Wall clock time and date at job start Sat Apr 11 2020 07:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48490 * 109.47080 * 270.00097 * 3 2 1 5 5 H 1.48506 * 109.46635 * 30.00300 * 3 2 1 6 6 H 1.48499 * 109.47138 * 149.99481 * 3 2 1 7 7 C 1.38801 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.52089 * 9.58343 * 14 13 11 16 16 C 1.53007 * 117.43939 * 224.23686 * 14 13 11 17 17 H 1.08997 * 119.53826 * 4.12272 * 16 14 13 18 18 C 1.57698 * 116.11096 * 161.63831 * 16 14 13 19 19 N 1.48153 * 104.67262 * 87.30768 * 18 16 14 20 20 C 1.34770 * 127.83577 * 139.77193 * 19 18 16 21 21 O 1.21280 * 119.99980 * 180.02562 * 20 19 18 22 22 C 1.50705 * 120.00300 * 0.02562 * 20 19 18 23 23 H 1.09000 * 115.54701 * 325.67018 * 22 20 19 24 24 C 1.52991 * 117.50171 * 179.97438 * 22 20 19 25 25 C 1.52995 * 60.00310 * 252.50890 * 24 22 20 26 26 F 1.39895 * 117.50057 * 252.51010 * 25 24 22 27 27 F 1.39898 * 117.49580 * 107.48524 * 25 24 22 28 28 C 1.48148 * 104.32357 * 319.77723 * 19 18 16 29 29 C 1.53003 * 117.44108 * 155.00191 * 14 13 11 30 30 H 1.09001 * 119.53792 * 355.88124 * 29 14 13 31 31 H 0.97001 * 119.99197 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 33 33 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 34 34 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 35 35 H 1.09000 * 110.91832 * 328.23604 * 18 16 14 36 36 H 1.08991 * 109.93898 * 205.89387 * 18 16 14 37 37 H 1.08999 * 117.49859 * 0.02562 * 24 22 20 38 38 H 1.09000 * 117.49943 * 144.99255 * 24 22 20 39 39 H 1.08997 * 110.40381 * 280.79806 * 28 19 18 40 40 H 1.08997 * 110.50307 * 158.41725 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3439 -2.2965 0.0014 13 7 6.0456 -4.4949 0.0011 14 6 7.4906 -4.7359 0.0016 15 1 8.1133 -3.8565 0.1654 16 6 8.0262 -5.8117 -0.9454 17 1 7.3429 -6.3126 -1.6312 18 6 9.5699 -5.7513 -1.2623 19 7 10.2063 -6.5368 -0.1792 20 6 11.2364 -7.3999 -0.2796 21 8 11.6473 -7.9712 0.7081 22 6 11.8778 -7.6551 -1.6193 23 1 11.2042 -7.6284 -2.4757 24 6 13.0432 -8.6451 -1.6674 25 6 13.3057 -7.1464 -1.8273 26 9 13.6469 -6.6828 -3.1024 27 9 13.9160 -6.4800 -0.7593 28 6 9.4532 -6.1583 1.0392 29 6 7.9834 -6.0658 0.5757 30 1 7.2681 -6.7560 1.0231 31 1 -0.4849 0.8401 0.0004 32 1 3.6439 -3.4314 -0.8893 33 1 3.6432 -3.4319 0.8906 34 1 5.4289 -5.2436 0.0011 35 1 9.9302 -4.7227 -1.2478 36 1 9.7686 -6.2092 -2.2311 37 1 13.3458 -9.1123 -0.7302 38 1 13.1362 -9.2703 -2.5555 39 1 9.7953 -5.1933 1.4129 40 1 9.5618 -6.9231 1.8081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526121790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:43 Heat of formation + Delta-G solvation = -114.735468 kcal Electronic energy + Delta-G solvation = -26505.952203 eV Core-core repulsion = 22084.413183 eV Total energy + Delta-G solvation = -4421.539020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.83868 -48.52757 -41.72111 -40.66658 -39.51685 -36.65972 -35.92376 -34.66381 -33.61591 -30.74894 -29.67155 -27.88066 -27.47994 -24.74795 -23.63488 -22.64210 -21.90744 -21.31503 -20.52474 -19.87165 -19.33276 -18.25320 -18.08614 -17.92698 -17.57473 -17.12273 -17.07629 -16.61584 -16.42121 -15.97182 -15.92662 -15.17773 -15.10266 -14.87351 -14.80042 -14.71730 -14.66408 -14.55190 -14.04691 -13.91070 -13.71902 -13.54064 -13.33626 -13.15649 -13.00994 -12.67645 -12.65379 -12.33966 -12.03298 -11.86964 -11.53975 -11.23596 -11.16306 -11.13334 -10.91785 -10.52659 -9.98987 -9.86813 -8.98488 -8.50837 -6.21427 0.91828 0.98566 1.32255 1.43908 1.45620 1.51249 1.59874 1.95481 2.06752 2.24051 2.25916 2.52265 2.70652 2.87640 3.06110 3.10753 3.42547 3.47808 3.55035 3.59904 3.70314 3.81378 3.90267 4.14077 4.24704 4.28980 4.41893 4.48297 4.56178 4.60841 4.69121 4.70196 4.76605 4.91423 4.94984 5.05857 5.41574 5.71421 6.12551 6.27386 6.40053 6.82302 6.94560 7.14173 8.61334 Molecular weight = 346.09amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.001715 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.367807 B =16322.207647 C =16747.242633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.175 6.175 10 C -0.111 4.111 11 C 0.543 3.457 12 O -0.557 6.557 13 N -0.683 5.683 14 C 0.106 3.894 15 H 0.120 0.880 16 C -0.162 4.162 17 H 0.153 0.847 18 C 0.123 3.877 19 N -0.615 5.615 20 C 0.560 3.440 21 O -0.567 6.567 22 C -0.186 4.186 23 H 0.185 0.815 24 C -0.119 4.119 25 C 0.201 3.799 26 F -0.156 7.156 27 F -0.174 7.174 28 C 0.130 3.870 29 C -0.170 4.170 30 H 0.141 0.859 31 H 0.276 0.724 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.420 0.580 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.171 0.829 39 H 0.079 0.921 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.478 -21.679 -5.927 33.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.051 5.949 10 C -0.262 4.262 11 C 0.329 3.671 12 O -0.434 6.434 13 N -0.334 5.334 14 C -0.002 4.002 15 H 0.138 0.862 16 C -0.182 4.182 17 H 0.170 0.830 18 C 0.000 4.000 19 N -0.347 5.347 20 C 0.349 3.651 21 O -0.446 6.446 22 C -0.207 4.207 23 H 0.202 0.798 24 C -0.157 4.157 25 C 0.164 3.836 26 F -0.136 7.136 27 F -0.154 7.154 28 C 0.008 3.992 29 C -0.191 4.191 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.258 0.742 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.188 0.812 39 H 0.097 0.903 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 25.907 -20.372 -5.400 33.397 hybrid contribution -1.511 -0.200 0.208 1.538 sum 24.396 -20.571 -5.192 32.331 Atomic orbital electron populations 1.70018 1.07299 1.28980 1.49155 1.25566 0.95269 1.02264 0.92965 0.85874 0.80686 0.79651 0.80209 1.18664 1.18562 1.16012 1.22466 0.90286 0.96683 1.58167 0.91814 1.84743 1.06384 1.06166 1.97599 1.23264 0.95517 0.99668 1.07768 1.19925 0.89425 0.83036 0.74699 1.90703 1.59237 1.43737 1.49774 1.44974 1.06575 1.07170 1.74689 1.21625 0.82065 0.93977 1.02484 0.86229 1.25005 0.96792 1.03127 0.93291 0.82979 1.22678 0.89082 0.96688 0.91514 1.49115 1.32220 1.41938 1.11427 1.19243 0.78805 0.77603 0.89433 1.90734 1.63477 1.50669 1.39699 1.23802 0.92756 1.05003 0.99174 0.79822 1.24494 0.93452 0.88964 1.08749 1.19987 0.95317 0.95826 0.72448 1.93066 1.93064 1.90587 1.36880 1.93041 1.84616 1.82945 1.54818 1.21800 0.88273 1.01393 0.87766 1.24041 0.97341 1.00159 0.97534 0.84104 0.91416 0.86443 0.86624 0.74169 0.89674 0.86490 0.85449 0.81157 0.90334 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.90 13.97 21.65 0.30 -54.59 16 2 C 0.04 2.58 5.50 84.86 0.47 3.04 16 3 Si 0.91 44.12 27.74 68.60 1.90 46.03 16 4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.24 -11.36 6.74 99.48 0.67 -10.69 16 7 C -0.53 -29.88 10.04 67.95 0.68 -29.20 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 9 S -0.18 -8.49 18.55 -56.49 -1.05 -9.54 16 10 C -0.11 -3.82 6.16 71.24 0.44 -3.38 16 11 C 0.54 16.56 7.85 87.66 0.69 17.25 16 12 O -0.56 -21.85 15.43 -3.02 -0.05 -21.89 16 13 N -0.68 -13.04 5.56 -442.53 -2.46 -15.50 16 14 C 0.11 1.73 5.92 45.00 0.27 2.00 16 15 H 0.12 2.55 7.40 -2.39 -0.02 2.53 16 16 C -0.16 -1.62 7.34 -8.69 -0.06 -1.69 16 17 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 18 C 0.12 1.15 6.78 87.73 0.59 1.74 16 19 N -0.61 -8.70 3.32 -801.21 -2.66 -11.36 16 20 C 0.56 9.50 7.33 87.66 0.64 10.15 16 21 O -0.57 -14.09 16.53 -3.03 -0.05 -14.14 16 22 C -0.19 -1.76 5.57 -11.54 -0.06 -1.83 16 23 H 0.18 0.41 7.06 -2.39 -0.02 0.39 16 24 C -0.12 -0.86 10.01 30.59 0.31 -0.56 16 25 C 0.20 2.64 5.20 30.59 0.16 2.80 16 26 F -0.16 -2.11 17.60 44.97 0.79 -1.32 16 27 F -0.17 -3.53 17.13 44.97 0.77 -2.76 16 28 C 0.13 1.90 6.85 86.53 0.59 2.49 16 29 C -0.17 -2.00 6.98 -9.89 -0.07 -2.07 16 30 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.28 15.34 8.31 -92.71 -0.77 14.56 16 32 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.12 3.62 8.14 -2.40 -0.02 3.60 16 34 H 0.42 5.21 8.83 -92.71 -0.82 4.39 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.12 0.44 6.77 -2.39 -0.02 0.42 16 37 H 0.13 1.24 7.67 -2.39 -0.02 1.23 16 38 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.40 7.88 -2.39 -0.02 1.38 16 Total: -1.00 -80.05 367.24 2.39 -77.66 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.25 Total: 6.66 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 4.64 Total: 0.76 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -4.82 Total: -81.45 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.10 Total: -36.03 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 1.56 Total: -4.08 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.03 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.05 Total: -9.54 kcal Total: -80.05 2.39 -77.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526121790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.080 kcal (2) G-P(sol) polarization free energy of solvation -80.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds