Wall clock time and date at job start Sat Apr 11 2020 07:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46493 * 120.00549 * 2 1 4 4 C 1.52997 * 109.47356 * 270.00468 * 3 2 1 5 5 N 1.46903 * 109.47164 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99508 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46705 * 180.02562 * 6 5 4 8 8 N 1.30471 * 125.64681 * 90.02094 * 7 6 5 9 9 C 1.34162 * 109.27129 * 179.97438 * 8 7 6 10 10 C 1.34794 * 108.01564 * 0.02562 * 9 8 7 11 11 Cl 1.73602 * 126.60058 * 179.74000 * 10 9 8 12 12 N 1.35164 * 125.64330 * 270.02598 * 7 6 5 13 13 C 1.46502 * 126.39816 * 0.03466 * 12 7 6 14 14 C 1.34781 * 119.99678 * 180.02562 * 2 1 3 15 15 O 1.21284 * 119.99896 * 179.97438 * 14 2 1 16 16 C 1.50696 * 120.00066 * 0.02562 * 14 2 1 17 17 S 1.80999 * 109.47339 * 179.97438 * 16 14 2 18 18 C 1.76198 * 100.00434 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99730 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00300 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00056 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99967 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47200 * 89.99925 * 22 20 18 24 24 H 1.48502 * 109.46939 * 209.99673 * 22 20 18 25 25 H 1.48498 * 109.47069 * 329.99862 * 22 20 18 26 26 H 1.08997 * 109.47555 * 89.99693 * 1 2 3 27 27 H 1.09000 * 109.47245 * 209.99957 * 1 2 3 28 28 H 1.09002 * 109.46824 * 329.99968 * 1 2 3 29 29 H 1.09001 * 109.47424 * 150.00235 * 3 2 1 30 30 H 1.09008 * 109.47009 * 30.00167 * 3 2 1 31 31 H 1.08993 * 109.47194 * 59.99248 * 4 3 2 32 32 H 1.09004 * 109.47045 * 299.99352 * 4 3 2 33 33 H 1.00893 * 111.00041 * 56.04542 * 5 4 3 34 34 H 1.08993 * 109.47369 * 60.00437 * 6 5 4 35 35 H 1.08995 * 109.47239 * 299.99420 * 6 5 4 36 36 H 1.07999 * 125.99396 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.47331 * 269.98046 * 13 12 7 38 38 H 1.08997 * 109.47281 * 29.98539 * 13 12 7 39 39 H 1.09001 * 109.47031 * 149.98510 * 13 12 7 40 40 H 1.08997 * 109.47306 * 300.00097 * 16 14 2 41 41 H 1.09001 * 109.47516 * 60.00055 * 16 14 2 42 42 H 0.96992 * 120.00191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1866 2.9828 -1.4424 6 6 3.4503 3.4384 -2.8139 7 6 4.2036 4.7430 -2.7737 8 7 5.5019 4.8710 -2.7534 9 6 5.8178 6.1745 -2.7196 10 6 4.6702 6.8817 -2.7183 11 17 4.5199 8.6106 -2.6745 12 7 3.6461 5.9741 -2.7525 13 6 2.2134 6.2800 -2.7637 14 6 2.1388 -1.1673 -0.0005 15 8 3.3516 -1.1673 -0.0010 16 6 1.3853 -2.4723 -0.0017 17 16 2.5613 -3.8481 -0.0029 18 6 1.4412 -5.2083 -0.0034 19 1 0.3759 -5.0305 -0.0033 20 6 1.9279 -6.5081 -0.0038 21 7 3.2262 -6.7248 -0.0033 22 14 0.7403 -7.9501 -0.0050 23 1 0.4262 -8.3315 -1.4054 24 1 1.3613 -9.1034 0.6947 25 1 -0.5106 -7.5617 0.6947 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 3.1500 1.1382 0.5138 30 1 1.6085 2.0283 0.5139 31 1 1.5001 1.8407 -1.9562 32 1 3.0416 0.9507 -1.9563 33 1 4.0440 2.9056 -0.9162 34 1 2.5050 3.5803 -3.3377 35 1 4.0468 2.6909 -3.3367 36 1 6.8164 6.5852 -2.6973 37 1 1.8712 6.3798 -3.7938 38 1 1.6660 5.4739 -2.2754 39 1 2.0372 7.2141 -2.2303 40 1 0.7582 -2.5306 0.8880 41 1 0.7589 -2.5295 -0.8919 42 1 3.5663 -7.6332 -0.0040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481209322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:11 Heat of formation + Delta-G solvation = 4.097163 kcal Electronic energy + Delta-G solvation = -24341.514210 eV Core-core repulsion = 20509.217591 eV Total energy + Delta-G solvation = -3832.296619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.25867 -40.85810 -37.93618 -37.66617 -36.25805 -35.14163 -34.57919 -32.51795 -30.87230 -29.13609 -28.05572 -27.68492 -27.31735 -25.69743 -23.36340 -22.60870 -21.17189 -20.55652 -19.52476 -18.45196 -18.05448 -17.40041 -17.15634 -16.97154 -16.86887 -16.57956 -15.93472 -15.76773 -15.63266 -15.13672 -14.87545 -14.58273 -14.32084 -14.16000 -14.00288 -13.94704 -13.64448 -13.54554 -13.24524 -13.15705 -13.04540 -12.97760 -12.88658 -12.72681 -12.60736 -12.53366 -12.08111 -11.70311 -11.16612 -11.13660 -10.90581 -10.73220 -10.25431 -9.75974 -9.70865 -9.38600 -8.66892 -8.33937 -6.12437 0.51524 0.67629 1.26680 1.43122 1.46748 1.56388 1.58562 1.80041 1.91063 2.13128 2.28331 3.00262 3.07845 3.28260 3.46331 3.74142 3.76340 3.84762 4.03984 4.15613 4.23625 4.32449 4.34869 4.37774 4.42146 4.49454 4.51231 4.56697 4.65710 4.73753 4.83398 4.95751 5.00628 5.01908 5.40280 5.42257 5.51329 5.75131 5.92997 6.09243 6.20233 6.28380 6.83580 7.07239 7.15910 8.75284 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.031383 B = 0.001577 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.993908 B =17750.519415 C =18256.136635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.609 5.609 3 C 0.121 3.879 4 C 0.056 3.944 5 N -0.674 5.674 6 C 0.147 3.853 7 C 0.224 3.776 8 N -0.514 5.514 9 C -0.013 4.013 10 C 0.010 3.990 11 Cl 0.007 6.993 12 N -0.439 5.439 13 C 0.058 3.942 14 C 0.529 3.471 15 O -0.565 6.565 16 C -0.123 4.123 17 S -0.157 6.157 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.257 1.257 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.011 0.989 33 H 0.344 0.656 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.191 0.809 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 31.618 -5.758 33.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.343 5.343 3 C -0.002 4.002 4 C -0.075 4.075 5 N -0.306 5.306 6 C 0.017 3.983 7 C -0.039 4.039 8 N -0.233 5.233 9 C -0.163 4.163 10 C -0.132 4.132 11 Cl 0.035 6.965 12 N -0.123 5.123 13 C -0.083 4.083 14 C 0.316 3.684 15 O -0.444 6.444 16 C -0.274 4.274 17 S 0.070 5.930 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.180 1.180 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.029 0.971 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.076 0.924 36 H 0.208 0.792 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.561 31.458 -5.691 32.851 hybrid contribution -1.136 -0.731 -0.256 1.375 sum -8.697 30.727 -5.947 32.483 Atomic orbital electron populations 1.22138 0.76513 1.04904 1.03511 1.47795 1.08671 1.04453 1.73381 1.21395 0.97878 0.84291 0.96602 1.22212 0.99198 0.88660 0.97386 1.60539 1.27526 1.29888 1.12643 1.20257 0.99095 0.87704 0.91281 1.23140 0.88877 0.87247 1.04597 1.70385 1.12528 1.19523 1.20909 1.22487 0.98421 0.88131 1.07238 1.21888 0.89680 0.84989 1.16637 1.98388 1.97979 1.02731 1.97372 1.45256 1.08588 1.05299 1.53135 1.22490 0.75109 1.05233 1.05436 1.20190 0.87279 0.85648 0.75262 1.90690 1.15789 1.87520 1.50387 1.23377 1.02657 0.94948 1.06439 1.85624 1.12825 0.97482 1.97035 1.23199 0.94644 0.92600 1.58837 0.89796 1.26140 0.97578 1.01729 0.93739 1.70188 1.14170 1.22447 1.48032 0.84948 0.77915 0.76284 0.78795 1.19304 1.20418 1.18036 0.90913 0.90886 0.87771 0.92536 0.86520 0.88261 0.97100 0.83829 0.86440 0.92418 0.79167 0.88437 0.86881 0.88521 0.87353 0.87370 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.28 127.77 1.31 2.36 16 2 N -0.61 -14.78 2.87 -846.78 -2.43 -17.21 16 3 C 0.12 2.47 5.71 86.38 0.49 2.97 16 4 C 0.06 1.02 6.01 86.30 0.52 1.54 16 5 N -0.67 -11.14 6.49 -517.93 -3.36 -14.50 16 6 C 0.15 2.28 5.78 85.56 0.49 2.77 16 7 C 0.22 4.23 7.42 138.10 1.02 5.26 16 8 N -0.51 -12.31 11.25 -187.94 -2.11 -14.42 16 9 C -0.01 -0.25 11.86 83.55 0.99 0.74 16 10 C 0.01 0.16 7.49 83.11 0.62 0.79 16 11 Cl 0.01 0.09 28.93 -2.72 -0.08 0.01 16 12 N -0.44 -6.52 3.16 -526.50 -1.66 -8.18 16 13 C 0.06 0.38 10.66 127.77 1.36 1.74 16 14 C 0.53 19.40 7.69 87.65 0.67 20.08 16 15 O -0.57 -26.28 15.44 -3.04 -0.05 -26.33 16 16 C -0.12 -4.83 4.71 71.23 0.34 -4.49 16 17 S -0.16 -8.73 20.57 -56.49 -1.16 -9.89 16 18 C -0.55 -30.96 9.50 67.95 0.65 -30.31 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 22 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.16 6.44 -2.39 -0.02 1.15 16 28 H 0.10 0.88 7.89 -2.39 -0.02 0.86 16 29 H 0.06 1.50 7.42 -2.39 -0.02 1.48 16 30 H 0.12 1.61 7.89 -2.38 -0.02 1.59 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.34 6.94 8.72 -89.70 -0.78 6.16 16 34 H 0.12 1.14 7.71 -2.39 -0.02 1.13 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.11 0.51 7.66 -2.39 -0.02 0.49 16 39 H 0.10 0.49 7.92 -2.39 -0.02 0.47 16 40 H 0.11 3.82 7.40 -2.40 -0.02 3.81 16 41 H 0.11 3.81 8.11 -2.40 -0.02 3.79 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.53 387.46 0.66 -80.87 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.26 Total: 15.59 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 8.94 Total: 4.62 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -9.28 Total: -110.18 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -0.08 Total: 0.01 kcal Total: -81.53 0.66 -80.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481209322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.969 kcal (2) G-P(sol) polarization free energy of solvation -81.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds