Wall clock time and date at job start Sat Apr 11 2020 07:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99929 * 2 1 4 4 C 1.52996 * 109.47701 * 270.00633 * 3 2 1 5 5 H 1.09002 * 109.46937 * 305.00166 * 4 3 2 6 6 O 1.42900 * 109.47346 * 64.99690 * 4 3 2 7 7 C 1.52995 * 109.47378 * 185.00064 * 4 3 2 8 8 N 1.46506 * 109.47360 * 179.97438 * 7 4 3 9 9 C 1.36931 * 119.99980 * 179.72454 * 8 7 4 10 10 H 1.08002 * 120.00460 * 0.27712 * 9 8 7 11 11 C 1.38814 * 119.99866 * 180.27600 * 9 8 7 12 12 N 1.31618 * 119.99825 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46860 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47438 * 119.99644 * 13 11 9 16 16 H 1.48500 * 109.47115 * 239.99796 * 13 11 9 17 17 C 1.34776 * 120.00131 * 180.02562 * 2 1 3 18 18 O 1.21610 * 120.00289 * 181.55809 * 17 2 1 19 19 C 1.47382 * 119.99673 * 1.56138 * 17 2 1 20 20 C 1.36419 * 127.18485 * 188.52701 * 19 17 2 21 21 O 1.33653 * 108.39140 * 179.83410 * 20 19 17 22 22 C 1.34220 * 110.90850 * 0.44930 * 21 20 19 23 23 S 1.76204 * 125.43546 * 179.72251 * 22 21 20 24 24 C 1.81397 * 104.45145 * 270.00102 * 23 22 21 25 25 O 1.42092 * 104.27841 * 26.07579 * 23 22 21 26 26 O 1.42107 * 104.27462 * 153.93278 * 23 22 21 27 27 C 1.34170 * 109.12312 * 359.72566 * 22 21 20 28 28 H 1.09004 * 109.47153 * 95.58624 * 1 2 3 29 29 H 1.08998 * 109.47005 * 215.58790 * 1 2 3 30 30 H 1.08997 * 109.46930 * 335.58493 * 1 2 3 31 31 H 1.09002 * 109.47047 * 150.00452 * 3 2 1 32 32 H 1.09006 * 109.47001 * 30.00678 * 3 2 1 33 33 H 0.96709 * 113.99459 * 60.00416 * 6 4 3 34 34 H 1.09004 * 109.47556 * 59.99783 * 7 4 3 35 35 H 1.09002 * 109.47169 * 299.99959 * 7 4 3 36 36 H 0.96998 * 119.99454 * 359.97438 * 8 7 4 37 37 H 0.97004 * 119.99946 * 179.97438 * 12 11 9 38 38 H 1.07999 * 125.80558 * 359.97438 * 20 19 17 39 39 H 1.09003 * 109.46772 * 59.99905 * 24 23 22 40 40 H 1.08999 * 109.47463 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46965 * 300.00508 * 24 23 22 42 42 H 1.08000 * 127.02125 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 1 2.9641 0.9133 -1.9816 6 8 1.2059 1.9937 -2.0813 7 6 3.3237 2.9682 -1.4442 8 7 3.5683 3.3910 -2.8254 9 6 4.3242 4.5047 -3.0768 10 1 4.7438 5.0690 -2.2571 11 6 4.5512 4.9086 -4.3854 12 7 4.0402 4.2206 -5.3844 13 14 5.5829 6.4275 -4.7285 14 1 6.0380 7.0173 -3.4438 15 1 6.7637 6.0496 -5.5459 16 1 4.7669 7.4234 -5.4684 17 6 2.1389 -1.1672 -0.0005 18 8 3.3547 -1.1674 0.0281 19 6 1.4024 -2.4433 -0.0359 20 6 1.9172 -3.6970 0.1198 21 8 0.9171 -4.5784 0.0236 22 6 -0.2503 -3.9556 -0.2014 23 16 -1.8107 -4.7500 -0.3983 24 6 -1.9369 -5.0648 -2.1803 25 8 -1.6748 -5.9712 0.3154 26 8 -2.7568 -3.7684 0.0028 27 6 -0.0394 -2.6316 -0.2526 28 1 -0.3634 -0.1000 -1.0228 29 1 -0.3633 -0.8357 0.5980 30 1 -0.3633 0.9358 0.4248 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5140 33 1 0.6954 2.6952 -1.6540 34 1 4.2745 2.7523 -0.9569 35 1 2.8120 3.7655 -0.9050 36 1 3.1917 2.8840 -3.5616 37 1 4.1985 4.5030 -6.2988 38 1 2.9558 -3.9364 0.2938 39 1 -1.1121 -5.7040 -2.4956 40 1 -2.8837 -5.5599 -2.3957 41 1 -1.8906 -4.1191 -2.7204 42 1 -0.7781 -1.8614 -0.4187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486280697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:22 Heat of formation + Delta-G solvation = -94.180085 kcal Electronic energy + Delta-G solvation = -28065.215212 eV Core-core repulsion = 23755.655055 eV Total energy + Delta-G solvation = -4309.560156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.112 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.13263 -39.95765 -37.72914 -37.50567 -36.58075 -35.51580 -34.04116 -33.54501 -31.35567 -30.81878 -30.03908 -29.56337 -27.17389 -25.94071 -23.65273 -22.93976 -22.33808 -21.27369 -20.77357 -19.11214 -18.18179 -17.30065 -17.16988 -17.08578 -16.80054 -16.43833 -16.34249 -16.17292 -15.90695 -15.15679 -14.95614 -14.45911 -14.26545 -13.90429 -13.80484 -13.77931 -13.57571 -13.40343 -13.16074 -12.95823 -12.72170 -12.62421 -12.49068 -12.32114 -12.15255 -11.86737 -11.62710 -11.50079 -10.95016 -10.84327 -10.73345 -10.50487 -10.25062 -10.13851 -9.84901 -9.71868 -9.68966 -8.90583 -8.61943 -6.92413 -5.75345 -3.04777 -0.67483 0.63855 1.11835 1.93543 2.49691 2.77116 3.00502 3.22775 3.43195 3.48363 3.50972 3.66700 4.15778 4.17509 4.21873 4.35400 4.40260 4.55234 4.70466 4.77148 4.82907 5.00260 5.08439 5.12414 5.19598 5.26220 5.46935 5.49179 5.55327 5.63958 5.72074 5.94804 6.14930 6.21849 6.35890 6.52613 6.71716 7.13570 7.68948 7.93842 7.99714 8.42832 9.54373 10.12116 10.47986 11.47147 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.002070 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.697872 B =13522.321148 C =13860.834356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.597 5.597 3 C 0.087 3.913 4 C 0.086 3.914 5 H 0.100 0.900 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.586 3.414 18 O -0.535 6.535 19 C -0.250 4.250 20 C 0.095 3.905 21 O -0.120 6.120 22 C -0.569 4.569 23 S 2.530 3.470 24 C -0.643 4.643 25 O -0.920 6.920 26 O -0.916 6.916 27 C -0.075 4.075 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.367 0.633 34 H 0.028 0.972 35 H 0.020 0.980 36 H 0.389 0.611 37 H 0.254 0.746 38 H 0.231 0.769 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 -20.283 11.856 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.328 5.328 3 C -0.036 4.036 4 C 0.026 3.974 5 H 0.118 0.882 6 O -0.355 6.355 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.375 3.625 18 O -0.413 6.413 19 C -0.255 4.255 20 C 0.020 3.980 21 O -0.013 6.013 22 C -0.696 4.696 23 S 2.703 3.297 24 C -0.795 4.795 25 O -0.917 6.917 26 O -0.913 6.913 27 C -0.095 4.095 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.214 0.786 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.223 0.777 37 H 0.064 0.936 38 H 0.247 0.753 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.682 -21.072 12.191 28.429 hybrid contribution 0.985 1.785 -0.729 2.165 sum -13.697 -19.287 11.462 26.286 Atomic orbital electron populations 1.22489 0.79560 1.03652 1.02414 1.47465 1.07085 1.05639 1.72607 1.22340 0.98529 0.83973 0.98788 1.22545 0.85245 0.98221 0.91404 0.88227 1.86611 1.32299 1.59070 1.57476 1.21214 0.96367 0.92869 0.89779 1.42245 1.61993 1.32019 1.00763 1.19268 1.23761 1.02387 0.91858 0.91193 1.24769 1.01223 0.99426 0.95586 1.69696 1.49230 1.40694 0.98216 0.86107 0.79669 0.82576 0.77762 1.20565 1.21834 1.21849 1.17123 0.86412 0.82411 0.76586 1.90843 1.12813 1.87100 1.50576 1.21661 0.93506 0.95081 1.15260 1.25029 0.93604 0.86712 0.92642 1.83966 1.13466 1.35773 1.68113 1.35354 1.07428 1.03895 1.22943 1.05026 0.71953 0.74375 0.78357 1.30189 1.12549 1.13074 1.23658 1.93614 1.84703 1.44343 1.69077 1.93659 1.55863 1.61077 1.80720 1.23925 0.96033 0.95231 0.94328 0.91267 0.90362 0.90386 0.88571 0.89798 0.78647 0.95474 0.96225 0.77685 0.93559 0.75329 0.84388 0.84182 0.84371 0.79148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.36 59.85 0.50 1.02 16 2 N -0.60 -7.10 2.84 -182.86 -0.52 -7.62 16 3 C 0.09 1.10 5.12 -4.04 -0.02 1.08 16 4 C 0.09 1.42 3.30 -26.74 -0.09 1.33 16 5 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 6 O -0.55 -8.84 12.64 -35.23 -0.45 -9.28 16 7 C 0.13 2.52 5.92 -4.04 -0.02 2.50 16 8 N -0.73 -18.87 5.49 -59.91 -0.33 -19.20 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 13 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 C 0.59 7.95 7.67 -12.54 -0.10 7.85 16 18 O -0.53 -9.00 16.50 5.27 0.09 -8.92 16 19 C -0.25 -2.71 6.08 -103.28 -0.63 -3.33 16 20 C 0.09 0.85 11.91 30.08 0.36 1.21 16 21 O -0.12 -1.08 10.52 7.64 0.08 -1.00 16 22 C -0.57 -4.55 6.94 29.30 0.20 -4.34 16 23 S 2.53 14.88 5.94 -107.50 -0.64 14.24 16 24 C -0.64 -1.30 10.80 101.05 1.09 -0.21 16 25 O -0.92 -8.71 17.95 -58.50 -1.05 -9.76 16 26 O -0.92 -7.63 17.69 -57.54 -1.02 -8.64 16 27 C -0.08 -0.65 8.48 -37.46 -0.32 -0.96 16 28 H 0.07 0.57 7.63 -51.93 -0.40 0.17 16 29 H 0.08 0.56 4.89 -51.93 -0.25 0.31 16 30 H 0.08 0.52 7.83 -51.93 -0.41 0.11 16 31 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 32 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 33 H 0.37 4.63 9.05 45.56 0.41 5.04 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.39 10.91 7.54 -40.82 -0.31 10.60 16 37 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.23 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.14 0.15 8.14 -51.92 -0.42 -0.27 16 40 H 0.14 0.03 8.14 -51.92 -0.42 -0.39 16 41 H 0.14 0.13 8.14 -51.92 -0.42 -0.29 16 42 H 0.19 1.22 4.88 -52.49 -0.26 0.97 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -41.28 373.70 -6.27 -47.56 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.51 Total: 8.83 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.73 Total: -1.41 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.12 Total: -54.89 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -2.35 Total: -37.60 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 16 Polarization: 14.88 SS G_CDS: -0.64 Total: 14.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.28 -6.27 -47.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486280697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.622 kcal (2) G-P(sol) polarization free energy of solvation -41.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds