Wall clock time and date at job start Sat Apr 11 2020 07:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 S 1.81001 * 109.46853 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99955 * 179.97438 * 18 17 15 20 20 N 1.31554 * 126.45194 * 0.02562 * 19 18 17 21 21 N 1.28419 * 110.49728 * 180.02562 * 20 19 18 22 22 N 1.28907 * 110.34186 * 359.97438 * 21 20 19 23 23 N 1.35390 * 126.45563 * 179.71322 * 19 18 17 24 24 C 1.46502 * 127.38129 * 359.97438 * 23 19 18 25 25 C 1.53008 * 117.49831 * 188.62109 * 24 23 19 26 26 C 1.52993 * 59.99714 * 252.51121 * 25 24 23 27 27 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 28 28 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 29 29 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 30 30 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 31 31 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 32 32 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 33 33 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 34 34 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 35 35 H 1.09000 * 115.55258 * 334.32928 * 24 23 19 36 36 H 1.09004 * 117.49643 * 0.02562 * 25 24 23 37 37 H 1.09003 * 117.49449 * 145.02009 * 25 24 23 38 38 H 1.09004 * 117.49860 * 252.50491 * 26 25 24 39 39 H 1.09001 * 117.51453 * 107.48698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 16 9.5677 2.3396 2.1037 19 6 10.0230 3.8200 2.9437 20 7 9.2058 4.6732 3.5223 21 7 9.8648 5.6454 4.0418 22 7 11.1282 5.4894 3.8388 23 7 11.2801 4.2906 3.1204 24 6 12.5306 3.6825 2.6592 25 6 13.8406 4.2985 3.1546 26 6 13.4022 4.4984 1.7025 27 7 3.9627 -0.1379 0.8260 28 1 -0.4849 -0.8367 -0.0743 29 1 3.6505 -3.3070 -0.2314 30 1 6.0600 -3.3167 0.3599 31 1 7.0783 -1.2412 1.2628 32 1 5.2413 1.7380 2.0256 33 1 7.3876 3.3159 1.8351 34 1 7.5194 2.4087 3.3610 35 1 12.5038 2.6020 2.5181 36 1 13.7720 5.1560 3.8241 37 1 14.6759 3.6231 3.3397 38 1 13.9492 3.9548 0.9322 39 1 13.0451 5.4877 1.4160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471516623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:47 Heat of formation + Delta-G solvation = 148.094270 kcal Electronic energy + Delta-G solvation = -25997.950575 eV Core-core repulsion = 22070.790645 eV Total energy + Delta-G solvation = -3927.159930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.095 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.20315 -40.35030 -38.28508 -38.22231 -34.79398 -33.63174 -33.53029 -32.60312 -31.17148 -31.00387 -28.96307 -25.80945 -25.39553 -23.80731 -23.12990 -22.68090 -21.98037 -21.83165 -20.12542 -18.91582 -18.38620 -17.60511 -17.11683 -16.92852 -16.90371 -15.91054 -15.77316 -15.14614 -14.83359 -14.64714 -14.22991 -14.07231 -13.98573 -13.53754 -13.31182 -13.01705 -12.80514 -12.56704 -12.53963 -12.29260 -12.27044 -11.95211 -11.64807 -11.35849 -11.31755 -11.27069 -11.07401 -10.95584 -10.44139 -10.40305 -10.10119 -9.86484 -9.49657 -9.15577 -8.61371 -8.38136 -7.99567 -7.54087 -7.34330 -4.83165 0.25116 0.47303 1.31917 1.55615 1.86597 1.96313 2.58639 2.82337 2.89952 3.02737 3.42905 3.55508 3.59391 3.84802 3.95798 4.08805 4.21308 4.27196 4.41603 4.51050 4.64290 4.73717 4.90618 4.95415 4.97229 5.00256 5.25057 5.37965 5.45692 5.71198 5.76225 5.93646 6.34128 6.41588 6.45557 6.99772 7.05896 7.35940 7.41857 7.50229 7.66530 7.98576 8.05256 8.09597 8.28343 8.57397 9.33974 9.91317 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.002354 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.235452 B =11889.517226 C =12924.533562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.048 3.952 3 Si 1.142 2.858 4 H -0.286 1.286 5 H -0.280 1.280 6 H -0.325 1.325 7 C -0.478 4.478 8 H 0.085 0.915 9 C 0.273 3.727 10 C -0.273 4.273 11 C -0.036 4.036 12 C -0.310 4.310 13 C 0.380 3.620 14 N -0.643 5.643 15 C 0.536 3.464 16 O -0.501 6.501 17 C -0.155 4.155 18 S 0.125 5.875 19 C 0.203 3.797 20 N -0.336 5.336 21 N -0.030 5.030 22 N -0.085 5.085 23 N -0.335 5.335 24 C 0.056 3.944 25 C -0.155 4.155 26 C -0.164 4.164 27 N -0.593 5.593 28 H 0.285 0.715 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.412 0.588 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.466 6.800 4.563 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.174 4.174 3 Si 0.975 3.025 4 H -0.213 1.213 5 H -0.207 1.207 6 H -0.257 1.257 7 C -0.510 4.510 8 H 0.103 0.897 9 C 0.150 3.850 10 C -0.296 4.296 11 C -0.061 4.061 12 C -0.335 4.335 13 C 0.149 3.851 14 N -0.288 5.288 15 C 0.320 3.680 16 O -0.376 6.376 17 C -0.307 4.307 18 S 0.350 5.650 19 C -0.181 4.181 20 N -0.193 5.193 21 N -0.026 5.026 22 N -0.072 5.072 23 N -0.133 5.133 24 C -0.048 4.048 25 C -0.192 4.192 26 C -0.202 4.202 27 N -0.318 5.318 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.155 0.845 32 H 0.248 0.752 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 23.537 8.867 4.574 25.565 hybrid contribution -0.299 -1.988 0.261 2.027 sum 23.238 6.879 4.835 24.713 Atomic orbital electron populations 1.70613 1.08270 1.33114 1.30164 1.27680 0.95236 1.05987 0.88514 0.82160 0.72818 0.70075 0.77492 1.21341 1.20718 1.25743 1.20683 0.93112 0.97059 1.40141 0.89738 1.18175 0.92953 0.85992 0.87927 1.21644 0.94638 0.99824 1.13479 1.20913 0.94355 0.96322 0.94466 1.21465 1.01741 0.92910 1.17377 1.18004 0.89876 0.84135 0.93039 1.43051 1.06442 1.19918 1.59399 1.19350 0.82376 0.86092 0.80195 1.90695 1.61116 1.43006 1.42793 1.23877 0.95637 1.02994 1.08165 1.86476 1.03183 1.12038 1.63314 1.28207 0.84948 1.03429 1.01553 1.74981 1.26631 1.01473 1.16171 1.77860 0.97217 1.15193 1.12313 1.82433 1.13115 0.98618 1.13035 1.50934 1.05941 1.17073 1.39319 1.22272 0.78652 0.97147 1.06748 1.23427 0.94330 1.03718 0.97754 1.23549 1.00604 1.02048 0.94020 1.66176 1.10040 1.30371 1.25173 0.90360 0.87606 0.87537 0.84453 0.75205 0.84667 0.84612 0.82364 0.86712 0.86325 0.86156 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.20 13.65 55.55 0.76 -20.44 16 2 C 0.05 1.27 5.51 -17.34 -0.10 1.17 16 3 Si 1.14 26.74 25.93 -169.99 -4.41 22.34 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.67 6.55 56.52 0.37 -6.30 16 6 H -0.33 -7.54 7.11 56.52 0.40 -7.14 16 7 C -0.48 -12.64 9.51 -37.74 -0.36 -13.00 16 8 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 9 C 0.27 6.95 6.27 -85.00 -0.53 6.42 16 10 C -0.27 -6.30 9.83 -38.66 -0.38 -6.68 16 11 C -0.04 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.31 -6.57 8.83 -38.89 -0.34 -6.91 16 13 C 0.38 8.21 7.51 -154.96 -1.16 7.05 16 14 N -0.64 -10.80 5.41 -11.40 -0.06 -10.86 16 15 C 0.54 7.77 7.69 -10.98 -0.08 7.68 16 16 O -0.50 -8.58 12.66 5.57 0.07 -8.51 16 17 C -0.15 -1.59 5.72 36.01 0.21 -1.38 16 18 S 0.13 1.24 21.10 -107.50 -2.27 -1.03 16 19 C 0.20 2.24 8.15 -89.17 -0.73 1.51 16 20 N -0.34 -4.40 11.57 30.50 0.35 -4.04 16 21 N -0.03 -0.42 13.38 60.35 0.81 0.39 16 22 N -0.09 -1.04 13.45 60.35 0.81 -0.23 16 23 N -0.34 -3.38 4.01 -54.80 -0.22 -3.60 16 24 C 0.06 0.35 6.73 -67.93 -0.46 -0.11 16 25 C -0.15 -0.68 10.22 -26.73 -0.27 -0.95 16 26 C -0.16 -0.74 10.46 -26.74 -0.28 -1.02 16 27 N -0.59 -14.40 5.08 -10.26 -0.05 -14.45 16 28 H 0.29 7.23 8.73 -40.82 -0.36 6.87 16 29 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 30 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.14 2.78 5.33 -52.50 -0.28 2.50 16 32 H 0.41 5.95 8.83 -40.82 -0.36 5.59 16 33 H 0.14 1.20 8.14 -51.91 -0.42 0.78 16 34 H 0.14 1.18 8.14 -51.92 -0.42 0.75 16 35 H 0.16 0.68 8.08 -51.93 -0.42 0.27 16 36 H 0.11 0.65 7.91 -51.93 -0.41 0.24 16 37 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -32.11 357.34 -7.75 -39.86 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.04 Total: 2.58 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -4.89 Total: -7.38 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 2.40 Total: -53.25 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.41 Total: 22.34 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.27 Total: -1.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.11 -7.75 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471516623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.955 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds