Wall clock time and date at job start Sat Apr 11 2020 07:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48505 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47132 * 299.99416 * 3 2 1 6 6 H 1.48500 * 109.47387 * 59.99571 * 3 2 1 7 7 C 1.38815 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99486 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99886 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.51235 * 60.10502 * 11 10 9 13 13 C 1.53714 * 109.48305 * 180.36241 * 11 10 9 14 14 N 1.47159 * 108.15881 * 172.39834 * 13 11 10 15 15 C 1.34780 * 120.97915 * 129.43390 * 14 13 11 16 16 O 1.21578 * 120.00000 * 3.53752 * 15 14 13 17 17 C 1.47625 * 119.99879 * 183.54047 * 15 14 13 18 18 C 1.40237 * 119.94938 * 130.88380 * 17 15 14 19 19 C 1.36015 * 120.19441 * 180.25777 * 18 17 15 20 20 C 1.40116 * 120.66175 * 359.52627 * 19 18 17 21 21 S 1.75964 * 130.37140 * 180.16683 * 20 19 18 22 22 C 1.75277 * 92.22855 * 180.28249 * 21 20 19 23 23 C 1.31739 * 111.46764 * 359.97438 * 22 21 20 24 24 C 1.39970 * 120.02495 * 0.47068 * 20 19 18 25 25 C 1.38647 * 119.94506 * 310.89916 * 17 15 14 26 26 C 1.47149 * 118.03863 * 309.16096 * 14 13 11 27 27 C 1.53296 * 108.38382 * 50.78459 * 26 14 13 28 28 O 1.42959 * 109.51300 * 300.00308 * 11 10 9 29 29 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00467 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46810 * 60.00488 * 10 9 7 32 32 H 1.08998 * 109.47307 * 300.00010 * 10 9 7 33 33 H 1.09000 * 109.83618 * 52.72728 * 13 11 10 34 34 H 1.08995 * 109.75101 * 292.02475 * 13 11 10 35 35 H 1.07995 * 119.90226 * 0.03793 * 18 17 15 36 36 H 1.07995 * 119.67463 * 179.73414 * 19 18 17 37 37 H 1.08000 * 124.27032 * 180.02562 * 22 21 20 38 38 H 1.08005 * 122.55500 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.96393 * 0.02562 * 25 17 15 40 40 H 1.08995 * 109.68512 * 170.50900 * 26 14 13 41 41 H 1.09000 * 109.68099 * 291.03031 * 26 14 13 42 42 H 1.08998 * 109.51310 * 67.62062 * 27 26 14 43 43 H 1.08999 * 109.51064 * 187.77405 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.4377 -4.7639 -0.8882 13 6 1.8322 -6.1510 0.0114 14 7 0.8602 -7.2402 0.1968 15 6 0.8487 -8.3074 -0.6263 16 8 1.6896 -8.4117 -1.4982 17 6 -0.1850 -9.3496 -0.4693 18 6 -0.9083 -9.7922 -1.5863 19 6 -1.8654 -10.7484 -1.4464 20 6 -2.1358 -11.3108 -0.1919 21 16 -3.2964 -12.5476 0.2766 22 6 -2.8086 -12.4653 1.9582 23 6 -1.8516 -11.5784 2.1397 24 6 -1.4250 -10.8827 0.9354 25 6 -0.4395 -9.8890 0.7823 26 6 -0.0949 -7.1328 1.3111 27 6 -0.7657 -5.7561 1.2418 28 8 0.2419 -4.7445 1.1695 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 2.6854 -3.7141 0.8912 32 1 2.6841 -3.7149 -0.8888 33 1 2.5513 -6.1575 0.8305 34 1 2.3537 -6.2819 -0.9367 35 1 -0.7071 -9.3701 -2.5597 36 1 -2.4203 -11.0800 -2.3115 37 1 -3.2379 -13.0665 2.7460 38 1 -1.4176 -11.3819 3.1090 39 1 0.1185 -9.5459 1.6411 40 1 -0.8500 -7.9139 1.2240 41 1 0.4335 -7.2369 2.2588 42 1 -1.3985 -5.7036 0.3559 43 1 -1.3731 -5.6019 2.1336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502085294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:32 Heat of formation + Delta-G solvation = -25.872116 kcal Electronic energy + Delta-G solvation = -27154.219267 eV Core-core repulsion = 23290.763180 eV Total energy + Delta-G solvation = -3863.456086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87669 -40.36338 -39.35880 -36.70920 -36.16944 -35.82639 -33.97535 -32.62594 -31.60816 -30.56630 -29.35075 -27.45035 -25.46755 -24.96333 -24.20377 -23.69011 -22.57985 -21.85970 -20.28042 -19.24128 -19.04143 -18.42967 -17.81490 -17.36056 -17.04816 -16.72678 -16.47385 -16.17647 -16.03912 -15.76566 -15.42614 -15.04318 -14.85070 -14.81254 -14.75934 -14.45475 -14.27493 -14.00404 -13.81706 -13.40652 -13.17626 -13.04939 -12.81935 -12.65987 -12.32266 -12.27486 -12.22913 -12.02495 -11.89167 -11.79150 -11.67240 -11.27012 -11.05525 -10.96526 -10.67615 -9.75875 -9.63093 -9.00566 -8.76002 -7.93835 -5.23313 -0.39860 -0.20959 0.47977 0.99343 1.21184 1.45337 1.48398 1.49576 1.59791 1.70838 2.52750 2.56651 2.73445 3.18183 3.40032 3.51941 3.57348 3.68111 3.85534 3.91443 4.00997 4.04053 4.11297 4.14036 4.29904 4.33709 4.41198 4.46876 4.56711 4.62775 4.65936 4.72727 4.81258 4.84115 4.93592 4.94981 5.07863 5.11333 5.14917 5.24177 5.34217 5.49209 5.59331 6.12863 6.20814 6.28089 6.86098 7.33866 8.07812 8.32546 9.30147 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.025000 B = 0.002045 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.721801 B =13688.917284 C =14050.328378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.740 5.740 10 C 0.160 3.840 11 C 0.087 3.913 12 H 0.048 0.952 13 C 0.096 3.904 14 N -0.605 5.605 15 C 0.563 3.437 16 O -0.572 6.572 17 C -0.136 4.136 18 C -0.070 4.070 19 C -0.084 4.084 20 C -0.141 4.141 21 S 0.096 5.904 22 C -0.186 4.186 23 C -0.122 4.122 24 C -0.091 4.091 25 C -0.041 4.041 26 C 0.068 3.932 27 C 0.039 3.961 28 O -0.385 6.385 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.198 0.802 38 H 0.174 0.826 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 -30.925 5.340 32.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.033 3.967 11 C 0.028 3.972 12 H 0.066 0.934 13 C -0.028 4.028 14 N -0.337 5.337 15 C 0.353 3.647 16 O -0.452 6.452 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.106 4.106 20 C -0.257 4.257 21 S 0.360 5.640 22 C -0.319 4.319 23 C -0.151 4.151 24 C -0.100 4.100 25 C -0.061 4.061 26 C -0.054 4.054 27 C -0.038 4.038 28 O -0.303 6.303 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.215 0.785 38 H 0.191 0.809 39 H 0.173 0.827 40 H 0.138 0.862 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.185 -31.668 4.345 32.996 hybrid contribution 0.980 1.868 0.250 2.124 sum -7.205 -29.800 4.595 31.001 Atomic orbital electron populations 1.69852 1.06719 1.25986 1.59527 1.25632 0.96466 1.01275 1.03693 0.85014 0.78237 0.79489 0.76644 1.18874 1.22019 1.21970 1.19708 0.91613 0.85185 1.41138 0.90317 1.42411 1.05723 1.00838 1.89325 1.20781 0.93035 0.83869 0.99027 1.22558 0.92311 0.94129 0.88168 0.93418 1.22248 0.91418 0.84554 1.04540 1.48158 1.34941 1.19848 1.30756 1.18632 0.84179 0.81671 0.80230 1.90784 1.40510 1.78156 1.35770 1.19534 0.99233 0.99754 0.95636 1.20797 0.94307 0.96061 0.98051 1.20320 0.98203 0.96268 0.95777 1.23270 1.02080 1.02536 0.97818 1.84290 1.38691 1.38300 1.02693 1.25460 1.02317 1.04300 0.99818 1.21188 0.98585 0.96823 0.98480 1.19506 0.98392 0.98964 0.93138 1.21289 0.95072 0.93655 0.96073 1.22978 0.93392 0.99311 0.89699 1.23205 0.90172 0.86679 1.03767 1.88109 1.47086 1.52773 1.42357 0.94025 0.79298 0.94916 0.93861 0.88852 0.88706 0.84694 0.83021 0.78461 0.80901 0.82749 0.86173 0.87974 0.93450 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.24 -14.07 9.99 84.04 0.84 -13.23 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.74 -39.40 5.49 -343.45 -1.89 -41.29 16 10 C 0.16 6.62 5.96 86.38 0.51 7.13 16 11 C 0.09 3.01 2.88 30.84 0.09 3.10 16 12 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 13 C 0.10 2.70 5.94 86.49 0.51 3.22 16 14 N -0.60 -14.95 3.01 -820.19 -2.47 -17.42 16 15 C 0.56 15.13 7.24 86.72 0.63 15.75 16 16 O -0.57 -19.75 16.51 -3.96 -0.07 -19.81 16 17 C -0.14 -2.87 5.04 -20.22 -0.10 -2.97 16 18 C -0.07 -1.39 9.65 22.24 0.21 -1.17 16 19 C -0.08 -1.35 9.99 22.21 0.22 -1.13 16 20 C -0.14 -2.24 6.49 23.15 0.15 -2.09 16 21 S 0.10 1.13 23.23 -56.49 -1.31 -0.18 16 22 C -0.19 -1.58 11.01 67.10 0.74 -0.85 16 23 C -0.12 -1.21 10.39 23.42 0.24 -0.97 16 24 C -0.09 -1.37 6.03 -20.37 -0.12 -1.49 16 25 C -0.04 -0.65 7.42 22.99 0.17 -0.48 16 26 C 0.07 1.25 5.41 86.35 0.47 1.72 16 27 C 0.04 0.93 6.98 72.08 0.50 1.43 16 28 O -0.38 -13.29 10.13 -148.98 -1.51 -14.80 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.38 21.52 7.54 -92.71 -0.70 20.82 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.09 2.85 7.11 -2.39 -0.02 2.83 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 38 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.15 1.81 6.91 -2.91 -0.02 1.79 16 40 H 0.12 1.72 4.71 -2.39 -0.01 1.71 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -76.36 369.88 0.95 -75.41 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.35 Total: 25.94 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.54 Total: 3.80 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -4.08 Total: -119.40 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.57 Total: -34.61 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.31 Total: -0.18 kcal Total: -76.36 0.95 -75.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502085294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.538 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds