Wall clock time and date at job start Sat Apr 11 2020 07:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34779 * 117.00144 * 2 1 4 4 O 1.21499 * 120.00404 * 0.02562 * 3 2 1 5 5 C 1.47372 * 119.99814 * 179.97438 * 3 2 1 6 6 C 1.36754 * 126.83966 * 180.28040 * 5 3 2 7 7 C 1.42133 * 103.78853 * 180.11948 * 6 5 3 8 8 C 1.48318 * 126.84069 * 179.89009 * 7 6 5 9 9 O 1.21494 * 119.99870 * 359.70771 * 8 7 6 10 10 N 1.34778 * 119.99912 * 179.70553 * 8 7 6 11 11 C 1.46502 * 120.00014 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46978 * 179.97438 * 11 10 8 13 13 C 1.38318 * 119.96867 * 269.72591 * 12 11 10 14 14 C 1.38289 * 120.13656 * 179.76822 * 13 12 11 15 15 C 1.38121 * 120.06635 * 0.51200 * 14 13 12 16 16 C 1.38848 * 119.93356 * 359.74488 * 15 14 13 17 17 O 1.35757 * 120.07062 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99900 * 354.48945 * 17 16 15 19 19 H 1.08007 * 119.99883 * 5.05637 * 18 17 16 20 20 C 1.38655 * 119.99933 * 185.05845 * 18 17 16 21 21 N 1.31553 * 120.00201 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47608 * 59.99847 * 22 20 18 24 24 H 1.48502 * 109.46804 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47176 * 299.99619 * 22 20 18 26 26 C 1.38080 * 119.96149 * 90.00546 * 12 11 10 27 27 N 1.30967 * 106.31722 * 359.62840 * 7 6 5 28 28 O 1.20862 * 111.83059 * 0.24045 * 27 7 6 29 29 H 1.08993 * 109.47026 * 300.00356 * 1 2 3 30 30 H 1.09005 * 109.46459 * 60.00050 * 1 2 3 31 31 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08003 * 128.10824 * 359.97438 * 6 5 3 33 33 H 0.96998 * 120.00309 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.46647 * 60.00669 * 11 10 8 35 35 H 1.08994 * 109.47316 * 300.00691 * 11 10 8 36 36 H 1.07999 * 119.93168 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.96307 * 180.25437 * 14 13 12 38 38 H 1.07998 * 120.03181 * 179.71958 * 15 14 13 39 39 H 0.96993 * 120.00169 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.03787 * 359.95607 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4023 2.2199 0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2972 2.4137 0.0060 7 6 5.6324 1.9264 0.0010 8 6 6.8748 2.7365 0.0015 9 8 6.8090 3.9496 0.0012 10 7 8.0768 2.1268 0.0023 11 6 9.3040 2.9269 0.0023 12 6 10.5008 2.0111 0.0039 13 6 11.0522 1.5970 1.2029 14 6 12.1475 0.7527 1.2085 15 6 12.7006 0.3289 0.0160 16 6 12.1526 0.7471 -1.1893 17 8 12.6944 0.3326 -2.3630 18 6 13.8303 -0.3901 -2.2915 19 1 14.2236 -0.6842 -1.3295 20 6 14.4936 -0.7558 -3.4528 21 7 14.0144 -0.3980 -4.6246 22 14 16.0671 -1.7577 -3.3536 23 1 15.7893 -3.0501 -2.6771 24 1 16.5769 -2.0155 -4.7244 25 1 17.0864 -1.0034 -2.5807 26 6 11.0492 1.5908 -1.1916 27 7 5.5471 0.6195 0.0017 28 8 4.3982 0.2441 0.0014 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9626 3.4406 0.0104 33 1 8.1294 1.1582 0.0023 34 1 9.3274 3.5563 0.8919 35 1 9.3280 3.5553 -0.8880 36 1 10.6240 1.9303 2.1367 37 1 12.5733 0.4278 2.1464 38 1 13.5588 -0.3268 0.0210 39 1 14.4782 -0.6541 -5.4370 40 1 10.6205 1.9176 -2.1275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435131451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:05 Heat of formation + Delta-G solvation = -68.681852 kcal Electronic energy + Delta-G solvation = -27822.064566 eV Core-core repulsion = 23378.166144 eV Total energy + Delta-G solvation = -4443.898421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.109 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -46.53766 -41.55976 -41.16154 -40.60044 -38.51718 -37.84641 -36.02910 -35.41880 -34.30385 -33.70819 -32.26434 -30.81318 -28.96919 -28.00041 -27.22480 -25.80476 -25.19576 -23.59082 -23.28068 -22.45906 -21.55083 -20.37712 -19.52517 -19.35082 -18.86511 -18.36199 -18.17536 -17.45726 -17.31340 -16.94577 -16.87110 -16.63585 -16.12849 -16.07019 -15.56337 -15.35826 -15.09921 -14.93197 -14.78788 -14.43905 -14.38066 -14.00142 -13.77083 -13.44308 -13.41882 -13.04356 -12.95442 -12.56162 -12.42204 -12.30108 -12.19198 -12.15729 -11.93238 -11.90703 -11.72738 -11.25393 -11.23353 -10.81355 -10.38023 -9.80822 -9.06024 -8.47838 -6.16616 -0.75522 -0.05911 0.31776 0.68062 0.89454 1.32779 1.35189 1.44993 1.51279 1.58358 1.80781 1.94592 2.16885 2.52107 2.82942 3.12630 3.28706 3.35633 3.50326 3.63871 3.74484 3.88346 4.06536 4.27038 4.27412 4.37008 4.38074 4.46266 4.49147 4.59990 4.70414 4.76800 4.98186 4.99064 5.04203 5.10421 5.22829 5.58969 5.66981 5.68991 5.99813 6.06561 6.14682 6.22859 6.54769 6.76342 6.96691 7.76376 8.74904 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.001826 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.539588 B =15327.626887 C =16197.019809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.569 3.431 4 O -0.491 6.491 5 C -0.069 4.069 6 C -0.078 4.078 7 C -0.043 4.043 8 C 0.601 3.399 9 O -0.544 6.544 10 N -0.698 5.698 11 C 0.172 3.828 12 C -0.064 4.064 13 C -0.167 4.167 14 C -0.070 4.070 15 C -0.233 4.233 16 C 0.111 3.889 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.018 2.982 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.180 4.180 27 N -0.307 5.307 28 O 0.174 5.826 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.212 0.788 33 H 0.414 0.586 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.111 0.559 13.775 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.411 3.589 4 O -0.379 6.379 5 C -0.133 4.133 6 C -0.100 4.100 7 C -0.199 4.199 8 C 0.385 3.615 9 O -0.421 6.421 10 N -0.349 5.349 11 C 0.050 3.950 12 C -0.065 4.065 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.252 4.252 16 C 0.060 3.940 17 O -0.138 6.138 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.200 4.200 27 N 0.002 4.998 28 O 0.083 5.917 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.229 0.771 33 H 0.250 0.750 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.394 0.850 13.325 26.072 hybrid contribution 0.396 -0.182 -0.620 0.757 sum -21.998 0.668 12.705 25.412 Atomic orbital electron populations 1.23818 0.72449 1.06669 1.03604 1.86633 1.26515 1.29955 1.82969 1.18811 0.84250 0.82775 0.73102 1.90971 1.64224 1.36633 1.46041 1.22802 0.90890 0.87241 1.12340 1.23062 0.88465 1.01841 0.96638 1.23409 0.96632 0.90091 1.09794 1.16819 0.81681 0.86114 0.76891 1.90820 1.86736 1.13357 1.51148 1.45942 1.04634 1.11626 1.72660 1.20248 0.79034 0.91588 1.04088 1.19415 0.96531 0.98268 0.92252 1.21028 0.98492 1.01623 0.97447 1.21180 0.95082 0.95483 0.97058 1.21394 1.04413 1.06794 0.92600 1.19868 0.93816 0.93550 0.86735 1.83948 1.38907 1.63828 1.27153 1.21789 1.00066 1.31539 0.95580 0.87880 1.26593 1.02977 0.99001 0.93514 1.70175 1.41344 1.45894 0.98421 0.84655 0.75285 0.78087 0.78259 1.18058 1.19834 1.18132 1.20246 0.98397 1.02645 0.98710 1.74173 0.99168 1.14237 1.12235 1.85059 1.09818 1.32720 1.64085 0.90710 0.90900 0.84451 0.77088 0.75005 0.88092 0.90587 0.83198 0.83252 0.86086 0.91865 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.57 113.37 1.20 1.35 16 2 O -0.35 -4.39 10.58 -56.14 -0.59 -4.98 16 3 C 0.57 8.95 7.96 70.23 0.56 9.51 16 4 O -0.49 -9.43 16.70 19.84 0.33 -9.10 16 5 C -0.07 -1.16 7.36 24.33 0.18 -0.98 16 6 C -0.08 -1.40 10.77 22.89 0.25 -1.16 16 7 C -0.04 -0.93 7.18 42.92 0.31 -0.63 16 8 C 0.60 15.37 7.85 86.93 0.68 16.05 16 9 O -0.54 -16.40 16.95 -3.70 -0.06 -16.46 16 10 N -0.70 -17.23 5.55 -469.25 -2.60 -19.83 16 11 C 0.17 4.43 5.80 85.63 0.50 4.93 16 12 C -0.06 -1.98 5.25 -19.88 -0.10 -2.08 16 13 C -0.17 -4.63 9.70 22.30 0.22 -4.41 16 14 C -0.07 -2.17 10.04 22.25 0.22 -1.95 16 15 C -0.23 -9.50 9.17 22.39 0.21 -9.30 16 16 C 0.11 5.29 6.65 22.58 0.15 5.44 16 17 O -0.23 -13.66 9.76 -22.78 -0.22 -13.88 16 18 C -0.41 -23.60 9.49 67.92 0.64 -22.95 16 19 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 21 N -0.92 -56.10 13.67 21.61 0.30 -55.81 16 22 Si 1.02 42.15 29.55 68.60 2.03 44.18 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 26 C -0.18 -7.29 9.65 22.39 0.22 -7.08 16 27 N -0.31 -6.61 11.80 -48.97 -0.58 -7.19 16 28 O 0.17 3.21 11.21 65.88 0.74 3.95 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.41 9.90 8.22 -92.71 -0.76 9.14 16 34 H 0.10 2.24 8.08 -2.38 -0.02 2.22 16 35 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -74.22 370.18 5.39 -68.83 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.37 Total: 24.37 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 5.69 Total: -14.08 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.88 Total: -82.83 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: 0.19 Total: -40.48 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -74.22 5.39 -68.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435131451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.151 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds