Wall clock time and date at job start Sat Apr 11 2020 07:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34779 * 117.00144 * 2 1 4 4 O 1.21499 * 120.00404 * 0.02562 * 3 2 1 5 5 C 1.47372 * 119.99814 * 179.97438 * 3 2 1 6 6 C 1.36754 * 126.83966 * 180.28040 * 5 3 2 7 7 C 1.42133 * 103.78853 * 180.11948 * 6 5 3 8 8 C 1.48318 * 126.84069 * 179.89009 * 7 6 5 9 9 O 1.21494 * 119.99870 * 359.70771 * 8 7 6 10 10 N 1.34778 * 119.99912 * 179.70553 * 8 7 6 11 11 C 1.46502 * 120.00014 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46978 * 179.97438 * 11 10 8 13 13 C 1.38318 * 119.96867 * 269.72591 * 12 11 10 14 14 C 1.38289 * 120.13656 * 179.76822 * 13 12 11 15 15 C 1.38121 * 120.06635 * 0.51200 * 14 13 12 16 16 C 1.38848 * 119.93356 * 359.74488 * 15 14 13 17 17 O 1.35757 * 120.07062 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99900 * 354.48945 * 17 16 15 19 19 H 1.08007 * 119.99883 * 5.05637 * 18 17 16 20 20 C 1.38655 * 119.99933 * 185.05845 * 18 17 16 21 21 N 1.31553 * 120.00201 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47608 * 59.99847 * 22 20 18 24 24 H 1.48502 * 109.46804 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47176 * 299.99619 * 22 20 18 26 26 C 1.38080 * 119.96149 * 90.00546 * 12 11 10 27 27 N 1.30967 * 106.31722 * 359.62840 * 7 6 5 28 28 O 1.20862 * 111.83059 * 0.24045 * 27 7 6 29 29 H 1.08993 * 109.47026 * 300.00356 * 1 2 3 30 30 H 1.09005 * 109.46459 * 60.00050 * 1 2 3 31 31 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08003 * 128.10824 * 359.97438 * 6 5 3 33 33 H 0.96998 * 120.00309 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.46647 * 60.00669 * 11 10 8 35 35 H 1.08994 * 109.47316 * 300.00691 * 11 10 8 36 36 H 1.07999 * 119.93168 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.96307 * 180.25437 * 14 13 12 38 38 H 1.07998 * 120.03181 * 179.71958 * 15 14 13 39 39 H 0.96993 * 120.00169 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.03787 * 359.95607 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4023 2.2199 0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2972 2.4137 0.0060 7 6 5.6324 1.9264 0.0010 8 6 6.8748 2.7365 0.0015 9 8 6.8090 3.9496 0.0012 10 7 8.0768 2.1268 0.0023 11 6 9.3040 2.9269 0.0023 12 6 10.5008 2.0111 0.0039 13 6 11.0522 1.5970 1.2029 14 6 12.1475 0.7527 1.2085 15 6 12.7006 0.3289 0.0160 16 6 12.1526 0.7471 -1.1893 17 8 12.6944 0.3326 -2.3630 18 6 13.8303 -0.3901 -2.2915 19 1 14.2236 -0.6842 -1.3295 20 6 14.4936 -0.7558 -3.4528 21 7 14.0144 -0.3980 -4.6246 22 14 16.0671 -1.7577 -3.3536 23 1 15.7893 -3.0501 -2.6771 24 1 16.5769 -2.0155 -4.7244 25 1 17.0864 -1.0034 -2.5807 26 6 11.0492 1.5908 -1.1916 27 7 5.5471 0.6195 0.0017 28 8 4.3982 0.2441 0.0014 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9626 3.4406 0.0104 33 1 8.1294 1.1582 0.0023 34 1 9.3274 3.5563 0.8919 35 1 9.3280 3.5553 -0.8880 36 1 10.6240 1.9303 2.1367 37 1 12.5733 0.4278 2.1464 38 1 13.5588 -0.3268 0.0210 39 1 14.4782 -0.6541 -5.4370 40 1 10.6205 1.9176 -2.1275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435131451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:07 Heat of formation + Delta-G solvation = -47.142764 kcal Electronic energy + Delta-G solvation = -27821.130561 eV Core-core repulsion = 23378.166144 eV Total energy + Delta-G solvation = -4442.964416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.109 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -45.68987 -40.92132 -39.92647 -39.06855 -37.22694 -36.89628 -34.79406 -34.54212 -32.88637 -32.36687 -30.89053 -29.22090 -28.53594 -26.71322 -25.42372 -24.97508 -24.23848 -22.70538 -21.77262 -20.91986 -20.65990 -19.46512 -18.51644 -17.87296 -17.74183 -17.32281 -17.05956 -16.86046 -16.26486 -15.94739 -15.55428 -15.11042 -14.65126 -14.54686 -14.44021 -14.19099 -14.02138 -13.91922 -13.66391 -13.55862 -12.89373 -12.82298 -12.52315 -12.30834 -12.29885 -11.72344 -11.50182 -11.45054 -11.44056 -11.03140 -11.00149 -10.88599 -10.77113 -10.58091 -10.49523 -10.46653 -9.45881 -9.25905 -8.91981 -8.31931 -7.37959 -6.51936 -4.11682 0.00187 0.84162 1.55359 1.78357 2.02628 2.21274 2.41560 2.82556 2.87217 3.08891 3.10070 3.12957 3.45578 3.90115 4.07001 4.25648 4.36115 4.46150 4.55444 4.65834 4.71678 4.86000 5.00832 5.02685 5.17296 5.20585 5.46381 5.53248 5.64179 5.73891 5.81314 6.01794 6.15914 6.20138 6.49127 6.75805 6.82884 6.94167 7.11009 7.14679 7.22916 7.31101 7.40378 7.65395 7.83146 7.91722 8.93073 9.60836 10.65581 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.001826 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.539588 B =15327.626887 C =16197.019809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.562 3.438 4 O -0.473 6.473 5 C -0.078 4.078 6 C -0.081 4.081 7 C -0.030 4.030 8 C 0.597 3.403 9 O -0.520 6.520 10 N -0.700 5.700 11 C 0.167 3.833 12 C -0.078 4.078 13 C -0.194 4.194 14 C -0.076 4.076 15 C -0.223 4.223 16 C 0.150 3.850 17 O -0.175 6.175 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.169 4.169 27 N -0.296 5.296 28 O 0.164 5.836 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.199 0.801 33 H 0.411 0.589 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.272 0.728 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.943 0.816 10.706 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C 0.403 3.597 4 O -0.359 6.359 5 C -0.141 4.141 6 C -0.103 4.103 7 C -0.187 4.187 8 C 0.379 3.621 9 O -0.395 6.395 10 N -0.351 5.351 11 C 0.046 3.954 12 C -0.078 4.078 13 C -0.213 4.213 14 C -0.094 4.094 15 C -0.243 4.243 16 C 0.096 3.904 17 O -0.078 6.078 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.189 4.189 27 N 0.011 4.989 28 O 0.076 5.924 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.128 0.872 32 H 0.216 0.784 33 H 0.247 0.753 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.204 1.108 10.195 23.554 hybrid contribution 0.349 -0.363 0.066 0.508 sum -20.855 0.745 10.262 23.255 Atomic orbital electron populations 1.23469 0.74404 1.04671 1.03189 1.86634 1.24622 1.30910 1.83559 1.18947 0.84654 0.82570 0.73556 1.90974 1.64003 1.35951 1.45010 1.22710 0.90600 0.87741 1.13091 1.22911 0.89300 1.01025 0.97050 1.23616 0.96722 0.89968 1.08443 1.16717 0.81332 0.86336 0.77699 1.90832 1.86343 1.12332 1.50007 1.46035 1.04801 1.11568 1.72692 1.20297 0.79848 0.92134 1.03158 1.19194 0.96261 0.99106 0.93261 1.20477 1.00232 1.04395 0.96232 1.20752 0.95308 0.96338 0.96984 1.21254 1.04324 1.06647 0.92068 1.19312 0.92481 0.91924 0.86703 1.83982 1.37685 1.61438 1.24692 1.21282 0.99661 1.31360 0.94739 0.89049 1.25304 0.99228 0.97740 0.94170 1.70021 1.38985 1.42910 0.97527 0.85772 0.80086 0.79545 0.77987 1.19453 1.20220 1.19447 1.20087 0.98766 1.02599 0.97432 1.74178 0.98490 1.14272 1.11997 1.85074 1.10088 1.32590 1.64646 0.91205 0.91180 0.87175 0.78387 0.75327 0.90236 0.90136 0.87435 0.87180 0.85381 0.91848 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.14 10.57 101.05 1.07 1.21 16 2 O -0.34 -2.48 10.58 -41.50 -0.44 -2.92 16 3 C 0.56 4.84 7.96 34.45 0.27 5.12 16 4 O -0.47 -4.87 16.70 -19.26 -0.32 -5.19 16 5 C -0.08 -0.71 7.36 -36.40 -0.27 -0.98 16 6 C -0.08 -0.78 10.77 -38.63 -0.42 -1.20 16 7 C -0.03 -0.35 7.18 -82.60 -0.59 -0.94 16 8 C 0.60 8.05 7.85 -12.11 -0.10 7.95 16 9 O -0.52 -8.20 16.95 5.37 0.09 -8.11 16 10 N -0.70 -9.26 5.55 -62.28 -0.35 -9.61 16 11 C 0.17 2.34 5.80 -5.19 -0.03 2.31 16 12 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 13 C -0.19 -3.10 9.70 -39.53 -0.38 -3.48 16 14 C -0.08 -1.30 10.04 -39.61 -0.40 -1.69 16 15 C -0.22 -4.60 9.17 -39.40 -0.36 -4.96 16 16 C 0.15 3.46 6.65 -39.11 -0.26 3.20 16 17 O -0.17 -4.84 9.76 0.04 0.00 -4.84 16 18 C -0.39 -10.72 9.49 30.89 0.29 -10.42 16 19 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 22 Si 0.94 20.05 29.55 -169.99 -5.02 15.02 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.17 -3.36 9.65 -39.39 -0.38 -3.74 16 27 N -0.30 -3.38 11.80 33.36 0.39 -2.99 16 28 O 0.16 1.64 11.21 15.56 0.17 1.81 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.20 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.41 5.26 8.22 -40.82 -0.34 4.92 16 34 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 38 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -32.08 370.18 -5.17 -37.25 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.84 Total: 6.45 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.19 Total: -8.46 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.81 Total: -36.60 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.49 Total: -19.24 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.08 -5.17 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435131451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.893 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds