Wall clock time and date at job start Sat Apr 11 2020 07:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 S 1.81001 * 109.46853 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99955 * 179.97438 * 18 17 15 20 20 N 1.31554 * 126.45194 * 0.02562 * 19 18 17 21 21 N 1.28419 * 110.49728 * 180.02562 * 20 19 18 22 22 N 1.28907 * 110.34186 * 359.97438 * 21 20 19 23 23 N 1.35390 * 126.45563 * 179.71322 * 19 18 17 24 24 C 1.46502 * 127.38129 * 359.97438 * 23 19 18 25 25 C 1.53008 * 117.49831 * 188.62109 * 24 23 19 26 26 C 1.52993 * 59.99714 * 252.51121 * 25 24 23 27 27 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 28 28 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 29 29 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 30 30 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 31 31 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 32 32 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 33 33 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 34 34 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 35 35 H 1.09000 * 115.55258 * 334.32928 * 24 23 19 36 36 H 1.09004 * 117.49643 * 0.02562 * 25 24 23 37 37 H 1.09003 * 117.49449 * 145.02009 * 25 24 23 38 38 H 1.09004 * 117.49860 * 252.50491 * 26 25 24 39 39 H 1.09001 * 117.51453 * 107.48698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 16 9.5677 2.3396 2.1037 19 6 10.0230 3.8200 2.9437 20 7 9.2058 4.6732 3.5223 21 7 9.8648 5.6454 4.0418 22 7 11.1282 5.4894 3.8388 23 7 11.2801 4.2906 3.1204 24 6 12.5306 3.6825 2.6592 25 6 13.8406 4.2985 3.1546 26 6 13.4022 4.4984 1.7025 27 7 3.9627 -0.1379 0.8260 28 1 -0.4849 -0.8367 -0.0743 29 1 3.6505 -3.3070 -0.2314 30 1 6.0600 -3.3167 0.3599 31 1 7.0783 -1.2412 1.2628 32 1 5.2413 1.7380 2.0256 33 1 7.3876 3.3159 1.8351 34 1 7.5194 2.4087 3.3610 35 1 12.5038 2.6020 2.5181 36 1 13.7720 5.1560 3.8241 37 1 14.6759 3.6231 3.3397 38 1 13.9492 3.9548 0.9322 39 1 13.0451 5.4877 1.4160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471516623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:46 Heat of formation + Delta-G solvation = 127.992133 kcal Electronic energy + Delta-G solvation = -25998.822269 eV Core-core repulsion = 22070.790645 eV Total energy + Delta-G solvation = -3928.031624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.095 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.05795 -41.75778 -39.90258 -38.72235 -36.33861 -35.41317 -34.26083 -33.49146 -32.95265 -32.28125 -30.42348 -27.26001 -26.53361 -24.62242 -24.15128 -23.57212 -23.46528 -22.70166 -21.58372 -20.35703 -19.64437 -18.77109 -18.23740 -18.03900 -17.74565 -17.09498 -16.87935 -16.29593 -16.25507 -15.78845 -15.62946 -15.43323 -14.95353 -14.68124 -14.55336 -14.33289 -14.15328 -14.01362 -13.68893 -13.55823 -13.24927 -12.98334 -12.74231 -12.61155 -12.43862 -12.17395 -12.12558 -11.92885 -11.85852 -11.70248 -11.61623 -11.05413 -10.99180 -10.94639 -10.38859 -9.84211 -9.31911 -9.26079 -9.12485 -6.78878 -0.57012 -0.34243 0.44423 0.49556 0.77513 0.88908 0.95287 1.39075 1.53316 1.71575 1.77803 2.00869 2.40530 2.48666 2.63836 3.03250 3.22049 3.44370 3.58142 3.63471 3.73370 3.86336 4.02967 4.09523 4.19573 4.20628 4.41026 4.45305 4.63966 4.65173 4.71473 4.78570 4.90037 5.06472 5.12197 5.33604 5.39363 5.41795 5.73818 5.78861 5.94218 6.20511 6.41753 6.64209 6.85140 7.16372 7.52687 7.94262 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.002354 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.235452 B =11889.517226 C =12924.533562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.020 3.980 3 Si 1.173 2.827 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.324 1.324 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.292 4.292 11 C -0.029 4.029 12 C -0.304 4.304 13 C 0.372 3.628 14 N -0.643 5.643 15 C 0.544 3.456 16 O -0.525 6.525 17 C -0.153 4.153 18 S 0.152 5.848 19 C 0.197 3.803 20 N -0.353 5.353 21 N -0.058 5.058 22 N -0.095 5.095 23 N -0.326 5.326 24 C 0.027 3.973 25 C -0.145 4.145 26 C -0.154 4.154 27 N -0.607 5.607 28 H 0.282 0.718 29 H 0.113 0.887 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.423 0.577 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.099 0.901 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.918 6.967 4.967 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.198 4.198 3 Si 1.002 2.998 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.133 3.867 10 C -0.314 4.314 11 C -0.054 4.054 12 C -0.328 4.328 13 C 0.140 3.860 14 N -0.290 5.290 15 C 0.330 3.670 16 O -0.401 6.401 17 C -0.304 4.304 18 S 0.376 5.624 19 C -0.186 4.186 20 N -0.211 5.211 21 N -0.053 5.053 22 N -0.083 5.083 23 N -0.124 5.124 24 C -0.076 4.076 25 C -0.182 4.182 26 C -0.192 4.192 27 N -0.332 5.332 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.261 0.739 33 H 0.172 0.828 34 H 0.175 0.825 35 H 0.197 0.803 36 H 0.118 0.882 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.024 9.051 5.002 28.934 hybrid contribution -1.032 -2.132 0.141 2.373 sum 25.991 6.919 5.143 27.384 Atomic orbital electron populations 1.70642 1.08600 1.32928 1.32682 1.28469 0.95475 1.07814 0.88003 0.81764 0.71636 0.68180 0.78191 1.19581 1.21489 1.25637 1.20654 0.94217 0.96696 1.42897 0.91414 1.18345 0.92940 0.87368 0.88002 1.21800 0.95715 0.99495 1.14416 1.21338 0.93672 0.97684 0.92657 1.21872 1.02405 0.92755 1.15753 1.18366 0.89195 0.86032 0.92381 1.43102 1.07540 1.18970 1.59356 1.19906 0.81240 0.86701 0.79160 1.90667 1.61383 1.44341 1.43720 1.23847 0.96151 1.01294 1.09090 1.86451 1.02169 1.10957 1.62836 1.28330 0.85196 1.03566 1.01554 1.74875 1.27535 1.01838 1.16833 1.77838 0.97841 1.16106 1.13546 1.82349 1.12687 0.99760 1.13459 1.51183 1.06906 1.16190 1.38122 1.22888 0.77856 0.98300 1.08516 1.23534 0.93948 1.03403 0.97349 1.23642 0.99633 1.01220 0.94739 1.66146 1.11442 1.30191 1.25372 0.90749 0.86895 0.83805 0.82892 0.73852 0.82826 0.82502 0.80277 0.88233 0.83504 0.83489 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.09 13.65 21.84 0.30 -44.79 16 2 C 0.02 1.07 5.51 85.29 0.47 1.54 16 3 Si 1.17 54.22 25.93 68.60 1.78 56.00 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.44 6.55 99.48 0.65 -12.79 16 6 H -0.32 -14.73 7.11 99.48 0.71 -14.03 16 7 C -0.51 -27.94 9.51 23.47 0.22 -27.72 16 8 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 9 C 0.26 13.19 6.27 40.21 0.25 13.44 16 10 C -0.29 -13.23 9.83 22.87 0.22 -13.00 16 11 C -0.03 -1.15 10.15 22.40 0.23 -0.92 16 12 C -0.30 -12.02 8.83 22.71 0.20 -11.82 16 13 C 0.37 15.29 7.51 133.23 1.00 16.30 16 14 N -0.64 -19.92 5.41 -308.38 -1.67 -21.59 16 15 C 0.54 14.08 7.69 87.66 0.67 14.75 16 16 O -0.52 -16.29 12.66 -2.99 -0.04 -16.33 16 17 C -0.15 -2.63 5.72 71.24 0.41 -2.23 16 18 S 0.15 2.53 21.10 -56.49 -1.19 1.34 16 19 C 0.20 3.95 8.15 179.84 1.47 5.41 16 20 N -0.35 -8.73 11.57 -57.41 -0.66 -9.40 16 21 N -0.06 -1.57 13.38 37.02 0.50 -1.08 16 22 N -0.10 -2.26 13.45 37.02 0.50 -1.76 16 23 N -0.33 -6.01 4.01 -327.28 -1.31 -7.33 16 24 C 0.03 0.26 6.73 44.99 0.30 0.56 16 25 C -0.14 -0.90 10.22 30.59 0.31 -0.59 16 26 C -0.15 -0.98 10.46 30.59 0.32 -0.66 16 27 N -0.61 -28.90 5.08 -186.36 -0.95 -29.85 16 28 H 0.28 14.94 8.73 -92.71 -0.81 14.13 16 29 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.15 5.64 5.33 -3.19 -0.02 5.63 16 32 H 0.42 11.12 8.83 -92.70 -0.82 10.31 16 33 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.16 2.16 8.14 -2.40 -0.02 2.14 16 35 H 0.18 0.94 8.08 -2.39 -0.02 0.93 16 36 H 0.10 0.98 7.91 -2.38 -0.02 0.96 16 37 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.15 0.16 8.14 -2.38 -0.02 0.14 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -70.50 357.34 3.54 -66.96 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.22 Total: 12.75 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 6.08 Total: -4.93 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -3.30 Total: -115.79 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.04 Total: -16.33 kcal Atomic # 14 Polarization: 54.22 SS G_CDS: 1.78 Total: 56.00 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.19 Total: 1.34 kcal Total: -70.50 3.54 -66.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471516623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.949 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds