Wall clock time and date at job start Sat Apr 11 2020 07:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48490 * 109.47080 * 270.00097 * 3 2 1 5 5 H 1.48506 * 109.46635 * 30.00300 * 3 2 1 6 6 H 1.48499 * 109.47138 * 149.99481 * 3 2 1 7 7 C 1.38801 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.52089 * 9.58343 * 14 13 11 16 16 C 1.53007 * 117.43939 * 224.23686 * 14 13 11 17 17 H 1.08997 * 119.53826 * 4.12272 * 16 14 13 18 18 C 1.57698 * 116.11096 * 161.63831 * 16 14 13 19 19 N 1.48153 * 104.67262 * 87.30768 * 18 16 14 20 20 C 1.34770 * 127.83577 * 139.77193 * 19 18 16 21 21 O 1.21280 * 119.99980 * 180.02562 * 20 19 18 22 22 C 1.50705 * 120.00300 * 0.02562 * 20 19 18 23 23 H 1.09000 * 115.54701 * 325.67018 * 22 20 19 24 24 C 1.52991 * 117.50171 * 179.97438 * 22 20 19 25 25 C 1.52995 * 60.00310 * 252.50890 * 24 22 20 26 26 F 1.39895 * 117.50057 * 252.51010 * 25 24 22 27 27 F 1.39898 * 117.49580 * 107.48524 * 25 24 22 28 28 C 1.48148 * 104.32357 * 319.77723 * 19 18 16 29 29 C 1.53003 * 117.44108 * 155.00191 * 14 13 11 30 30 H 1.09001 * 119.53792 * 355.88124 * 29 14 13 31 31 H 0.97001 * 119.99197 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 33 33 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 34 34 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 35 35 H 1.09000 * 110.91832 * 328.23604 * 18 16 14 36 36 H 1.08991 * 109.93898 * 205.89387 * 18 16 14 37 37 H 1.08999 * 117.49859 * 0.02562 * 24 22 20 38 38 H 1.09000 * 117.49943 * 144.99255 * 24 22 20 39 39 H 1.08997 * 110.40381 * 280.79806 * 28 19 18 40 40 H 1.08997 * 110.50307 * 158.41725 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3439 -2.2965 0.0014 13 7 6.0456 -4.4949 0.0011 14 6 7.4906 -4.7359 0.0016 15 1 8.1133 -3.8565 0.1654 16 6 8.0262 -5.8117 -0.9454 17 1 7.3429 -6.3126 -1.6312 18 6 9.5699 -5.7513 -1.2623 19 7 10.2063 -6.5368 -0.1792 20 6 11.2364 -7.3999 -0.2796 21 8 11.6473 -7.9712 0.7081 22 6 11.8778 -7.6551 -1.6193 23 1 11.2042 -7.6284 -2.4757 24 6 13.0432 -8.6451 -1.6674 25 6 13.3057 -7.1464 -1.8273 26 9 13.6469 -6.6828 -3.1024 27 9 13.9160 -6.4800 -0.7593 28 6 9.4532 -6.1583 1.0392 29 6 7.9834 -6.0658 0.5757 30 1 7.2681 -6.7560 1.0231 31 1 -0.4849 0.8401 0.0004 32 1 3.6439 -3.4314 -0.8893 33 1 3.6432 -3.4319 0.8906 34 1 5.4289 -5.2436 0.0011 35 1 9.9302 -4.7227 -1.2478 36 1 9.7686 -6.2092 -2.2311 37 1 13.3458 -9.1123 -0.7302 38 1 13.1362 -9.2703 -2.5555 39 1 9.7953 -5.1933 1.4129 40 1 9.5618 -6.9231 1.8081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526121790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:44 Heat of formation + Delta-G solvation = -90.044095 kcal Electronic energy + Delta-G solvation = -26504.881505 eV Core-core repulsion = 22084.413183 eV Total energy + Delta-G solvation = -4420.468322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.26210 -47.93147 -41.02916 -39.69323 -38.60364 -36.12577 -35.03424 -32.66852 -32.48209 -29.47040 -29.05242 -26.84085 -25.66467 -24.17174 -23.15243 -21.86166 -20.87255 -20.62349 -19.92068 -18.77725 -17.97543 -17.66097 -17.34591 -16.75635 -16.65096 -16.50899 -15.92542 -15.32843 -15.14408 -15.03422 -14.57132 -14.36769 -14.24842 -14.10328 -14.03875 -13.89792 -13.64103 -13.26994 -13.15533 -12.99268 -12.84095 -12.71732 -12.36600 -12.03942 -11.84847 -11.32164 -11.24131 -11.04948 -10.91680 -10.74753 -10.62507 -10.31720 -9.91312 -9.72006 -9.32823 -9.05898 -8.97030 -8.57484 -6.98476 -6.33643 -4.06340 1.54056 2.11764 2.42083 2.56848 2.62486 2.76188 3.10695 3.22417 3.29472 3.46351 3.51031 3.52808 3.60641 3.94032 4.06288 4.11806 4.23426 4.27544 4.28614 4.49550 4.61380 4.70205 4.75895 4.87407 4.94052 5.04327 5.05449 5.10037 5.15172 5.31509 5.40068 5.51740 5.59287 5.65490 5.66874 5.91255 6.32051 6.89696 7.38067 7.48951 7.89226 8.28746 8.36610 9.12266 10.75467 Molecular weight = 346.09amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.001715 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.367807 B =16322.207647 C =16747.242633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.708 5.708 14 C 0.132 3.868 15 H 0.141 0.859 16 C -0.186 4.186 17 H 0.131 0.869 18 C 0.127 3.873 19 N -0.615 5.615 20 C 0.568 3.432 21 O -0.524 6.524 22 C -0.194 4.194 23 H 0.151 0.849 24 C -0.139 4.139 25 C 0.225 3.775 26 F -0.152 7.152 27 F -0.149 7.149 28 C 0.136 3.864 29 C -0.188 4.188 30 H 0.126 0.874 31 H 0.271 0.729 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.403 0.597 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.561 -19.927 -4.528 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.324 3.676 12 O -0.386 6.386 13 N -0.360 5.360 14 C 0.024 3.976 15 H 0.158 0.842 16 C -0.207 4.207 17 H 0.149 0.851 18 C 0.004 3.996 19 N -0.349 5.349 20 C 0.356 3.644 21 O -0.400 6.400 22 C -0.216 4.216 23 H 0.168 0.832 24 C -0.177 4.177 25 C 0.187 3.813 26 F -0.133 7.133 27 F -0.130 7.130 28 C 0.014 3.986 29 C -0.208 4.208 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.238 0.762 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.101 0.899 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 25.001 -18.572 -3.988 31.399 hybrid contribution -1.283 -0.583 -0.251 1.431 sum 23.718 -19.156 -4.238 30.781 Atomic orbital electron populations 1.69938 1.05914 1.27823 1.47849 1.24718 0.94466 0.98992 0.93132 0.86735 0.81884 0.83272 0.79957 1.19175 1.19892 1.15920 1.22302 0.88162 0.97570 1.59036 0.89338 1.84817 1.09436 0.99585 1.97445 1.23282 0.93395 1.04797 1.06039 1.20349 0.90762 0.81868 0.74629 1.90710 1.58715 1.42028 1.47117 1.45339 1.05310 1.08544 1.76782 1.21606 0.83564 0.93459 0.98943 0.84192 1.24924 0.96389 1.06018 0.93327 0.85087 1.22500 0.89716 0.96632 0.90771 1.49027 1.32518 1.42390 1.10947 1.18680 0.78949 0.78126 0.88691 1.90756 1.62258 1.48990 1.38024 1.23700 0.92831 1.05042 0.99996 0.83159 1.24330 0.95462 0.90255 1.07668 1.19632 0.94294 0.94230 0.73118 1.93079 1.92951 1.90358 1.36882 1.93097 1.84049 1.82243 1.53582 1.21778 0.87545 1.01774 0.87480 1.24122 0.97884 1.01994 0.96822 0.85642 0.91888 0.88281 0.88215 0.76224 0.89421 0.89489 0.84494 0.84726 0.89908 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.97 55.49 0.78 -25.25 16 2 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.31 27.74 -169.99 -4.72 16.59 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.44 16 7 C -0.52 -14.65 10.04 30.94 0.31 -14.34 16 8 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 10 C -0.12 -2.22 6.16 36.01 0.22 -2.00 16 11 C 0.54 8.58 7.85 -10.98 -0.09 8.50 16 12 O -0.51 -10.14 15.43 5.56 0.09 -10.06 16 13 N -0.71 -7.63 5.56 -53.80 -0.30 -7.93 16 14 C 0.13 1.22 5.92 -67.93 -0.40 0.82 16 15 H 0.14 1.52 7.40 -51.93 -0.38 1.14 16 16 C -0.19 -1.25 7.34 -87.38 -0.64 -1.89 16 17 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 18 C 0.13 0.78 6.78 -0.56 0.00 0.78 16 19 N -0.62 -4.92 3.32 -167.17 -0.55 -5.47 16 20 C 0.57 5.22 7.33 -10.99 -0.08 5.14 16 21 O -0.52 -6.58 16.53 5.56 0.09 -6.49 16 22 C -0.19 -1.17 5.57 -91.77 -0.51 -1.68 16 23 H 0.15 0.51 7.06 -51.93 -0.37 0.14 16 24 C -0.14 -0.67 10.01 -26.74 -0.27 -0.94 16 25 C 0.22 1.63 5.20 -26.73 -0.14 1.49 16 26 F -0.15 -1.17 17.60 2.25 0.04 -1.13 16 27 F -0.15 -1.50 17.13 2.25 0.04 -1.47 16 28 C 0.14 1.07 6.85 -2.41 -0.02 1.05 16 29 C -0.19 -1.33 6.98 -89.22 -0.62 -1.96 16 30 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.10 1.63 8.14 -51.92 -0.42 1.20 16 33 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 34 H 0.40 3.20 8.83 -40.82 -0.36 2.84 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.36 6.77 -51.93 -0.35 0.01 16 37 H 0.14 0.76 7.67 -51.93 -0.40 0.36 16 38 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.78 7.88 -51.93 -0.41 0.37 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -35.60 367.24 -8.14 -43.74 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.81 Total: -0.32 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.33 Total: -2.38 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: -0.08 Total: -38.65 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.18 Total: -16.54 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.72 Total: 16.59 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.60 -8.14 -43.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526121790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.304 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds