Wall clock time and date at job start Sat Apr 11 2020 07:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47371 * 300.00151 * 3 2 1 6 6 H 1.48500 * 109.46880 * 60.00306 * 3 2 1 7 7 C 1.38645 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00219 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.35764 * 116.99870 * 185.07006 * 9 7 2 11 11 C 1.38899 * 120.05676 * 354.39419 * 10 9 7 12 12 C 1.38067 * 119.94687 * 179.97438 * 11 10 9 13 13 C 1.38435 * 120.05594 * 359.97438 * 12 11 10 14 14 Cl 1.73591 * 119.94774 * 180.02562 * 13 12 11 15 15 C 1.38396 * 120.10855 * 359.78981 * 13 12 11 16 16 C 1.38112 * 120.05600 * 0.46226 * 15 13 12 17 17 C 1.50695 * 120.02708 * 179.79234 * 16 15 13 18 18 O 1.42898 * 109.47427 * 359.72167 * 17 16 15 19 19 N 1.41603 * 114.00326 * 179.97438 * 18 17 16 20 20 N 1.40223 * 126.62809 * 0.03070 * 19 18 17 21 21 N 1.28675 * 109.47421 * 179.97438 * 20 19 18 22 22 C 1.35230 * 110.06777 * 0.02562 * 21 20 19 23 23 C 1.40207 * 133.41958 * 179.97438 * 22 21 20 24 24 C 1.36950 * 118.31024 * 179.97438 * 23 22 21 25 25 C 1.38760 * 119.76532 * 0.02562 * 24 23 22 26 26 N 1.31568 * 121.35191 * 0.02562 * 25 24 23 27 27 C 1.32557 * 121.43147 * 359.73223 * 26 25 24 28 28 H 0.96999 * 119.99807 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.02706 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.97378 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.96925 * 180.23425 * 15 13 12 32 32 H 1.08994 * 109.47172 * 119.72732 * 17 16 15 33 33 H 1.09005 * 109.46973 * 239.72234 * 17 16 15 34 34 H 1.08004 * 120.84523 * 0.02562 * 23 22 21 35 35 H 1.08002 * 120.12227 * 180.02562 * 24 23 22 36 36 H 1.07999 * 119.32467 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3346 -2.3683 -0.0005 10 6 2.0700 -3.5046 0.1058 11 6 3.4574 -3.4393 0.0911 12 6 4.2030 -4.5963 0.2000 13 6 3.5690 -5.8206 0.3242 14 17 4.5092 -7.2734 0.4616 15 6 2.1868 -5.8878 0.3441 16 6 1.4364 -4.7339 0.2303 17 6 -0.0686 -4.8084 0.2472 18 8 -0.4767 -6.1711 0.3831 19 7 -1.8808 -6.3519 0.4104 20 7 -2.8556 -5.3481 0.3185 21 7 -4.0258 -5.8797 0.3781 22 6 -3.9198 -7.2215 0.5092 23 6 -4.8595 -8.2564 0.6173 24 6 -4.4000 -9.5407 0.7399 25 6 -3.0341 -9.7852 0.7547 26 7 -2.1622 -8.8051 0.6536 27 6 -2.5510 -7.5441 0.5280 28 1 -0.4850 0.8401 0.0004 29 1 3.9525 -2.4843 -0.0046 30 1 5.2817 -4.5460 0.1890 31 1 1.6946 -6.8438 0.4449 32 1 -0.4516 -4.2289 1.0872 33 1 -0.4630 -4.4021 -0.6842 34 1 -5.9188 -8.0463 0.6034 35 1 -5.0981 -10.3603 0.8247 36 1 -2.6796 -10.8006 0.8522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814265046.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:30 Heat of formation + Delta-G solvation = 119.677599 kcal Electronic energy + Delta-G solvation = -26209.598035 eV Core-core repulsion = 22111.036314 eV Total energy + Delta-G solvation = -4098.561721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.062 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.40324 -41.27560 -39.86377 -39.11396 -38.44564 -37.08882 -34.65916 -34.38157 -33.21715 -32.06892 -31.30420 -30.73286 -27.77585 -27.37579 -25.89941 -24.47379 -23.94629 -23.04946 -22.49766 -20.15952 -19.98226 -19.62332 -18.88295 -18.05333 -17.60862 -17.32821 -16.81590 -16.60810 -16.29736 -16.13626 -15.75561 -15.63330 -15.47801 -14.75396 -14.47236 -14.21868 -14.13784 -14.04148 -13.74178 -13.68999 -13.67980 -13.39350 -13.07526 -12.84434 -12.78633 -12.72229 -12.11803 -12.06399 -11.95999 -11.77111 -11.37569 -10.84336 -10.62138 -10.42839 -10.03256 -9.95768 -9.10421 -8.54098 -6.23290 -0.83620 -0.59412 0.04975 0.16597 0.29866 0.91036 1.22331 1.35732 1.42691 1.53665 2.04526 2.11764 2.51212 2.55387 2.87198 2.99393 3.05488 3.20327 3.25728 3.51121 3.80478 3.88131 3.91589 3.98287 4.05166 4.16819 4.33667 4.41542 4.53930 4.61302 4.81270 4.83785 4.96705 5.02814 5.09553 5.29086 5.35369 5.38101 5.55826 5.72653 5.89345 6.44013 6.66379 6.88997 7.57720 8.66946 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.008922 B = 0.003414 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.599984 B = 8199.650888 C =11316.647238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.015 4.015 3 Si 1.018 2.982 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.417 4.417 8 H 0.113 0.887 9 O -0.209 6.209 10 C 0.142 3.858 11 C -0.218 4.218 12 C -0.044 4.044 13 C -0.110 4.110 14 Cl -0.068 7.068 15 C -0.046 4.046 16 C -0.166 4.166 17 C 0.118 3.882 18 O -0.105 6.105 19 N -0.262 5.262 20 N -0.030 5.030 21 N -0.206 5.206 22 C -0.073 4.073 23 C 0.015 3.985 24 C -0.161 4.161 25 C 0.191 3.809 26 N -0.518 5.518 27 C 0.268 3.732 28 H 0.275 0.725 29 H 0.147 0.853 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.189 0.811 35 H 0.212 0.788 36 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -19.734 1.742 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.215 4.215 3 Si 0.837 3.163 4 H -0.169 1.169 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.493 4.493 8 H 0.130 0.870 9 O -0.114 6.114 10 C 0.089 3.911 11 C -0.238 4.238 12 C -0.062 4.062 13 C -0.137 4.137 14 Cl -0.040 7.040 15 C -0.064 4.064 16 C -0.169 4.169 17 C 0.042 3.958 18 O -0.096 6.096 19 N -0.101 5.101 20 N -0.016 5.016 21 N -0.087 5.087 22 C -0.203 4.203 23 C -0.015 4.015 24 C -0.184 4.184 25 C 0.019 3.981 26 N -0.234 5.234 27 C 0.027 3.973 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.206 0.794 35 H 0.229 0.771 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.660 -18.332 1.598 18.762 hybrid contribution 0.088 0.648 -0.019 0.654 sum -3.573 -17.685 1.579 18.111 Atomic orbital electron populations 1.70190 1.08088 1.29103 1.47183 1.26600 0.96762 1.02763 0.95336 0.84531 0.78589 0.74739 0.78423 1.16872 1.19558 1.19599 1.21964 0.92910 0.80723 1.53654 0.87018 1.83969 1.35764 1.12449 1.79217 1.19345 0.91560 0.86672 0.93541 1.21213 0.91995 1.00230 1.10315 1.21038 1.01090 0.89157 0.94946 1.20441 0.91028 0.88146 1.14099 1.98306 1.72350 1.36322 1.96980 1.20454 0.92115 0.97010 0.96869 1.18346 0.91455 0.91918 1.15208 1.21171 0.92633 0.79655 1.02340 1.90620 0.94304 1.28731 1.95901 1.52010 0.96887 1.04858 1.56368 1.82162 0.90059 1.09827 1.19551 1.74774 1.13191 1.07964 1.12781 1.20866 0.93310 0.92215 1.13869 1.21286 1.00360 0.89049 0.90814 1.22439 0.97360 0.97690 1.00897 1.24053 0.89752 0.97960 0.86360 1.66807 1.41710 0.96475 1.18377 1.19276 0.88558 0.87902 1.01576 0.91608 0.83564 0.82265 0.84397 0.91329 0.91219 0.79409 0.77105 0.76201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.89 13.67 21.61 0.30 -53.59 16 2 C -0.02 -0.82 5.49 84.83 0.47 -0.35 16 3 Si 1.02 40.83 29.55 68.60 2.03 42.86 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.42 -22.65 9.49 67.92 0.64 -22.01 16 8 H 0.11 5.42 5.20 -2.91 -0.02 5.40 16 9 O -0.21 -11.76 9.19 -22.87 -0.21 -11.97 16 10 C 0.14 6.68 6.62 22.58 0.15 6.83 16 11 C -0.22 -8.74 9.17 22.39 0.21 -8.53 16 12 C -0.04 -1.45 9.82 22.28 0.22 -1.24 16 13 C -0.11 -3.71 6.32 22.35 0.14 -3.56 16 14 Cl -0.07 -1.92 28.95 -2.72 -0.08 -1.99 16 15 C -0.05 -1.70 9.15 22.28 0.20 -1.50 16 16 C -0.17 -7.16 5.90 -19.75 -0.12 -7.28 16 17 C 0.12 5.18 5.60 71.23 0.40 5.58 16 18 O -0.10 -4.25 10.16 -38.79 -0.39 -4.64 16 19 N -0.26 -10.23 5.01 -55.46 -0.28 -10.51 16 20 N -0.03 -1.21 12.97 37.02 0.48 -0.73 16 21 N -0.21 -7.13 12.39 -52.10 -0.65 -7.77 16 22 C -0.07 -2.01 7.29 39.69 0.29 -1.72 16 23 C 0.01 0.20 10.18 22.45 0.23 0.43 16 24 C -0.16 -1.15 10.03 22.09 0.22 -0.93 16 25 C 0.19 2.36 11.16 84.86 0.95 3.31 16 26 N -0.52 -13.46 10.40 -192.98 -2.01 -15.47 16 27 C 0.27 8.63 8.38 133.97 1.12 9.75 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.15 5.67 5.64 -2.91 -0.02 5.65 16 30 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.14 4.89 7.00 -2.91 -0.02 4.87 16 32 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.07 3.25 8.14 -2.38 -0.02 3.23 16 34 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.21 -0.81 8.06 -2.91 -0.02 -0.83 16 36 H 0.22 0.55 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -76.79 342.87 5.48 -71.32 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.17 Total: 13.71 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 5.12 Total: -21.21 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -2.15 Total: -88.07 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.60 Total: -16.62 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -1.99 kcal Total: -76.79 5.48 -71.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814265046.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.993 kcal (2) G-P(sol) polarization free energy of solvation -76.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds