Wall clock time and date at job start Sat Apr 11 2020 07:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48505 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47132 * 299.99416 * 3 2 1 6 6 H 1.48500 * 109.47387 * 59.99571 * 3 2 1 7 7 C 1.38815 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99486 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99886 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.51235 * 60.10502 * 11 10 9 13 13 C 1.53714 * 109.48305 * 180.36241 * 11 10 9 14 14 N 1.47159 * 108.15881 * 172.39834 * 13 11 10 15 15 C 1.34780 * 120.97915 * 129.43390 * 14 13 11 16 16 O 1.21578 * 120.00000 * 3.53752 * 15 14 13 17 17 C 1.47625 * 119.99879 * 183.54047 * 15 14 13 18 18 C 1.40237 * 119.94938 * 130.88380 * 17 15 14 19 19 C 1.36015 * 120.19441 * 180.25777 * 18 17 15 20 20 C 1.40116 * 120.66175 * 359.52627 * 19 18 17 21 21 S 1.75964 * 130.37140 * 180.16683 * 20 19 18 22 22 C 1.75277 * 92.22855 * 180.28249 * 21 20 19 23 23 C 1.31739 * 111.46764 * 359.97438 * 22 21 20 24 24 C 1.39970 * 120.02495 * 0.47068 * 20 19 18 25 25 C 1.38647 * 119.94506 * 310.89916 * 17 15 14 26 26 C 1.47149 * 118.03863 * 309.16096 * 14 13 11 27 27 C 1.53296 * 108.38382 * 50.78459 * 26 14 13 28 28 O 1.42959 * 109.51300 * 300.00308 * 11 10 9 29 29 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00467 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46810 * 60.00488 * 10 9 7 32 32 H 1.08998 * 109.47307 * 300.00010 * 10 9 7 33 33 H 1.09000 * 109.83618 * 52.72728 * 13 11 10 34 34 H 1.08995 * 109.75101 * 292.02475 * 13 11 10 35 35 H 1.07995 * 119.90226 * 0.03793 * 18 17 15 36 36 H 1.07995 * 119.67463 * 179.73414 * 19 18 17 37 37 H 1.08000 * 124.27032 * 180.02562 * 22 21 20 38 38 H 1.08005 * 122.55500 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.96393 * 0.02562 * 25 17 15 40 40 H 1.08995 * 109.68512 * 170.50900 * 26 14 13 41 41 H 1.09000 * 109.68099 * 291.03031 * 26 14 13 42 42 H 1.08998 * 109.51310 * 67.62062 * 27 26 14 43 43 H 1.08999 * 109.51064 * 187.77405 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.4377 -4.7639 -0.8882 13 6 1.8322 -6.1510 0.0114 14 7 0.8602 -7.2402 0.1968 15 6 0.8487 -8.3074 -0.6263 16 8 1.6896 -8.4117 -1.4982 17 6 -0.1850 -9.3496 -0.4693 18 6 -0.9083 -9.7922 -1.5863 19 6 -1.8654 -10.7484 -1.4464 20 6 -2.1358 -11.3108 -0.1919 21 16 -3.2964 -12.5476 0.2766 22 6 -2.8086 -12.4653 1.9582 23 6 -1.8516 -11.5784 2.1397 24 6 -1.4250 -10.8827 0.9354 25 6 -0.4395 -9.8890 0.7823 26 6 -0.0949 -7.1328 1.3111 27 6 -0.7657 -5.7561 1.2418 28 8 0.2419 -4.7445 1.1695 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 2.6854 -3.7141 0.8912 32 1 2.6841 -3.7149 -0.8888 33 1 2.5513 -6.1575 0.8305 34 1 2.3537 -6.2819 -0.9367 35 1 -0.7071 -9.3701 -2.5597 36 1 -2.4203 -11.0800 -2.3115 37 1 -3.2379 -13.0665 2.7460 38 1 -1.4176 -11.3819 3.1090 39 1 0.1185 -9.5459 1.6411 40 1 -0.8500 -7.9139 1.2240 41 1 0.4335 -7.2369 2.2588 42 1 -1.3985 -5.7036 0.3559 43 1 -1.3731 -5.6019 2.1336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502085294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:33 Heat of formation + Delta-G solvation = -3.358508 kcal Electronic energy + Delta-G solvation = -27153.243003 eV Core-core repulsion = 23290.763180 eV Total energy + Delta-G solvation = -3862.479823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93535 -39.50228 -38.24051 -35.57995 -35.12299 -34.41004 -32.42531 -31.55342 -30.10279 -29.94104 -28.14770 -25.96354 -24.45256 -23.77509 -23.23862 -22.53897 -21.46860 -20.74835 -19.42400 -18.40353 -17.59661 -17.04837 -16.74083 -16.41092 -16.04332 -15.63866 -15.29797 -15.16895 -14.74624 -14.54192 -14.21782 -14.14676 -14.08824 -14.03226 -13.29871 -13.21206 -13.11725 -12.71911 -12.53484 -12.44213 -12.23954 -11.72126 -11.64353 -11.57183 -11.22545 -11.01496 -10.89364 -10.80241 -10.52728 -10.21460 -10.07221 -9.91721 -9.86158 -9.67264 -9.05027 -8.86020 -8.60389 -8.18847 -6.87892 -5.71842 -3.00458 0.24529 0.45971 1.03433 1.50278 1.79328 2.41410 2.66795 3.24314 3.46420 3.51733 3.54201 3.93569 3.96840 4.22999 4.25577 4.57897 4.66461 4.68075 4.72748 4.87234 4.88783 5.04906 5.07799 5.13568 5.21740 5.28452 5.37250 5.43197 5.53077 5.60798 5.63040 5.69534 5.73214 5.83291 5.86893 5.89582 5.94490 6.20560 6.27251 6.29768 6.56102 6.69576 7.12611 7.44890 7.73543 7.88977 8.46295 9.58131 10.15326 10.51337 11.51029 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.025000 B = 0.002045 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.721801 B =13688.917284 C =14050.328378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.086 3.914 14 N -0.605 5.605 15 C 0.562 3.438 16 O -0.530 6.530 17 C -0.119 4.119 18 C -0.055 4.055 19 C -0.085 4.085 20 C -0.124 4.124 21 S 0.090 5.910 22 C -0.192 4.192 23 C -0.113 4.113 24 C -0.084 4.084 25 C -0.047 4.047 26 C 0.061 3.939 27 C 0.046 3.954 28 O -0.356 6.356 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 -29.115 3.593 30.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.338 5.338 15 C 0.350 3.650 16 O -0.407 6.407 17 C -0.124 4.124 18 C -0.077 4.077 19 C -0.107 4.107 20 C -0.239 4.239 21 S 0.353 5.647 22 C -0.326 4.326 23 C -0.143 4.143 24 C -0.092 4.092 25 C -0.067 4.067 26 C -0.062 4.062 27 C -0.032 4.032 28 O -0.274 6.274 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.187 0.813 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.941 -29.815 2.578 30.962 hybrid contribution 0.992 1.456 0.756 1.917 sum -6.948 -28.359 3.334 29.388 Atomic orbital electron populations 1.69690 1.05107 1.25432 1.57804 1.24751 0.95539 0.97687 1.03102 0.86104 0.78769 0.84104 0.77132 1.20546 1.21920 1.21896 1.19275 0.91052 0.84073 1.42517 0.91074 1.42217 1.06074 0.99446 1.89303 1.20630 0.92353 0.84696 0.98826 1.22889 0.92942 0.94110 0.88567 0.91822 1.22493 0.91355 0.85433 1.04393 1.48099 1.34964 1.20573 1.30213 1.18223 0.84306 0.81316 0.81156 1.90816 1.38766 1.77060 1.34062 1.19689 0.98962 0.99418 0.94320 1.20757 0.93458 0.95167 0.98285 1.20149 0.98694 0.96950 0.94923 1.22968 1.01438 1.01946 0.97595 1.84265 1.39510 1.39322 1.01571 1.25063 1.02933 1.04585 0.99983 1.20959 0.98220 0.96866 0.98223 1.19210 0.98702 0.99071 0.92218 1.21170 0.95153 0.93942 0.96446 1.22846 0.93273 1.00236 0.89816 1.22919 0.90893 0.86474 1.02914 1.88172 1.45985 1.50519 1.42679 0.93625 0.77824 0.95326 0.94640 0.90119 0.87885 0.84231 0.84764 0.81263 0.83313 0.84513 0.88395 0.90095 0.92764 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.97 5.49 -59.91 -0.33 -19.30 16 10 C 0.16 3.34 5.96 -4.04 -0.02 3.32 16 11 C 0.07 1.25 2.88 -26.36 -0.08 1.18 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 13 C 0.09 1.22 5.94 -3.31 -0.02 1.20 16 14 N -0.61 -7.69 3.01 -173.21 -0.52 -8.22 16 15 C 0.56 7.56 7.24 -12.43 -0.09 7.47 16 16 O -0.53 -8.90 16.51 5.30 0.09 -8.81 16 17 C -0.12 -1.28 5.04 -105.16 -0.53 -1.81 16 18 C -0.05 -0.54 9.65 -39.63 -0.38 -0.92 16 19 C -0.08 -0.72 9.99 -39.68 -0.40 -1.12 16 20 C -0.12 -1.09 6.49 -38.23 -0.25 -1.34 16 21 S 0.09 0.63 23.23 -107.50 -2.50 -1.87 16 22 C -0.19 -1.15 11.01 28.85 0.32 -0.83 16 23 C -0.11 -0.75 10.39 -38.58 -0.40 -1.15 16 24 C -0.08 -0.72 6.03 -105.40 -0.64 -1.36 16 25 C -0.05 -0.42 7.42 -38.47 -0.29 -0.70 16 26 C 0.06 0.62 5.41 -3.53 -0.02 0.61 16 27 C 0.05 0.58 6.98 37.31 0.26 0.84 16 28 O -0.36 -6.17 10.13 -35.23 -0.36 -6.53 16 29 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.39 10.79 7.54 -40.82 -0.31 10.48 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.14 1.00 6.91 -52.49 -0.36 0.64 16 40 H 0.10 0.82 4.71 -51.93 -0.24 0.58 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -34.87 369.88 -10.60 -45.47 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.48 Total: 6.10 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.78 Total: -2.11 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.13 Total: -55.53 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.27 Total: -15.34 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.50 Total: -1.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.87 -10.60 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502085294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.107 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds