Wall clock time and date at job start Sat Apr 11 2020 07:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47290 * 264.73038 * 3 2 1 5 5 H 1.48497 * 109.47153 * 24.73647 * 3 2 1 6 6 H 1.48505 * 109.46855 * 144.73281 * 3 2 1 7 7 C 1.37882 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99953 * 4.99261 * 7 2 1 9 9 C 1.50701 * 119.99822 * 185.00344 * 7 2 1 10 10 H 1.08991 * 109.47523 * 25.11963 * 9 7 2 11 11 N 1.46503 * 109.46762 * 265.12057 * 9 7 2 12 12 C 1.34773 * 120.00173 * 155.00000 * 11 9 7 13 13 O 1.21281 * 119.99783 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00313 * 180.02562 * 12 11 9 15 15 H 1.08999 * 110.85287 * 303.78616 * 14 12 11 16 16 C 1.54626 * 110.97145 * 67.62159 * 14 12 11 17 17 C 1.51288 * 104.25672 * 142.69940 * 16 14 12 18 18 O 1.21303 * 124.94453 * 164.00627 * 17 16 14 19 19 N 1.34417 * 110.11372 * 344.14809 * 17 16 14 20 20 C 1.40764 * 124.34993 * 179.43837 * 19 17 16 21 21 C 1.40252 * 126.08193 * 179.73877 * 20 19 17 22 22 N 1.30823 * 108.33504 * 179.68193 * 21 20 19 23 23 N 1.40072 * 108.37038 * 0.44009 * 22 21 20 24 24 H 0.97000 * 126.05560 * 179.81910 * 23 22 21 25 25 C 1.35754 * 126.07695 * 359.69638 * 20 19 17 26 26 C 1.46767 * 111.29912 * 359.16918 * 19 17 16 27 27 C 1.53000 * 109.47153 * 145.12530 * 9 7 2 28 28 F 1.39901 * 109.47153 * 185.03109 * 27 9 7 29 29 F 1.39897 * 109.46748 * 305.03066 * 27 9 7 30 30 F 1.39904 * 109.47158 * 65.03165 * 27 9 7 31 31 H 0.96996 * 119.99890 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99977 * 335.00572 * 11 9 7 33 33 H 1.09000 * 110.48378 * 261.59578 * 16 14 12 34 34 H 1.08996 * 110.48536 * 24.10669 * 16 14 12 35 35 H 1.08004 * 125.83029 * 359.94759 * 21 20 19 36 36 H 1.07999 * 126.22328 * 0.05736 * 25 20 19 37 37 H 1.09004 * 110.24571 * 136.28774 * 26 19 17 38 38 H 1.09004 * 110.24100 * 258.28303 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6080 1.9822 -1.3941 5 1 1.3954 2.6822 0.5858 6 1 3.4866 1.4749 0.8084 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1276 -0.0823 9 6 3.5073 -1.1965 0.1133 10 1 3.8351 -0.2869 0.6163 11 7 4.0983 -1.2541 -1.2260 12 6 5.3404 -0.7748 -1.4356 13 8 5.9690 -0.2964 -0.5154 14 6 5.9481 -0.8335 -2.8134 15 1 5.9574 -1.8562 -3.1902 16 6 5.2038 0.1092 -3.7872 17 6 6.2971 0.6756 -4.6662 18 8 6.1155 1.2384 -5.7253 19 7 7.4993 0.4619 -4.1042 20 6 8.7242 0.8566 -4.6745 21 6 9.9964 0.6572 -4.1189 22 7 10.8864 1.1522 -4.9401 23 7 10.2154 1.6941 -6.0438 24 1 10.6286 2.1290 -6.8061 25 6 8.8841 1.4974 -5.8606 26 6 7.3703 -0.2304 -2.8165 27 6 3.9556 -2.4160 0.9213 28 9 5.3384 -2.3578 1.1250 29 9 3.3019 -2.4217 2.1582 30 9 3.6363 -3.5834 0.2196 31 1 -0.4850 0.8400 0.0004 32 1 3.5956 -1.6370 -1.9619 33 1 4.4827 -0.4502 -4.3832 34 1 4.7056 0.9084 -3.2384 35 1 10.2059 0.1735 -3.1762 36 1 8.0960 1.7967 -6.5356 37 1 8.1158 -1.0217 -2.7372 38 1 7.4817 0.4774 -1.9950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455987738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:26 Heat of formation + Delta-G solvation = -144.949475 kcal Electronic energy + Delta-G solvation = -30971.379651 eV Core-core repulsion = 26014.610028 eV Total energy + Delta-G solvation = -4956.769623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.12780 -46.65749 -46.60183 -41.72540 -40.48409 -38.97586 -36.47093 -34.94670 -33.34019 -32.60521 -31.54211 -29.63562 -28.45118 -27.87625 -25.05044 -23.82805 -22.89916 -21.54156 -21.10081 -19.92665 -19.53327 -18.39968 -18.24152 -17.60383 -17.31415 -17.00004 -16.59245 -16.48932 -15.62469 -15.38641 -15.28816 -14.81828 -14.67789 -14.47971 -13.98893 -13.89498 -13.60721 -13.54237 -13.40974 -13.21108 -13.08550 -12.94437 -12.90042 -12.82022 -12.74245 -12.60418 -12.03391 -11.61158 -11.53535 -11.25616 -11.16913 -10.84823 -10.52676 -10.19148 -10.14170 -9.92690 -9.86674 -9.59554 -9.06826 -8.59112 -7.91950 -6.61752 -4.77801 1.53829 2.05620 2.32383 2.80651 2.89057 2.92515 3.01398 3.12667 3.16571 3.43139 3.82013 3.99258 4.07880 4.19539 4.61247 4.63029 4.68732 4.79496 4.84190 5.04821 5.11172 5.22076 5.24801 5.27150 5.37405 5.45042 5.50319 5.65387 5.79338 5.86567 6.22354 6.57633 6.79221 6.80836 6.95158 6.96264 7.33154 7.73558 7.93883 8.10932 8.43282 8.58640 8.92728 10.46541 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.003349 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.711043 B = 8357.588316 C = 9381.672892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.100 3.900 3 Si 0.869 3.131 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.536 4.536 8 H 0.094 0.906 9 C 0.192 3.808 10 H 0.100 0.900 11 N -0.708 5.708 12 C 0.509 3.491 13 O -0.536 6.536 14 C -0.125 4.125 15 H 0.120 0.880 16 C -0.142 4.142 17 C 0.520 3.480 18 O -0.525 6.525 19 N -0.535 5.535 20 C 0.012 3.988 21 C 0.044 3.956 22 N -0.279 5.279 23 N -0.475 5.475 24 H 0.444 0.556 25 C 0.040 3.960 26 C 0.117 3.883 27 C 0.439 3.561 28 F -0.196 7.196 29 F -0.181 7.181 30 F -0.193 7.193 31 H 0.277 0.723 32 H 0.403 0.597 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.189 0.811 36 H 0.192 0.808 37 H 0.090 0.910 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.493 -0.006 -9.072 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.111 4.111 3 Si 0.695 3.305 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.112 0.888 9 C 0.090 3.910 10 H 0.118 0.882 11 N -0.359 5.359 12 C 0.294 3.706 13 O -0.414 6.414 14 C -0.147 4.147 15 H 0.138 0.862 16 C -0.182 4.182 17 C 0.309 3.691 18 O -0.402 6.402 19 N -0.262 5.262 20 C -0.091 4.091 21 C -0.145 4.145 22 N -0.102 5.102 23 N -0.187 5.187 24 H 0.289 0.711 25 C -0.108 4.108 26 C -0.006 4.006 27 C 0.384 3.616 28 F -0.178 7.178 29 F -0.162 7.162 30 F -0.174 7.174 31 H 0.087 0.913 32 H 0.239 0.761 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.206 0.794 36 H 0.208 0.792 37 H 0.109 0.891 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.876 0.906 -9.130 17.478 hybrid contribution -0.569 0.424 -0.394 0.812 sum 14.307 1.330 -9.525 17.239 Atomic orbital electron populations 1.69849 1.06397 1.28503 1.44113 1.25002 0.94797 0.99245 0.92010 0.86948 0.80720 0.82952 0.79907 1.19150 1.20378 1.17858 1.20727 0.85923 0.96446 1.54249 0.88787 1.20308 0.96418 0.92169 0.82127 0.88205 1.47553 1.14785 1.60567 1.13021 1.20263 0.82523 0.78673 0.89170 1.90704 1.61193 1.45354 1.44116 1.22312 0.95243 1.01958 0.95171 0.86186 1.22315 0.97409 1.00891 0.97574 1.20899 0.83897 0.78829 0.85476 1.90658 1.84229 1.43019 1.22266 1.45245 1.03437 1.56130 1.21339 1.17601 0.85799 1.09540 0.96138 1.23729 0.88707 1.01596 1.00474 1.77266 1.20651 1.16142 0.96172 1.46140 1.04339 1.48661 1.19567 0.71094 1.22542 0.87297 1.02200 0.98802 1.22122 0.96281 0.97714 0.84461 1.21651 0.73802 0.86713 0.79473 1.93141 1.32516 1.96661 1.95434 1.93115 1.81335 1.96769 1.44985 1.93072 1.92651 1.52751 1.78976 0.91309 0.76104 0.86355 0.86758 0.79424 0.79155 0.89134 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.55 13.96 55.43 0.77 -21.77 16 2 C 0.10 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 18.96 27.58 -169.99 -4.69 14.28 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.25 -5.60 6.06 56.52 0.34 -5.26 16 7 C -0.54 -12.76 8.52 -34.44 -0.29 -13.06 16 8 H 0.09 2.44 8.00 -52.49 -0.42 2.02 16 9 C 0.19 4.05 1.56 -69.08 -0.11 3.94 16 10 H 0.10 2.27 4.58 -51.93 -0.24 2.03 16 11 N -0.71 -12.16 4.91 -54.93 -0.27 -12.43 16 12 C 0.51 8.09 6.71 -10.99 -0.07 8.02 16 13 O -0.54 -10.23 14.07 5.56 0.08 -10.15 16 14 C -0.12 -1.42 3.55 -90.14 -0.32 -1.74 16 15 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.14 -1.64 6.41 -26.74 -0.17 -1.81 16 17 C 0.52 6.87 7.98 -10.86 -0.09 6.78 16 18 O -0.53 -8.15 15.64 5.54 0.09 -8.06 16 19 N -0.54 -6.40 3.16 -112.48 -0.36 -6.75 16 20 C 0.01 0.14 6.80 -83.88 -0.57 -0.43 16 21 C 0.04 0.46 11.53 -17.22 -0.20 0.27 16 22 N -0.28 -3.13 12.69 30.70 0.39 -2.74 16 23 N -0.47 -4.38 7.40 30.69 0.23 -4.15 16 24 H 0.44 2.53 8.96 -182.62 -1.64 0.89 16 25 C 0.04 0.43 11.18 -16.68 -0.19 0.24 16 26 C 0.12 1.28 6.29 -3.12 -0.02 1.26 16 27 C 0.44 9.09 2.83 37.16 0.11 9.19 16 28 F -0.20 -3.97 15.83 2.25 0.04 -3.94 16 29 F -0.18 -3.91 16.89 2.25 0.04 -3.88 16 30 F -0.19 -3.82 16.93 2.25 0.04 -3.79 16 31 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.40 6.02 8.59 -40.82 -0.35 5.67 16 33 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.11 1.47 7.89 -51.93 -0.41 1.06 16 35 H 0.19 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.19 2.02 6.51 -52.49 -0.34 1.68 16 37 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.10 1.26 6.96 -51.93 -0.36 0.89 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -30.64 340.43 -5.18 -35.82 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.64 Total: 7.39 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: -2.02 Total: 15.04 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.76 Total: -47.85 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.16 Total: -18.21 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 0.11 Total: -11.60 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.69 Total: 14.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.64 -5.18 -35.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455987738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.131 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds