Wall clock time and date at job start Sat Apr 11 2020 07:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34770 * 116.99644 * 2 1 4 4 O 1.21536 * 120.00409 * 0.02562 * 3 2 1 5 5 C 1.47234 * 119.99961 * 179.97438 * 3 2 1 6 6 C 1.36500 * 127.19846 * 0.02987 * 5 3 2 7 7 O 1.33628 * 108.38146 * 179.97438 * 6 5 3 8 8 C 1.34224 * 110.92575 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.42692 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47264 * 270.02612 * 9 8 7 11 11 S 1.65592 * 120.00008 * 165.00087 * 10 9 8 12 12 O 1.42104 * 106.40287 * 178.54225 * 11 10 9 13 13 O 1.42098 * 106.40238 * 311.45668 * 11 10 9 14 14 N 1.65600 * 107.21780 * 64.99980 * 11 10 9 15 15 C 1.46495 * 119.99862 * 269.99716 * 14 11 10 16 16 C 1.46499 * 119.99738 * 90.00348 * 14 11 10 17 17 H 1.08998 * 109.47606 * 359.97438 * 16 14 11 18 18 C 1.52999 * 109.47593 * 120.00067 * 16 14 11 19 19 C 1.50709 * 109.46684 * 239.99742 * 16 14 11 20 20 H 1.07994 * 119.99853 * 359.97438 * 19 16 14 21 21 C 1.37882 * 120.00118 * 180.02562 * 19 16 14 22 22 N 1.31519 * 119.99634 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 120.00150 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47108 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47002 * 119.99720 * 23 21 19 26 26 H 1.48494 * 109.47137 * 239.99868 * 23 21 19 27 27 C 1.34149 * 109.14243 * 0.02562 * 8 7 6 28 28 H 1.08997 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47690 * 299.99951 * 1 2 3 30 30 H 1.09004 * 109.47020 * 59.99791 * 1 2 3 31 31 H 1.07997 * 125.80932 * 359.97438 * 6 5 3 32 32 H 1.09004 * 109.46961 * 30.02719 * 9 8 7 33 33 H 1.08996 * 109.46657 * 150.02741 * 9 8 7 34 34 H 0.96999 * 119.99440 * 345.00472 * 10 9 8 35 35 H 1.08998 * 109.47127 * 90.00623 * 15 14 11 36 36 H 1.09004 * 109.47285 * 209.99776 * 15 14 11 37 37 H 1.08990 * 109.47374 * 330.00068 * 15 14 11 38 38 H 1.08998 * 109.47029 * 59.99176 * 18 16 14 39 39 H 1.08998 * 109.47637 * 179.97438 * 18 16 14 40 40 H 1.09003 * 109.46962 * 299.99825 * 18 16 14 41 41 H 0.96998 * 119.99675 * 179.97438 * 22 21 19 42 42 H 1.08000 * 127.02391 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4018 2.2201 0.0005 5 6 3.5341 1.2780 0.0006 6 6 4.4151 0.2354 0.0006 7 8 5.6557 0.7321 0.0006 8 6 5.6347 2.0742 0.0001 9 6 6.8490 2.9668 0.0005 10 7 7.2419 3.2561 1.3819 11 16 8.7363 3.8941 1.7013 12 8 8.7974 4.0883 3.1077 13 8 9.6727 3.1010 0.9849 14 7 8.7815 5.4021 1.0185 15 6 9.2459 5.5680 -0.3609 16 6 8.3573 6.5703 1.7941 17 1 8.0475 6.2526 2.7897 18 6 9.5226 7.5548 1.9122 19 6 7.2009 7.2418 1.0990 20 1 6.8205 6.8389 0.1721 21 6 6.6294 8.3711 1.6459 22 7 7.0931 8.8620 2.7745 23 14 5.1957 9.2030 0.7847 24 1 4.8658 8.4596 -0.4577 25 1 4.0149 9.2116 1.6853 26 1 5.5669 10.5993 0.4418 27 6 4.3607 2.4943 0.0002 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.1541 -0.8125 0.0005 32 1 7.6690 2.4649 -0.5130 33 1 6.6147 3.8990 -0.5134 34 1 6.6267 3.0738 2.1094 35 1 8.3989 5.4847 -1.0419 36 1 9.7073 6.5491 -0.4736 37 1 9.9768 4.7938 -0.5938 38 1 9.8321 7.8725 0.9165 39 1 9.2068 8.4242 2.4889 40 1 10.3590 7.0691 2.4149 41 1 6.6913 9.6567 3.1591 42 1 4.0131 3.5168 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475542921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:51 Heat of formation + Delta-G solvation = -162.705985 kcal Electronic energy + Delta-G solvation = -28651.746759 eV Core-core repulsion = 24339.215097 eV Total energy + Delta-G solvation = -4312.531662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.112 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.74642 -41.22444 -38.34695 -37.87770 -37.52123 -36.90266 -36.59733 -34.48588 -34.08613 -31.50020 -30.88203 -28.77565 -27.28127 -26.95556 -26.56244 -25.04011 -22.59119 -22.29095 -21.36415 -20.41832 -19.25207 -18.72122 -18.27489 -18.26070 -18.13904 -17.63786 -17.32243 -17.05353 -16.95689 -16.60437 -15.94533 -15.27597 -15.17600 -14.91348 -14.73543 -14.58650 -14.35708 -14.33687 -13.98019 -13.63156 -13.53485 -13.42449 -13.20698 -13.14249 -13.02314 -12.91505 -12.81289 -12.73755 -12.58277 -12.20377 -12.12173 -11.86247 -11.85067 -11.83686 -11.14203 -11.04197 -10.61272 -10.48468 -9.89945 -9.61682 -8.07713 -6.21522 -0.35747 0.07799 0.75053 1.44138 1.48486 1.52333 1.56709 1.74850 1.92009 2.08996 2.46553 2.63002 3.21714 3.33075 3.47427 3.53485 3.91545 4.05968 4.14656 4.25490 4.32091 4.33741 4.43746 4.57849 4.69059 4.71684 4.79251 4.86413 4.91168 5.00046 5.09565 5.09943 5.20813 5.23229 5.23971 5.64555 5.71403 5.86327 5.88248 5.99843 6.14519 6.32236 6.63157 6.88880 7.48480 8.96963 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.003538 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.188506 B = 7912.166768 C =10016.847984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.540 3.460 4 O -0.544 6.544 5 C -0.266 4.266 6 C 0.100 3.900 7 O -0.165 6.165 8 C -0.018 4.018 9 C 0.199 3.801 10 N -1.121 6.121 11 S 2.803 3.197 12 O -1.015 7.015 13 O -1.000 7.000 14 N -0.995 5.995 15 C 0.088 3.912 16 C 0.273 3.727 17 H 0.025 0.975 18 C -0.141 4.141 19 C -0.524 4.524 20 H 0.073 0.927 21 C 0.016 3.984 22 N -0.919 5.919 23 Si 0.953 3.047 24 H -0.262 1.262 25 H -0.291 1.291 26 H -0.284 1.284 27 C -0.146 4.146 28 H 0.140 0.860 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.268 0.732 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.421 0.579 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -19.111 -9.286 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.269 6.269 3 C 0.387 3.613 4 O -0.435 6.435 5 C -0.269 4.269 6 C 0.029 3.971 7 O -0.060 6.060 8 C -0.068 4.068 9 C 0.073 3.927 10 N -0.882 5.882 11 S 2.812 3.188 12 O -1.000 7.000 13 O -0.984 6.984 14 N -0.837 5.837 15 C -0.057 4.057 16 C 0.168 3.832 17 H 0.043 0.957 18 C -0.201 4.201 19 C -0.563 4.563 20 H 0.091 0.909 21 C -0.183 4.183 22 N -0.559 5.559 23 Si 0.780 3.220 24 H -0.186 1.186 25 H -0.217 1.217 26 H -0.210 1.210 27 C -0.166 4.166 28 H 0.158 0.842 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.284 0.716 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.255 0.745 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.331 -19.234 -8.859 22.102 hybrid contribution -1.893 1.334 0.204 2.325 sum -8.224 -17.900 -8.655 21.516 Atomic orbital electron populations 1.23602 0.74085 1.06085 1.02510 1.86508 1.25326 1.30968 1.84107 1.20196 0.87851 0.81604 0.71662 1.90863 1.67351 1.37383 1.47947 1.20566 0.90462 0.95245 1.20593 1.25553 0.78824 1.00537 0.92204 1.83842 1.30970 1.21146 1.69999 1.21969 0.95943 0.80669 1.08206 1.19806 0.93168 0.96885 0.82802 1.55926 1.37011 1.80947 1.14346 1.01039 0.73208 0.72541 0.71993 1.93556 1.86873 1.86549 1.33008 1.93524 1.60962 1.68968 1.74897 1.57545 1.79296 1.22875 1.23952 1.21555 0.99745 1.03691 0.80701 1.18393 0.92655 0.82055 0.90088 0.95694 1.21956 0.96530 1.01167 1.00400 1.21696 1.15070 1.10617 1.08927 0.90878 1.25640 0.99364 0.97810 0.95487 1.70022 1.42527 1.23413 1.19899 0.85583 0.79216 0.78420 0.78816 1.18570 1.21732 1.20959 1.22662 0.91032 0.99298 1.03639 0.84172 0.92247 0.91991 0.71646 0.87125 0.87019 0.74470 0.91745 0.90829 0.90080 0.93414 0.91351 0.96098 0.92901 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.56 16 2 O -0.35 -6.16 10.42 -56.81 -0.59 -6.75 16 3 C 0.54 13.00 7.95 70.19 0.56 13.56 16 4 O -0.54 -17.20 16.77 19.72 0.33 -16.87 16 5 C -0.27 -5.80 6.31 -19.00 -0.12 -5.92 16 6 C 0.10 1.47 11.94 67.41 0.80 2.28 16 7 O -0.17 -3.17 10.52 4.60 0.05 -3.12 16 8 C -0.02 -0.41 6.67 24.75 0.17 -0.25 16 9 C 0.20 4.61 6.76 85.63 0.58 5.19 16 10 N -1.12 -32.21 6.05 -190.78 -1.15 -33.37 16 11 S 2.80 101.15 6.14 -56.49 -0.35 100.81 16 12 O -1.02 -45.14 16.70 -128.00 -2.14 -47.28 16 13 O -1.00 -36.42 16.21 -128.00 -2.07 -38.49 16 14 N -0.99 -37.78 3.12 -520.46 -1.62 -39.40 16 15 C 0.09 2.70 9.90 127.77 1.26 3.96 16 16 C 0.27 12.89 2.62 44.25 0.12 13.01 16 17 H 0.03 1.36 6.91 -2.39 -0.02 1.35 16 18 C -0.14 -6.56 8.95 71.98 0.64 -5.92 16 19 C -0.52 -25.79 8.37 25.60 0.21 -25.58 16 20 H 0.07 3.38 7.64 -2.91 -0.02 3.36 16 21 C 0.02 0.85 5.30 84.66 0.45 1.30 16 22 N -0.92 -50.88 11.32 21.45 0.24 -50.63 16 23 Si 0.95 41.55 29.54 68.60 2.03 43.58 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 C -0.15 -3.59 10.90 23.65 0.26 -3.33 16 28 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.27 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.11 2.25 7.75 -2.38 -0.02 2.23 16 33 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.42 11.53 8.64 -96.75 -0.84 10.69 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.30 6.43 -2.38 -0.02 2.29 16 37 H 0.08 2.18 7.02 -2.39 -0.02 2.16 16 38 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16 39 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 42 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -73.51 374.75 1.08 -72.43 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.23 Total: 19.23 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.13 Total: -0.13 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -2.53 Total: -123.40 kcal Atomic # 8 Polarization: -108.08 SS G_CDS: -4.43 Total: -112.51 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 101.15 SS G_CDS: -0.35 Total: 100.81 kcal Total: -73.51 1.08 -72.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475542921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.275 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds