21 20 19 23 23 C 1.40207 * 133.41958 * 179.97438 * 22 21 20 24 24 C 1.36950 * 118.31024 * 179.97438 * 23 22 21 25 25 C 1.38760 * 119.76532 * 0.02562 * 24 23 22 26 26 N 1.31568 * 121.35191 * 0.02562 * 25 24 23 27 27 C 1.32557 * 121.43147 * 359.73223 * 26 25 24 28 28 H 0.96999 * 119.99807 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.02706 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.97378 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.96925 * 180.23425 * 15 13 12 32 32 H 1.08994 * 109.47172 * 119.72732 * 17 16 15 33 33 H 1.09005 * 109.46973 * 239.72234 * 17 16 15 34 34 H 1.08004 * 120.84523 * 0.02562 * 23 22 21 35 35 H 1.08002 * 120.12227 * 180.02562 * 24 23 22 36 36 H 1.07999 * 119.32467 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3346 -2.3683 -0.0005 10 6 2.0700 -3.5046 0.1058 11 6 3.4574 -3.4393 0.0911 12 6 4.2030 -4.5963 0.2000 13 6 3.5690 -5.8206 0.3242 14 17 4.5092 -7.2734 0.4616 15 6 2.1868 -5.8878 0.3441 16 6 1.4364 -4.7339 0.2303 17 6 -0.0686 -4.8084 0.2472 18 8 -0.4767 -6.1711 0.3831 19 7 -1.8808 -6.3519 0.4104 20 7 -2.8556 -5.3481 0.3185 21 7 -4.0258 -5.8797 0.3781 22 6 -3.9198 -7.2215 0.5092 23 6 -4.8595 -8.2564 0.6173 24 6 -4.4000 -9.5407 0.7399 25 6 -3.0341 -9.7852 0.7547 26 7 -2.1622 -8.8051 0.6536 27 6 -2.5510 -7.5441 0.5280 28 1 -0.4850 0.8401 0.0004 29 1 3.9525 -2.4843 -0.0046 30 1 5.2817 -4.5460 0.1890 31 1 1.6946 -6.8438 0.4449 32 1 -0.4516 -4.2289 1.0872 33 1 -0.4630 -4.4021 -0.6842 34 1 -5.9188 -8.0463 0.6034 35 1 -5.0981 -10.3603 0.8247 36 1 -2.6796 -10.8006 0.8522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814265046.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:30 Heat of formation + Delta-G solvation = 139.147422 kcal Electronic energy + Delta-G solvation = -26208.753760 eV Core-core repulsion = 22111.036314 eV Total energy + Delta-G solvation = -4097.717446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.062 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.34078 -39.62267 -38.88514 -37.64359 -36.88654 -35.61802 -33.60608 -32.54838 -31.93935 -30.90506 -30.23915 -29.10271 -26.17991 -25.58255 -24.93345 -23.52831 -22.54337 -21.58943 -20.98663 -18.97098 -18.53971 -18.26816 -17.21937 -16.77950 -16.75981 -15.79758 -15.59338 -15.19307 -14.92317 -14.62686 -14.28669 -13.96408 -13.88109 -13.71067 -13.21602 -13.11167 -13.04972 -12.69420 -12.52322 -12.48245 -12.04167 -11.96688 -11.78317 -11.27100 -11.25118 -11.18412 -10.79899 -10.57004 -10.52366 -10.36341 -9.75998 -9.64179 -9.38310 -9.01840 -8.98076 -8.43900 -7.43686 -6.66806 -4.26593 0.10450 0.65724 0.87466 1.74861 1.90086 1.96657 2.70787 3.01271 3.02914 3.08952 3.18739 3.35910 3.78297 3.98318 4.06675 4.12973 4.18780 4.50886 4.71085 4.82043 4.92484 5.05602 5.07866 5.28861 5.44633 5.53147 5.58852 5.65483 5.68276 5.71365 5.95165 6.08496 6.22627 6.40878 6.50103 6.69529 6.85259 6.93891 7.07751 7.32978 7.40702 7.71168 7.74707 8.76825 9.36380 10.49186 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.008922 B = 0.003414 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.599984 B = 8199.650888 C =11316.647238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.398 4.398 8 H 0.097 0.903 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.218 4.218 12 C -0.053 4.053 13 C -0.124 4.124 14 Cl -0.100 7.100 15 C -0.046 4.046 16 C -0.160 4.160 17 C 0.099 3.901 18 O -0.097 6.097 19 N -0.244 5.244 20 N 0.025 4.975 21 N -0.201 5.201 22 C -0.059 4.059 23 C 0.016 3.984 24 C -0.193 4.193 25 C 0.177 3.823 26 N -0.475 5.475 27 C 0.291 3.709 28 H 0.274 0.726 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -15.880 1.322 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.473 4.473 8 H 0.115 0.885 9 O -0.064 6.064 10 C 0.111 3.889 11 C -0.238 4.238 12 C -0.072 4.072 13 C -0.151 4.151 14 Cl -0.072 7.072 15 C -0.065 4.065 16 C -0.163 4.163 17 C 0.023 3.977 18 O -0.088 6.088 19 N -0.082 5.082 20 N 0.037 4.963 21 N -0.082 5.082 22 C -0.187 4.187 23 C -0.014 4.014 24 C -0.217 4.217 25 C 0.003 3.997 26 N -0.188 5.188 27 C 0.049 3.951 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.398 -14.424 1.176 15.125 hybrid contribution 0.347 0.132 0.057 0.375 sum -4.052 -14.292 1.233 14.907 Atomic orbital electron populations 1.70036 1.06015 1.28238 1.43845 1.25361 0.95915 0.99039 0.95924 0.85597 0.79183 0.79908 0.78501 1.18902 1.19910 1.19898 1.21442 0.92032 0.80293 1.53534 0.88526 1.83966 1.34449 1.11536 1.76404 1.18871 0.90257 0.86920 0.92842 1.21043 0.92942 0.98901 1.10878 1.20709 0.99425 0.90341 0.96725 1.20227 0.91102 0.86700 1.17042 1.98286 1.73377 1.38245 1.97251 1.20327 0.91514 0.97387 0.97238 1.18146 0.91018 0.91672 1.15461 1.21614 0.92724 0.79101 1.04269 1.90725 0.92243 1.30011 1.95817 1.51897 0.97988 1.03609 1.54676 1.82177 0.89354 1.08959 1.15783 1.74897 1.13737 1.06178 1.13437 1.20220 0.92841 0.92477 1.13200 1.20656 0.99484 0.89578 0.91684 1.21784 0.97405 0.97338 1.05169 1.23000 0.88984 0.97398 0.90340 1.66725 1.39608 0.96761 1.15725 1.18807 0.88138 0.87410 1.00792 0.91563 0.84047 0.85973 0.85339 0.89201 0.89297 0.82872 0.82909 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.42 13.67 55.48 0.76 -22.66 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 19.32 29.55 -169.99 -5.02 14.29 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.40 -10.26 9.49 30.88 0.29 -9.96 16 8 H 0.10 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.16 -4.22 9.19 0.01 0.00 -4.22 16 10 C 0.17 3.74 6.62 -39.11 -0.26 3.48 16 11 C -0.22 -4.37 9.17 -39.40 -0.36 -4.73 16 12 C -0.05 -0.94 9.82 -39.57 -0.39 -1.33 16 13 C -0.12 -2.20 6.32 -39.45 -0.25 -2.45 16 14 Cl -0.10 -1.56 28.95 -51.86 -1.50 -3.06 16 15 C -0.05 -0.85 9.15 -39.57 -0.36 -1.21 16 16 C -0.16 -3.26 5.90 -104.44 -0.62 -3.87 16 17 C 0.10 1.95 5.60 36.00 0.20 2.15 16 18 O -0.10 -1.83 10.16 -11.47 -0.12 -1.94 16 19 N -0.24 -4.39 5.01 31.12 0.16 -4.24 16 20 N 0.02 0.46 12.97 60.35 0.78 1.24 16 21 N -0.20 -3.25 12.39 32.18 0.40 -2.85 16 22 C -0.06 -0.81 7.29 -84.72 -0.62 -1.43 16 23 C 0.02 0.14 10.18 -39.31 -0.40 -0.26 16 24 C -0.19 -1.22 10.03 -39.86 -0.40 -1.62 16 25 C 0.18 1.47 11.16 -17.47 -0.19 1.27 16 26 N -0.47 -6.45 10.40 -12.35 -0.13 -6.58 16 27 C 0.29 4.57 8.38 -155.98 -1.31 3.26 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.14 2.76 5.64 -52.48 -0.30 2.46 16 30 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.13 2.28 7.00 -52.49 -0.37 1.92 16 32 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 33 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.15 0.86 8.06 -52.48 -0.42 0.43 16 35 H 0.15 0.35 8.06 -52.49 -0.42 -0.08 16 36 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -30.75 342.87 -6.87 -37.62 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -2.61 Total: 2.90 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -4.76 Total: -15.66 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 1.97 Total: -35.10 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.12 Total: -6.17 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.50 Total: -3.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.75 -6.87 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814265046.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.770 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds