Wall clock time and date at job start Sat Apr 11 2020 07:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47290 * 264.73038 * 3 2 1 5 5 H 1.48497 * 109.47153 * 24.73647 * 3 2 1 6 6 H 1.48505 * 109.46855 * 144.73281 * 3 2 1 7 7 C 1.37882 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99953 * 4.99261 * 7 2 1 9 9 C 1.50701 * 119.99822 * 185.00344 * 7 2 1 10 10 H 1.08991 * 109.47523 * 25.11963 * 9 7 2 11 11 N 1.46503 * 109.46762 * 265.12057 * 9 7 2 12 12 C 1.34773 * 120.00173 * 155.00000 * 11 9 7 13 13 O 1.21281 * 119.99783 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00313 * 180.02562 * 12 11 9 15 15 H 1.08999 * 110.85287 * 303.78616 * 14 12 11 16 16 C 1.54626 * 110.97145 * 67.62159 * 14 12 11 17 17 C 1.51288 * 104.25672 * 142.69940 * 16 14 12 18 18 O 1.21303 * 124.94453 * 164.00627 * 17 16 14 19 19 N 1.34417 * 110.11372 * 344.14809 * 17 16 14 20 20 C 1.40764 * 124.34993 * 179.43837 * 19 17 16 21 21 C 1.40252 * 126.08193 * 179.73877 * 20 19 17 22 22 N 1.30823 * 108.33504 * 179.68193 * 21 20 19 23 23 N 1.40072 * 108.37038 * 0.44009 * 22 21 20 24 24 H 0.97000 * 126.05560 * 179.81910 * 23 22 21 25 25 C 1.35754 * 126.07695 * 359.69638 * 20 19 17 26 26 C 1.46767 * 111.29912 * 359.16918 * 19 17 16 27 27 C 1.53000 * 109.47153 * 145.12530 * 9 7 2 28 28 F 1.39901 * 109.47153 * 185.03109 * 27 9 7 29 29 F 1.39897 * 109.46748 * 305.03066 * 27 9 7 30 30 F 1.39904 * 109.47158 * 65.03165 * 27 9 7 31 31 H 0.96996 * 119.99890 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99977 * 335.00572 * 11 9 7 33 33 H 1.09000 * 110.48378 * 261.59578 * 16 14 12 34 34 H 1.08996 * 110.48536 * 24.10669 * 16 14 12 35 35 H 1.08004 * 125.83029 * 359.94759 * 21 20 19 36 36 H 1.07999 * 126.22328 * 0.05736 * 25 20 19 37 37 H 1.09004 * 110.24571 * 136.28774 * 26 19 17 38 38 H 1.09004 * 110.24100 * 258.28303 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6080 1.9822 -1.3941 5 1 1.3954 2.6822 0.5858 6 1 3.4866 1.4749 0.8084 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1276 -0.0823 9 6 3.5073 -1.1965 0.1133 10 1 3.8351 -0.2869 0.6163 11 7 4.0983 -1.2541 -1.2260 12 6 5.3404 -0.7748 -1.4356 13 8 5.9690 -0.2964 -0.5154 14 6 5.9481 -0.8335 -2.8134 15 1 5.9574 -1.8562 -3.1902 16 6 5.2038 0.1092 -3.7872 17 6 6.2971 0.6756 -4.6662 18 8 6.1155 1.2384 -5.7253 19 7 7.4993 0.4619 -4.1042 20 6 8.7242 0.8566 -4.6745 21 6 9.9964 0.6572 -4.1189 22 7 10.8864 1.1522 -4.9401 23 7 10.2154 1.6941 -6.0438 24 1 10.6286 2.1290 -6.8061 25 6 8.8841 1.4974 -5.8606 26 6 7.3703 -0.2304 -2.8165 27 6 3.9556 -2.4160 0.9213 28 9 5.3384 -2.3578 1.1250 29 9 3.3019 -2.4217 2.1582 30 9 3.6363 -3.5834 0.2196 31 1 -0.4850 0.8400 0.0004 32 1 3.5956 -1.6370 -1.9619 33 1 4.4827 -0.4502 -4.3832 34 1 4.7056 0.9084 -3.2384 35 1 10.2059 0.1735 -3.1762 36 1 8.0960 1.7967 -6.5356 37 1 8.1158 -1.0217 -2.7372 38 1 7.4817 0.4774 -1.9950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455987738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:26 Heat of formation + Delta-G solvation = -166.954149 kcal Electronic energy + Delta-G solvation = -30972.333845 eV Core-core repulsion = 26014.610028 eV Total energy + Delta-G solvation = -4957.723817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.80370 -48.31057 -48.29869 -42.59249 -41.48099 -40.23019 -37.53771 -36.52947 -34.58769 -34.09060 -32.34754 -31.08587 -29.48064 -28.82581 -26.85345 -24.94694 -23.77435 -22.88045 -22.20238 -21.24676 -20.43630 -19.92952 -19.28872 -19.18433 -18.64342 -18.51504 -18.23595 -17.53986 -17.00117 -16.66480 -16.31135 -15.88968 -15.54793 -15.51855 -15.44734 -15.19963 -15.12413 -14.83472 -14.80797 -14.74974 -14.59242 -14.49767 -14.44969 -14.19909 -13.93809 -13.79456 -13.67177 -12.92778 -12.63188 -12.53705 -12.41990 -12.07935 -11.96218 -11.73610 -11.40377 -11.26392 -11.03439 -10.73575 -10.71966 -10.09379 -8.79331 -8.51425 -6.69895 0.70944 1.14923 1.27752 1.35577 1.40239 1.47656 1.56627 1.98518 1.99936 2.14384 2.18394 2.23994 2.91606 3.10555 3.24242 3.40373 3.42499 3.57122 3.74203 3.87372 3.90509 3.97035 4.20406 4.43243 4.45826 4.50635 4.55923 4.66061 4.78598 4.91529 5.00361 5.06915 5.46907 5.71672 5.90364 5.91021 6.27074 6.48593 6.56526 6.70504 6.97624 7.03072 7.27875 8.60911 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.003349 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.711043 B = 8357.588316 C = 9381.672892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.063 3.937 3 Si 0.915 3.085 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.202 3.798 10 H 0.087 0.913 11 N -0.706 5.706 12 C 0.512 3.488 13 O -0.565 6.565 14 C -0.109 4.109 15 H 0.158 0.842 16 C -0.138 4.138 17 C 0.515 3.485 18 O -0.555 6.555 19 N -0.529 5.529 20 C -0.013 4.013 21 C 0.046 3.954 22 N -0.299 5.299 23 N -0.463 5.463 24 H 0.458 0.542 25 C 0.042 3.958 26 C 0.117 3.883 27 C 0.440 3.560 28 F -0.191 7.191 29 F -0.189 7.189 30 F -0.187 7.187 31 H 0.279 0.721 32 H 0.417 0.583 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.210 0.790 36 H 0.191 0.809 37 H 0.118 0.882 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.297 -0.240 -10.113 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.097 3.903 10 H 0.105 0.895 11 N -0.359 5.359 12 C 0.298 3.702 13 O -0.444 6.444 14 C -0.130 4.130 15 H 0.175 0.825 16 C -0.178 4.178 17 C 0.304 3.696 18 O -0.433 6.433 19 N -0.255 5.255 20 C -0.116 4.116 21 C -0.143 4.143 22 N -0.122 5.122 23 N -0.176 5.176 24 H 0.306 0.694 25 C -0.107 4.107 26 C -0.005 4.005 27 C 0.384 3.616 28 F -0.172 7.172 29 F -0.170 7.170 30 F -0.168 7.168 31 H 0.089 0.911 32 H 0.255 0.745 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.227 0.773 36 H 0.208 0.792 37 H 0.136 0.864 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.725 0.666 -10.205 19.604 hybrid contribution -1.034 0.452 -0.074 1.131 sum 15.690 1.118 -10.279 18.791 Atomic orbital electron populations 1.69933 1.07756 1.29285 1.46553 1.25541 0.95155 1.01761 0.91863 0.86220 0.79332 0.79958 0.80549 1.17517 1.20456 1.18299 1.20670 0.87342 0.95218 1.53916 0.91587 1.19933 0.94866 0.91834 0.83648 0.89546 1.47039 1.15732 1.61285 1.11797 1.20845 0.81483 0.77135 0.90713 1.90704 1.61734 1.46260 1.45741 1.22249 0.94900 1.04105 0.91789 0.82471 1.22327 0.97362 1.00719 0.97396 1.21132 0.84528 0.78633 0.85297 1.90643 1.84680 1.44438 1.23564 1.45245 1.03284 1.55683 1.21291 1.17857 0.86110 1.10769 0.96846 1.24074 0.88018 1.01117 1.01043 1.77241 1.21269 1.16814 0.96847 1.46182 1.03804 1.48009 1.19638 0.69438 1.22615 0.87826 1.01646 0.98641 1.22174 0.96699 0.98063 0.83517 1.21583 0.73955 0.86865 0.79158 1.93150 1.32026 1.96661 1.95392 1.93100 1.81560 1.96820 1.45566 1.93082 1.92632 1.52337 1.78771 0.91124 0.74540 0.84091 0.88008 0.77297 0.79180 0.86367 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.09 13.96 21.45 0.30 -47.79 16 2 C 0.06 3.13 5.47 84.66 0.46 3.59 16 3 Si 0.92 38.67 27.58 68.60 1.89 40.57 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -11.01 6.06 99.48 0.60 -10.41 16 7 C -0.53 -25.45 8.52 25.60 0.22 -25.23 16 8 H 0.07 3.49 8.00 -2.91 -0.02 3.47 16 9 C 0.20 8.30 1.56 44.25 0.07 8.37 16 10 H 0.09 3.84 4.58 -2.39 -0.01 3.83 16 11 N -0.71 -22.84 4.91 -446.10 -2.19 -25.03 16 12 C 0.51 14.96 6.71 87.66 0.59 15.55 16 13 O -0.57 -20.44 14.07 -3.03 -0.04 -20.49 16 14 C -0.11 -2.10 3.55 -10.48 -0.04 -2.14 16 15 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 16 C -0.14 -2.81 6.41 30.59 0.20 -2.62 16 17 C 0.51 12.54 7.98 87.90 0.70 13.24 16 18 O -0.55 -16.47 15.64 -3.10 -0.05 -16.52 16 19 N -0.53 -11.40 3.16 -628.35 -1.99 -13.39 16 20 C -0.01 -0.29 6.80 37.62 0.26 -0.03 16 21 C 0.05 0.86 11.53 85.33 0.98 1.85 16 22 N -0.30 -6.10 12.69 -56.77 -0.72 -6.82 16 23 N -0.46 -7.72 7.40 -56.81 -0.42 -8.14 16 24 H 0.46 4.44 8.96 -213.34 -1.91 2.53 16 25 C 0.04 0.84 11.18 83.50 0.93 1.78 16 26 C 0.12 2.22 6.29 86.83 0.55 2.76 16 27 C 0.44 17.75 2.83 71.98 0.20 17.95 16 28 F -0.19 -7.42 15.83 44.97 0.71 -6.71 16 29 F -0.19 -8.12 16.89 44.97 0.76 -7.36 16 30 F -0.19 -7.15 16.93 44.97 0.76 -6.39 16 31 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.42 11.47 8.59 -92.71 -0.80 10.67 16 33 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.10 2.40 7.89 -2.39 -0.02 2.38 16 35 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.19 3.84 6.51 -2.91 -0.02 3.82 16 37 H 0.12 1.61 8.13 -2.39 -0.02 1.59 16 38 H 0.09 1.95 6.96 -2.38 -0.02 1.94 16 Total: -1.00 -65.87 340.43 2.50 -63.36 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -1.63 Total: 19.64 kcal Atomic # 6 Polarization: 29.96 SS G_CDS: 5.12 Total: 35.08 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.02 Total: -101.17 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.09 Total: -37.01 kcal Atomic # 9 Polarization: -22.69 SS G_CDS: 2.23 Total: -20.46 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.89 Total: 40.57 kcal Total: -65.87 2.50 -63.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455987738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.592 kcal (2) G-P(sol) polarization free energy of solvation -65.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds