Wall clock time and date at job start Sat Apr 11 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46493 * 120.00549 * 2 1 4 4 C 1.52997 * 109.47356 * 270.00468 * 3 2 1 5 5 N 1.46903 * 109.47164 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99508 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46705 * 180.02562 * 6 5 4 8 8 N 1.30471 * 125.64681 * 90.02094 * 7 6 5 9 9 C 1.34162 * 109.27129 * 179.97438 * 8 7 6 10 10 C 1.34794 * 108.01564 * 0.02562 * 9 8 7 11 11 Cl 1.73602 * 126.60058 * 179.74000 * 10 9 8 12 12 N 1.35164 * 125.64330 * 270.02598 * 7 6 5 13 13 C 1.46502 * 126.39816 * 0.03466 * 12 7 6 14 14 C 1.34781 * 119.99678 * 180.02562 * 2 1 3 15 15 O 1.21284 * 119.99896 * 179.97438 * 14 2 1 16 16 C 1.50696 * 120.00066 * 0.02562 * 14 2 1 17 17 S 1.80999 * 109.47339 * 179.97438 * 16 14 2 18 18 C 1.76198 * 100.00434 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99730 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00300 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00056 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99967 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47200 * 89.99925 * 22 20 18 24 24 H 1.48502 * 109.46939 * 209.99673 * 22 20 18 25 25 H 1.48498 * 109.47069 * 329.99862 * 22 20 18 26 26 H 1.08997 * 109.47555 * 89.99693 * 1 2 3 27 27 H 1.09000 * 109.47245 * 209.99957 * 1 2 3 28 28 H 1.09002 * 109.46824 * 329.99968 * 1 2 3 29 29 H 1.09001 * 109.47424 * 150.00235 * 3 2 1 30 30 H 1.09008 * 109.47009 * 30.00167 * 3 2 1 31 31 H 1.08993 * 109.47194 * 59.99248 * 4 3 2 32 32 H 1.09004 * 109.47045 * 299.99352 * 4 3 2 33 33 H 1.00893 * 111.00041 * 56.04542 * 5 4 3 34 34 H 1.08993 * 109.47369 * 60.00437 * 6 5 4 35 35 H 1.08995 * 109.47239 * 299.99420 * 6 5 4 36 36 H 1.07999 * 125.99396 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.47331 * 269.98046 * 13 12 7 38 38 H 1.08997 * 109.47281 * 29.98539 * 13 12 7 39 39 H 1.09001 * 109.47031 * 149.98510 * 13 12 7 40 40 H 1.08997 * 109.47306 * 300.00097 * 16 14 2 41 41 H 1.09001 * 109.47516 * 60.00055 * 16 14 2 42 42 H 0.96992 * 120.00191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1866 2.9828 -1.4424 6 6 3.4503 3.4384 -2.8139 7 6 4.2036 4.7430 -2.7737 8 7 5.5019 4.8710 -2.7534 9 6 5.8178 6.1745 -2.7196 10 6 4.6702 6.8817 -2.7183 11 17 4.5199 8.6106 -2.6745 12 7 3.6461 5.9741 -2.7525 13 6 2.2134 6.2800 -2.7637 14 6 2.1388 -1.1673 -0.0005 15 8 3.3516 -1.1673 -0.0010 16 6 1.3853 -2.4723 -0.0017 17 16 2.5613 -3.8481 -0.0029 18 6 1.4412 -5.2083 -0.0034 19 1 0.3759 -5.0305 -0.0033 20 6 1.9279 -6.5081 -0.0038 21 7 3.2262 -6.7248 -0.0033 22 14 0.7403 -7.9501 -0.0050 23 1 0.4262 -8.3315 -1.4054 24 1 1.3613 -9.1034 0.6947 25 1 -0.5106 -7.5617 0.6947 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 3.1500 1.1382 0.5138 30 1 1.6085 2.0283 0.5139 31 1 1.5001 1.8407 -1.9562 32 1 3.0416 0.9507 -1.9563 33 1 4.0440 2.9056 -0.9162 34 1 2.5050 3.5803 -3.3377 35 1 4.0468 2.6909 -3.3367 36 1 6.8164 6.5852 -2.6973 37 1 1.8712 6.3798 -3.7938 38 1 1.6660 5.4739 -2.2754 39 1 2.0372 7.2141 -2.2303 40 1 0.7582 -2.5306 0.8880 41 1 0.7589 -2.5295 -0.8919 42 1 3.5663 -7.6332 -0.0040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481209322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:12 Heat of formation + Delta-G solvation = 28.980257 kcal Electronic energy + Delta-G solvation = -24340.435198 eV Core-core repulsion = 20509.217591 eV Total energy + Delta-G solvation = -3831.217607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59335 -39.55149 -37.27498 -36.80345 -35.15482 -34.54141 -32.44016 -31.57684 -29.72632 -28.15425 -27.51961 -26.48561 -25.53268 -24.82634 -22.46587 -21.93618 -20.46258 -19.21428 -17.84140 -17.67862 -16.78008 -16.54733 -16.37026 -15.90751 -15.50591 -15.02617 -14.81605 -14.81078 -14.49451 -14.14071 -13.84010 -13.51197 -13.32997 -13.32064 -13.20597 -12.91338 -12.64295 -12.50982 -12.35060 -12.30814 -12.13474 -11.94982 -11.77988 -11.20313 -11.07516 -11.03389 -10.76767 -10.45094 -10.10890 -9.82008 -9.42330 -9.07745 -8.97434 -8.74813 -8.57193 -8.23992 -6.51582 -6.22636 -3.93533 1.15958 1.34270 2.43238 2.54208 2.88748 3.01341 3.21315 3.24259 3.29163 3.54284 3.82389 4.18240 4.19141 4.25269 4.42168 4.62170 4.74826 4.87717 4.91433 4.99077 5.04767 5.07953 5.11092 5.12562 5.21045 5.37500 5.41890 5.54182 5.62811 5.65253 5.76366 5.84074 5.90011 6.04473 6.10983 6.37995 6.54302 6.64901 6.93745 7.47739 7.52806 7.58381 8.33931 8.51527 9.22568 10.84777 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.031383 B = 0.001577 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.993908 B =17750.519415 C =18256.136635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.122 3.878 4 C 0.043 3.957 5 N -0.685 5.685 6 C 0.143 3.857 7 C 0.233 3.767 8 N -0.474 5.474 9 C 0.009 3.991 10 C 0.009 3.991 11 Cl -0.010 7.010 12 N -0.443 5.443 13 C 0.065 3.935 14 C 0.532 3.468 15 O -0.514 6.514 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.353 0.647 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.181 0.819 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 30.043 -5.551 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.361 5.361 3 C -0.002 4.002 4 C -0.087 4.087 5 N -0.319 5.319 6 C 0.012 3.988 7 C -0.030 4.030 8 N -0.193 5.193 9 C -0.141 4.141 10 C -0.131 4.131 11 Cl 0.018 6.982 12 N -0.127 5.127 13 C -0.077 4.077 14 C 0.320 3.680 15 O -0.387 6.387 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.172 0.828 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.198 0.802 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.802 29.820 -5.477 30.557 hybrid contribution -2.232 -0.463 -0.319 2.302 sum -6.034 29.357 -5.796 30.526 Atomic orbital electron populations 1.21780 0.79505 1.03214 1.01714 1.47817 1.06904 1.05534 1.75844 1.21240 0.98544 0.84761 0.95678 1.22357 0.98607 0.89234 0.98473 1.60488 1.28095 1.30919 1.12351 1.20212 0.98182 0.88629 0.91738 1.23018 0.89133 0.86356 1.04453 1.70448 1.10984 1.18276 1.19576 1.22192 0.97239 0.88316 1.06369 1.21791 0.89678 0.84110 1.17548 1.98383 1.98023 1.04281 1.97471 1.45072 1.07363 1.06030 1.54250 1.22190 0.77154 1.04365 1.03964 1.20392 0.87967 0.84616 0.75023 1.90704 1.13728 1.86785 1.47516 1.23558 1.04568 0.97233 1.04729 1.85415 1.08035 0.93353 1.96707 1.22855 0.94294 0.92213 1.59034 0.90943 1.24991 0.95667 0.98375 0.94525 1.70015 1.11743 1.21683 1.46781 0.86172 0.80264 0.80736 0.78344 1.20277 1.20737 1.19699 0.92836 0.90592 0.91310 0.89840 0.90064 0.90772 0.93687 0.82805 0.89186 0.90973 0.80215 0.90155 0.87992 0.89398 0.89214 0.89270 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.28 59.84 0.62 1.38 16 2 N -0.62 -8.22 2.87 -181.58 -0.52 -8.74 16 3 C 0.12 1.35 5.71 -4.05 -0.02 1.32 16 4 C 0.04 0.43 6.01 -3.82 -0.02 0.41 16 5 N -0.69 -6.07 6.49 -115.06 -0.75 -6.82 16 6 C 0.14 1.18 5.78 -4.97 -0.03 1.15 16 7 C 0.23 2.27 7.42 -155.33 -1.15 1.12 16 8 N -0.47 -5.56 11.25 -10.76 -0.12 -5.69 16 9 C 0.01 0.09 11.86 -17.75 -0.21 -0.12 16 10 C 0.01 0.08 7.49 -16.52 -0.12 -0.04 16 11 Cl -0.01 -0.07 28.93 -51.86 -1.50 -1.57 16 12 N -0.44 -3.63 3.16 -117.77 -0.37 -4.00 16 13 C 0.07 0.30 10.66 59.85 0.64 0.94 16 14 C 0.53 9.80 7.69 -10.99 -0.08 9.71 16 15 O -0.51 -11.45 15.44 5.55 0.09 -11.37 16 16 C -0.15 -2.99 4.71 36.00 0.17 -2.82 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 22 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 28 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 29 H 0.08 1.10 7.42 -51.93 -0.39 0.71 16 30 H 0.08 0.72 7.89 -51.92 -0.41 0.31 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.35 3.54 8.72 -39.30 -0.34 3.20 16 34 H 0.09 0.56 7.71 -51.93 -0.40 0.16 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.41 7.66 -51.93 -0.40 0.01 16 39 H 0.09 0.34 7.92 -51.93 -0.41 -0.07 16 40 H 0.09 1.65 7.40 -51.92 -0.38 1.26 16 41 H 0.09 1.64 8.11 -51.91 -0.42 1.22 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -35.47 387.46 -9.84 -45.31 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.98 Total: -0.21 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.02 Total: 0.22 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -1.03 Total: -50.56 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.50 Total: -1.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.47 -9.84 -45.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481209322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.290 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds