Wall clock time and date at job start Sat Apr 11 2020 07:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99929 * 2 1 4 4 C 1.52996 * 109.47701 * 270.00633 * 3 2 1 5 5 H 1.09002 * 109.46937 * 305.00166 * 4 3 2 6 6 O 1.42900 * 109.47346 * 64.99690 * 4 3 2 7 7 C 1.52995 * 109.47378 * 185.00064 * 4 3 2 8 8 N 1.46506 * 109.47360 * 179.97438 * 7 4 3 9 9 C 1.36931 * 119.99980 * 179.72454 * 8 7 4 10 10 H 1.08002 * 120.00460 * 0.27712 * 9 8 7 11 11 C 1.38814 * 119.99866 * 180.27600 * 9 8 7 12 12 N 1.31618 * 119.99825 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46860 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47438 * 119.99644 * 13 11 9 16 16 H 1.48500 * 109.47115 * 239.99796 * 13 11 9 17 17 C 1.34776 * 120.00131 * 180.02562 * 2 1 3 18 18 O 1.21610 * 120.00289 * 181.55809 * 17 2 1 19 19 C 1.47382 * 119.99673 * 1.56138 * 17 2 1 20 20 C 1.36419 * 127.18485 * 188.52701 * 19 17 2 21 21 O 1.33653 * 108.39140 * 179.83410 * 20 19 17 22 22 C 1.34220 * 110.90850 * 0.44930 * 21 20 19 23 23 S 1.76204 * 125.43546 * 179.72251 * 22 21 20 24 24 C 1.81397 * 104.45145 * 270.00102 * 23 22 21 25 25 O 1.42092 * 104.27841 * 26.07579 * 23 22 21 26 26 O 1.42107 * 104.27462 * 153.93278 * 23 22 21 27 27 C 1.34170 * 109.12312 * 359.72566 * 22 21 20 28 28 H 1.09004 * 109.47153 * 95.58624 * 1 2 3 29 29 H 1.08998 * 109.47005 * 215.58790 * 1 2 3 30 30 H 1.08997 * 109.46930 * 335.58493 * 1 2 3 31 31 H 1.09002 * 109.47047 * 150.00452 * 3 2 1 32 32 H 1.09006 * 109.47001 * 30.00678 * 3 2 1 33 33 H 0.96709 * 113.99459 * 60.00416 * 6 4 3 34 34 H 1.09004 * 109.47556 * 59.99783 * 7 4 3 35 35 H 1.09002 * 109.47169 * 299.99959 * 7 4 3 36 36 H 0.96998 * 119.99454 * 359.97438 * 8 7 4 37 37 H 0.97004 * 119.99946 * 179.97438 * 12 11 9 38 38 H 1.07999 * 125.80558 * 359.97438 * 20 19 17 39 39 H 1.09003 * 109.46772 * 59.99905 * 24 23 22 40 40 H 1.08999 * 109.47463 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46965 * 300.00508 * 24 23 22 42 42 H 1.08000 * 127.02125 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 1 2.9641 0.9133 -1.9816 6 8 1.2059 1.9937 -2.0813 7 6 3.3237 2.9682 -1.4442 8 7 3.5683 3.3910 -2.8254 9 6 4.3242 4.5047 -3.0768 10 1 4.7438 5.0690 -2.2571 11 6 4.5512 4.9086 -4.3854 12 7 4.0402 4.2206 -5.3844 13 14 5.5829 6.4275 -4.7285 14 1 6.0380 7.0173 -3.4438 15 1 6.7637 6.0496 -5.5459 16 1 4.7669 7.4234 -5.4684 17 6 2.1389 -1.1672 -0.0005 18 8 3.3547 -1.1674 0.0281 19 6 1.4024 -2.4433 -0.0359 20 6 1.9172 -3.6970 0.1198 21 8 0.9171 -4.5784 0.0236 22 6 -0.2503 -3.9556 -0.2014 23 16 -1.8107 -4.7500 -0.3983 24 6 -1.9369 -5.0648 -2.1803 25 8 -1.6748 -5.9712 0.3154 26 8 -2.7568 -3.7684 0.0028 27 6 -0.0394 -2.6316 -0.2526 28 1 -0.3634 -0.1000 -1.0228 29 1 -0.3633 -0.8357 0.5980 30 1 -0.3633 0.9358 0.4248 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5140 33 1 0.6954 2.6952 -1.6540 34 1 4.2745 2.7523 -0.9569 35 1 2.8120 3.7655 -0.9050 36 1 3.1917 2.8840 -3.5616 37 1 4.1985 4.5030 -6.2988 38 1 2.9558 -3.9364 0.2938 39 1 -1.1121 -5.7040 -2.4956 40 1 -2.8837 -5.5599 -2.3957 41 1 -1.8906 -4.1191 -2.7204 42 1 -0.7781 -1.8614 -0.4187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486280697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:21 Heat of formation + Delta-G solvation = -86.434229 kcal Electronic energy + Delta-G solvation = -28064.879326 eV Core-core repulsion = 23755.655055 eV Total energy + Delta-G solvation = -4309.224271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.112 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.04186 -40.90677 -40.15848 -38.43137 -36.31886 -35.86000 -34.90276 -33.75838 -33.09809 -31.80148 -29.46357 -29.36937 -28.02300 -27.59150 -26.47623 -23.87701 -22.76779 -21.94538 -21.63304 -20.02533 -19.04860 -18.58124 -18.19076 -17.50050 -17.25565 -17.12706 -16.82428 -16.47480 -16.29923 -16.07636 -15.71294 -15.42084 -15.11712 -14.85684 -14.64493 -14.55865 -14.41241 -14.16059 -13.99306 -13.91173 -13.74872 -13.65216 -12.81657 -12.68943 -12.50574 -12.36458 -12.31805 -12.18171 -12.13523 -11.74862 -11.58830 -11.46581 -10.96911 -10.89760 -10.53305 -10.41841 -9.87613 -9.73221 -9.57037 -9.14626 -8.52852 -4.06834 -1.67502 0.55821 0.77186 0.88731 1.23691 1.66529 1.88275 2.09725 2.11092 2.12614 2.67724 2.77337 3.14590 3.28839 3.29756 3.39210 3.71533 3.89985 3.99867 4.06198 4.28945 4.35487 4.40332 4.46008 4.69287 4.71032 4.75816 4.81019 4.87561 5.00928 5.04974 5.16218 5.18765 5.21330 5.51815 5.65510 5.74669 5.85522 5.90977 6.10586 6.27024 6.29621 6.72450 6.78649 7.26340 7.56319 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.002070 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.697872 B =13522.321148 C =13860.834356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.595 5.595 3 C 0.078 3.922 4 C 0.068 3.932 5 H 0.078 0.922 6 O -0.571 6.571 7 C 0.038 3.962 8 N -0.524 5.524 9 C 0.384 3.616 10 H 0.293 0.707 11 C -0.091 4.091 12 N -0.558 5.558 13 Si 1.037 2.963 14 H -0.181 1.181 15 H -0.269 1.269 16 H -0.265 1.265 17 C 0.604 3.396 18 O -0.582 6.582 19 C -0.259 4.259 20 C -0.092 4.092 21 O -0.197 6.197 22 C -0.397 4.397 23 S 1.803 4.197 24 C -0.683 4.683 25 O -1.145 7.145 26 O -1.147 7.147 27 C -0.294 4.294 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.397 0.603 34 H 0.167 0.833 35 H 0.184 0.816 36 H 0.435 0.565 37 H 0.378 0.622 38 H 0.202 0.798 39 H 0.019 0.981 40 H -0.007 1.007 41 H 0.030 0.970 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.493 67.393 -15.073 79.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.326 5.326 3 C -0.044 4.044 4 C 0.007 3.993 5 H 0.096 0.904 6 O -0.380 6.380 7 C -0.083 4.083 8 N -0.112 5.112 9 C 0.200 3.800 10 H 0.308 0.692 11 C -0.327 4.327 12 N -0.183 5.183 13 Si 0.849 3.151 14 H -0.101 1.101 15 H -0.194 1.194 16 H -0.189 1.189 17 C 0.397 3.603 18 O -0.466 6.466 19 C -0.264 4.264 20 C -0.167 4.167 21 O -0.097 6.097 22 C -0.528 4.528 23 S 1.960 4.040 24 C -0.797 4.797 25 O -1.143 7.143 26 O -1.145 7.145 27 C -0.326 4.326 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.248 0.752 34 H 0.184 0.816 35 H 0.201 0.799 36 H 0.276 0.724 37 H 0.197 0.803 38 H 0.219 0.781 39 H 0.039 0.961 40 H 0.013 0.987 41 H 0.049 0.951 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 38.210 65.838 -15.084 77.603 hybrid contribution -0.914 -0.769 -1.483 1.904 sum 37.296 65.068 -16.567 76.807 Atomic orbital electron populations 1.22370 0.78675 1.04122 1.01802 1.47312 1.07344 1.05143 1.72812 1.22480 1.00035 0.84858 0.97019 1.22627 0.85491 0.96683 0.94460 0.90435 1.86808 1.32827 1.61945 1.56394 1.23809 1.06152 0.99445 0.78861 1.47395 1.29882 1.19121 1.14762 1.27103 0.73527 0.79334 1.00046 0.69156 1.28958 1.02452 1.07535 0.93777 1.69740 1.11139 1.28854 1.08549 0.84092 0.75619 0.70278 0.85093 1.10086 1.19419 1.18947 1.17234 0.85553 0.83335 0.74223 1.90553 1.13460 1.88277 1.54291 1.21553 0.94537 0.94221 1.16050 1.24659 0.95133 0.89194 1.07689 1.84153 1.16087 1.38907 1.70543 1.40076 1.03876 1.04630 1.04218 1.67327 0.78932 0.72113 0.85630 1.29958 0.95394 0.98525 1.55828 1.92248 1.87026 1.55077 1.79923 1.92241 1.71156 1.63438 1.87641 1.22443 0.92950 0.95322 1.21923 0.93591 0.93023 0.86618 0.87998 0.84727 0.75188 0.81573 0.79929 0.72384 0.80251 0.78131 0.96140 0.98740 0.95089 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.50 8.36 127.77 1.07 3.57 16 2 N -0.60 -17.90 2.84 -850.71 -2.41 -20.32 16 3 C 0.08 0.64 5.12 86.38 0.44 1.09 16 4 C 0.07 -0.03 3.30 30.59 0.10 0.07 16 5 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 6 O -0.57 -1.70 12.64 -148.98 -1.88 -3.58 16 7 C 0.04 -0.81 5.92 86.38 0.51 -0.30 16 8 N -0.52 12.17 5.49 -343.44 -1.89 10.28 16 9 C 0.38 -12.31 9.99 84.03 0.84 -11.47 16 10 H 0.29 -13.60 7.83 -2.91 -0.02 -13.62 16 11 C -0.09 2.29 5.50 84.86 0.47 2.76 16 12 N -0.56 9.23 13.06 21.65 0.28 9.51 16 13 Si 1.04 -24.18 29.55 68.60 2.03 -22.15 16 14 H -0.18 5.07 7.11 99.48 0.71 5.78 16 15 H -0.27 4.30 7.11 99.48 0.71 5.01 16 16 H -0.27 4.45 7.11 99.48 0.71 5.15 16 17 C 0.60 27.03 7.67 86.65 0.66 27.69 16 18 O -0.58 -24.90 16.50 -4.06 -0.07 -24.96 16 19 C -0.26 -15.88 6.08 -18.99 -0.12 -15.99 16 20 C -0.09 -6.02 11.91 67.40 0.80 -5.21 16 21 O -0.20 -15.76 10.52 4.41 0.05 -15.72 16 22 C -0.40 -33.63 6.94 66.89 0.46 -33.16 16 23 S 1.80 170.09 5.94 -56.49 -0.34 169.75 16 24 C -0.68 -59.61 10.80 113.37 1.22 -58.39 16 25 O -1.14 -116.70 17.95 -126.73 -2.27 -118.98 16 26 O -1.15 -111.90 17.69 -127.65 -2.26 -114.16 16 27 C -0.29 -21.30 8.48 23.64 0.20 -21.10 16 28 H 0.05 1.73 7.63 -2.39 -0.02 1.71 16 29 H 0.05 2.51 4.89 -2.39 -0.01 2.50 16 30 H 0.12 2.37 7.83 -2.39 -0.02 2.35 16 31 H 0.10 0.80 7.40 -2.39 -0.02 0.78 16 32 H 0.13 -0.24 7.86 -2.38 -0.02 -0.26 16 33 H 0.40 -2.80 9.05 -74.05 -0.67 -3.47 16 34 H 0.17 -4.27 8.14 -2.39 -0.02 -4.29 16 35 H 0.18 -5.65 8.14 -2.39 -0.02 -5.67 16 36 H 0.44 -6.99 7.54 -92.71 -0.70 -7.69 16 37 H 0.38 -6.41 8.31 -92.71 -0.77 -7.18 16 38 H 0.20 10.99 8.06 -2.91 -0.02 10.96 16 39 H 0.02 1.67 8.14 -2.39 -0.02 1.65 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.03 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.14 9.57 4.88 -2.91 -0.01 9.56 16 Total: -1.00 -232.58 373.70 -2.37 -234.95 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -0.28 Total: 5.84 kcal Atomic # 6 Polarization: -117.14 SS G_CDS: 6.67 Total: -110.47 kcal Atomic # 7 Polarization: 3.49 SS G_CDS: -4.02 Total: -0.53 kcal Atomic # 8 Polarization: -270.96 SS G_CDS: -6.44 Total: -277.39 kcal Atomic # 14 Polarization: -24.18 SS G_CDS: 2.03 Total: -22.15 kcal Atomic # 16 Polarization: 170.09 SS G_CDS: -0.34 Total: 169.75 kcal Total: -232.58 -2.37 -234.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486280697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.515 kcal (2) G-P(sol) polarization free energy of solvation -232.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -234.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds